Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_03148 LG1 44249650 44252598 PREDICTED: transcription factor ICE1-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   seed dormancy process, seed morphogenesis, abscisic acid-activated signaling pathway, regulation of abscisic acid biosynthetic process, response to cold, regulation of abscisic acid biosynthetic process, response to cold, abscisic acid-activated signaling pathway, seed morphogenesis, regulation of abscisic acid biosynthetic process, seed dormancy process, seed morphogenesis, positive regulation of transcription, DNA-templated, endosperm development, abscisic acid-activated signaling pathway, seed dormancy process, negative regulation of transcription, DNA-templated, seed morphogenesis, seed dormancy process, regulation of transcription, DNA-templated, seed morphogenesis, seed dormancy process, negative regulation of transcription, DNA-templated, abscisic acid-activated signaling pathway, seed dormancy process, seed morphogenesis, seed morphogenesis, seed dormancy process, regulation of transcription, DNA-templated, seed morphogenesis, stomatal lineage progression, response to freezing, seed morphogenesis, seed morphogenesis, endosperm development, seed dormancy process, stomatal lineage progression, seed morphogenesis, regulation of transcription, DNA-templated, seed dormancy process, endosperm development, stomatal lineage progression, seed dormancy process, regulation of abscisic acid biosynthetic process, regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, endosperm development, seed morphogenesis, protein ubiquitination, seed dormancy process, negative regulation of transcription, DNA-templated, seed dormancy process, regulation of abscisic acid biosynthetic process, positive regulation of transcription, DNA-templated, negative regulation of transcription, DNA-templated, response to freezing
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, protein binding, protein binding, core promoter sequence-specific DNA binding, DNA binding, sequence-specific DNA binding, core promoter sequence-specific DNA binding, protein binding, protein binding, protein binding, DNA-binding transcription factor activity, protein dimerization activity, cis-regulatory region sequence-specific DNA binding, protein binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, cis-regulatory region sequence-specific DNA binding, DNA-binding transcription factor activity, protein binding, protein binding, DNA binding
SNP Position Effect Amino acid change
C/T 44250752 downstream_gene_variant
T/G 44250761 downstream_gene_variant
T/C 44251365 downstream_gene_variant
A/T 44251899 downstream_gene_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_03148.1
MMSGWMQETEEQNSASWSNPNANELSCFYKPISDIHEEWHVPNSTTQIHSHVTDTAFSTNFAHNMLLHQHQPLHTFSSSTSLDLSQGHNFFTPKPFFYPLDHAFRAGSDVGFLDPHALNKVHHGGVFSSSSDNNQFALPNLATLCAMPPQQDGVGFPGFKNIVDSDHVEGSRKALLLSTSNVLKPLESFPPSGVQPTLFQKRAALRKSMEDNCKGKSKGNGDSSKRKTCNNGEDEGSGLNLDSDESGEMEESGRNGGNSSNANSTVTGGVDQKGKKKTGIPAKNLMAERRRRKKLNDRLYMLRSVVPNISKMDRASILGDAVEYLKELLQRIGDLHNELESTTPAGSSLTSSFLHPLTPKLPTSMQEELSLSSLPSPNGQPVRVDVGLSEGGVKIQMCCERKPGLLLCTMRALDNLGIDIHQAVITYFNGFAMDILRAQICSERQDVHPEQIKAVLLDSAGYHGMI*


CDS Sequence:
>Vu_03148.1
ATGATGTCTGGTTGGATGCAAGAGACAGAAGAACAAAACTCTGCTTCATGGTCAAACCCAAACGCCAACGAGCTAAGCTGCTTCTACAAACCCATCTCCGACATCCATGAAGAATGGCACGTGCCCAACAGCACCACCCAGATTCACTCACATGTTACAGACACGGCTTTCTCCACCAACTTCGCTCATAACATGTTACTCCATCAACACCAACCATTACACACTTTCTCTTCTTCCACCAGCCTTGACCTATCTCAAGGGCACAACTTCTTCACCCCCAAACCCTTCTTTTACCCGTTGGACCACGCCTTTCGCGCGGGTTCCGATGTGGGGTTTCTTGATCCTCATGCTTTGAACAAGGTTCATCATGGTGGTGTCTTCTCCAGCTCAAGTGATAATAACCAGTTCGCCCTTCCAAATTTAGCAACCCTGTGTGCAATGCCTCCCCAACAAGACGGTGTTGGATTTCCCGGATTCAAGAATATCGTTGACTCTGATCATGTGGAGGGTTCAAGAAAGGCCTTGCTTCTGAGCACGTCCAACGTACTGAAACCCCTTGAATCGTTCCCTCCATCAGGTGTGCAACCAACACTTTTTCAGAAGCGAGCAGCACTGAGGAAAAGCATGGAAGATAACTGCAAAGGCAAGAGTAAAGGGAATGGCGATAGTAGCAAGAGGAAGACTTGTAATAATGGAGAGGATGAAGGGTCCGGGTTGAATCTTGATTCTGATGAGAGTGGTGAGATGGAAGAGAGTGGAAGGAACGGCGGAAACAGCTCGAATGCGAATAGCACCGTCACTGGCGGCGTGGATCAAAAGGGCAAGAAGAAGACAGGGATACCTGCGAAGAATTTGATGGCCGAACGCCGGCGAAGAAAGAAGCTCAATGACAGACTCTACATGCTGAGATCAGTTGTTCCCAATATCAGCAAAATGGACAGAGCTTCAATACTGGGGGATGCAGTAGAGTATTTGAAGGAACTTCTGCAAAGGATTGGTGACCTTCACAATGAATTGGAGTCAACAACACCAGCTGGTTCTTCATTGACTTCAAGCTTTCTTCATCCCTTGACGCCCAAATTACCAACAAGTATGCAAGAAGAACTTTCTCTCAGCTCATTGCCAAGCCCTAATGGCCAACCTGTGAGGGTTGATGTTGGGTTGAGTGAAGGAGGTGTAAAGATTCAGATGTGTTGTGAGAGGAAACCTGGTCTCTTGCTGTGTACCATGAGGGCTCTCGACAACCTTGGCATAGACATCCACCAAGCTGTCATCACCTATTTCAATGGATTTGCCATGGATATTCTCCGAGCTCAGATATGTAGCGAACGTCAAGATGTCCATCCAGAGCAAATAAAAGCAGTTCTATTAGATTCGGCTGGCTACCATGGCATGATCTAG


Promoter Sequence:
>Vu_03148::LG1:44247650-44249650(+)
AAGATAAACCAAATATCTATAAATTGTTTTAAGATTTTAAGTTGAATATAATATTATATTTTTTTATACGAGCATGTTGACGTTTACGTTTTATTTGTTTCGTATATCTCCCTTCAAAAAAGTTTAGATTTGTATACCTTACTAGGAAAATAAAAATAATTGGTAATTCATATTTTTAAACATGTATTGTCTATTTCAATACCTTTGGAGTATACATTATATAAGTTGAATGAGTAAATTAATTGATGATGCAGAGTTTGAAAAAGTATTTATAAATGACAAATTTGATTAGCTGTTAGAATTTGAAGAAACAAAATTGATGGTTTAGTCTGAACTAAAATATGAAGAATTAATTTAAGAGTGTAGAAAATAAAATAAAAAAATTGGTTATAAATATTGTAATAAGAAAGAAGGTCCCACAATTAGGGGTGGCATACCCCAGAAGAGAAAGGGAAAGGGAAATTAAGAGGCATGTCCCATACTCACGAGGTTAGTAGAGAAACAATAAAGTAAGGAGTATCTTCCTTTTCCATACCTTCACTCACTCAAACTTATTTAAGATTCTTGTCCCTCTTTGCTTTCTATACCTTTTCAAATATCTTTTCATTTCATTTTTCTATTCATTGCATTCAATTCTCTCCCTCAATCACACATGCATGTTGCCTCCTAATACTTTCCCTTACATCCATTCTTCAACTACACTACTTTCACTTTCCAACCATACTCAAATTATATCAAATACTTCACCACAATTCTAATAAACTTTACATTCATTCTATCAAAAAACAAAATAATAGTTCTTTACATTAAATTCAGAATTCATTCCTTTCATTGCACCTACAAATATATTTAAGTTATTTTATTTTGAGAAAAATCTAGGATATAAAAACAAAAACCATTTGAGTTTCTTATAATATTAAAAATGAAAAAAATATATTTTCACTTAGATTTTTTTGTAACTTTCTTACACAAGTGTTATTATTTTCCTTATTTATTATTTATTTGTTATTTTGCTAACATATTTAATAAAAAAATGACATGTATATTATATTAAAATGTTATTAAATAAATTTATATTAACATATATTTTTTCACTGATTTATTATTTATTTGTTATTGTGCTGATATATTCTATATTTAATAAAAAAAATATGACATGTATAATATTAAATCAAAATATTATTAAAAAAATCTGTATTAACATATTATTTTTCGTTAAAAATTATGTTATGTATTCTATATCACTCTTAATAATAAAGAAACTTCAAAAATATACATTTTTATTCTTTTAACTTAATCGGATAGAAACTCACTTTAAGAAACAACCTTTTACGATGAAGTAACAATTTTTTTTGTAGAACATGAACCTTTTTAAGAAGAAGAAACTAAAACGGTTACTTTAATGTGTTAAGAAAAGCAATAATTCTTAAACAACTACATAAAGGAATTGGCAGTAAATTAACCTTAAAGACTATACACAGAAGTAGTTGATTTATTCGTGTTGAATAAATTTTGAATGAAGAAAAATAATTGAATGACATTGAAGTGGTTATACCTTATAGTAGATAAGGATATAATAGATAAAGGATAGGGTTGAATTAAAGACTTCACAAGACACATATGAATGTTCATATACATTACTTTCACCCATATATTCCATTTCCCTCTCTTTTCTACAATATTCCCTGTACTCACAATAATATATATAAAACAAACAAACAACAGTTTTTAAATTATATTAACAAATTTTCAATTTGAAAAGTTACGTACACTGGAATGTTTCTTCAATTTTAGTCTTCTTCCTCGGATTGCTTTCTGTTAAATACTAAACAAAGATGATGTTTTTTATATATTGTGTTTATTTAAGAAGAGAGACGATACACGTACACCGATATTGATGCCCTTTTCCTTCTGCAAAGTTCTCTTCTTCAATTCTTCTACGCCCATCCAAGCAAAACACAAGCCATCATTTGTCAAAAACAAAAGAAAACAACATCAAA


Gene Sequence:
>Vu_03148(+)
ATGATGTCTGGTTGGATGCAAGAGACAGAAGAACAAAACTCTGCTTCATGGTCAAACCCAAACGCCAACGAGCTAAGCTGCTTCTACAAACCCATCTCCGACATCCATGAAGAATGGCACGTGCCCAACAGCACCACCCAGATTCACTCACATGTTACAGACACGGCTTTCTCCACCAACTTCGCTCATAACATGTTACTCCATCAACACCAACCATTACACACTTTCTCTTCTTCCACCAGCCTTGACCTATCTCAAGGGCACAACTTCTTCACCCCCAAACCCTTCTTTTACCCGTTGGACCACGCCTTTCGCGCGGGTTCCGATGTGGGGTTTCTTGATCCTCATGCTTTGAACAAGGTTCATCATGGTGGTGTCTTCTCCAGCTCAAGTGATAATAACCAGTTCGCCCTTCCAAATTTAGCAACCCTGTGTGCAATGCCTCCCCAACAAGACGGTGTTGGATTTCCCGGATTCAAGAATATCGTTGACTCTGATCATGTGGAGGGTTCAAGAAAGGCCTTGCTTCTGAGCACGTCCAACGTACTGAAACCCCTTGAATCGTTCCCTCCATCAGGTGTGCAACCAACACTTTTTCAGAAGCGAGCAGCACTGAGGAAAAGCATGGAAGATAACTGCAAAGGCAAGAGTAAAGGGAATGGCGATAGTAGCAAGAGGAAGACTTGTAATAATGGAGAGGATGAAGGGTCCGGGTTGAATCTTGATTCTGATGAGAGTGGTGAGATGGAAGAGAGTGGAAGGAACGGCGGAAACAGCTCGAATGCGAATAGCACCGTCACTGGCGGCGTGGATCAAAAGGGCAAGAAGAAGACAGGGATACCTGCGAAGAATTTGATGGCCGAACGCCGGCGAAGAAAGAAGCTCAATGACAGACTCTACATGCTGAGATCAGTTGTTCCCAATATCAGCAAAGTAAGACTTAATTTTCTTTAGCACCAAACTTGCTGCATTTATCCAATTACGTTCGGTTTTGTTTTTCATGTCAGACTTTTACTTCAATACAATCTTGTCTAATTAAAGATAGACACCATATGCAGAAACTTCAATTCCAAACATTGTAGCACAGCACTAGTTAAAAACACACAGAAAATAAGAAAAAAACATGTAAGTTTCATGATGATATGGAATGATTAAGCACGACTTCATTGATACTTTTTTCTTAGGAACTAGGGTTACTCAATCATGTTATAGGCTATACATGATTCATAATATCCACTAATAAATCAACAAATACATAACAAGTGATTGTGCAAGGTAGTGTTTATAGAAGAAGCTAATCAACATTTATCATGGTTCCATAGCTCTCTATGGTGGATATGATATGCATGGATTTGTTGAACTATTTGATAAGTTTGGTTTAAAACTAAGATGGACAGAGCTTCAATACTGGGGGATGCAGTAGAGTATTTGAAGGAACTTCTGCAAAGGATTGGTGACCTTCACAATGAATTGGAGTCAACAACACCAGCTGGTTCTTCATTGACTTCAAGCTTTCTTCATCCCTTGACGCCCAAATTACCAACAAGTATGCAAGAAGAACTTTCTCTCAGCTCATTGCCAAGCCCTAATGGCCAACCTGTGAGGGTAATGTATTGCTTGCCCTATTCTGGAACTTCTTCTTTTTTCCCATATATATGCTTCAACTCACATGCCTTTCTTAATTTCTGTTCCTATATTTGGGTATGAATATCATATATGTCACGACAAGAAAAAAAAAAAGAGAAGGTTAGCTCTTTCTTGTTCTTGGAAGTGCATGATTGCATGAAAAGGAGTATCTTTCTCATTTCCTTTTATATTCTTTAATCTAAAAACTAAACTAGAGAAAACGATAGAGTATATGTTTGTTTTAAGAGTTTAAATTCATCCCAATACTTACGAAGTTGGAAATTTCCCAAACTTTATATATATATATGAGTTTTAAAATGGAAATTCAAGGTAGAGTTCATTTTCAGAAAAGTAAGAACCTTGTTTATTGTTCTTTGTTGATTATTCGTGTCTTCAAAATATGTCTATTTTGATAGATTGATTTTTTTTAATATGTTTTAAAATATTAGTATTAATATATTTTGAAGTATTATACATTAAAAAAGGTCTGCAAAGATTCATCTTTACTAATGTATCAGTTTTTAATTAGGAACGGAGAAAGTTGAATTTAGTAATGTTACTCTTAAGCCAAATTCATAAAAGAGAAGTTTTTTTAAGAATTTCTTTTCAGTTGTTAATGAGTAAAACCATTTAACATATTAAAAGTCAAAGTTTATTCCTTATAAATAGATAGGGAAAATAATTAGCATTTGACTTGATTGAGTTGATGAAAAGTAATAGAAAAGTTTTGGCGGGAAATATAGGTTGATGTTGGGTTGAGTGAAGGAGGTGTAAAGATTCAGATGTGTTGTGAGAGGAAACCTGGTCTCTTGCTGTGTACCATGAGGGCTCTCGACAACCTTGGCATAGACATCCACCAAGCTGTCATCACCTATTTCAATGGATTTGCCATGGATATTCTCCGAGCTCAGGTCAACCTTTTTCTATTCTTTAATCCTCATTATAAAATCAAACCATGTGCATCATTTCAAATGCACTCACTATTCATATCAAACTTTTTTTATACTGTTATCATAAATCATGCTTTATAGAATATTCTTATAAAATTCAACAAACAAGATGCACTAATTCTTCATATTTTATTTTATGTCTTCCCAGGAACATTCCTTGCTTTATAATTAAGGTTGAAAGTTGTATTGAGATGATATCTAGGAATAAAAAACCATGGCTATTATGAATTGATGAGTTTTTTTTTATTATTTTTATTCTGAGGTCTAATTTTTTTCTTCTCTCAATCAGATATGTAGCGAACGTCAAGATGTCCATCCAGAGCAAATAAAAGCAGTTCTATTAGATTCGGCTGGCTACCATGGCATGATCTAG