Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_03178 LG1 44575051 44580874 PREDICTED: calcium-dependent protein kinase SK5
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   peptidyl-serine phosphorylation, positive regulation of abscisic acid-activated signaling pathway, regulation of pollen tube growth, regulation of pollen tube growth, protein autophosphorylation, regulation of pollen tube growth, regulation of pollen tube growth, peptidyl-serine phosphorylation, positive regulation of abscisic acid-activated signaling pathway, protein phosphorylation, protein phosphorylation, intracellular signal transduction, protein phosphorylation, regulation of inward rectifier potassium channel activity, positive regulation of abscisic acid-activated signaling pathway, regulation of inward rectifier potassium channel activity, positive regulation of abscisic acid-activated signaling pathway, protein autophosphorylation, protein phosphorylation, positive regulation of abscisic acid-activated signaling pathway, regulation of pollen tube growth, protein autophosphorylation, protein autophosphorylation, protein autophosphorylation, regulation of inward rectifier potassium channel activity, protein phosphorylation, protein autophosphorylation, regulation of pollen tube growth, protein phosphorylation, regulation of pollen tube growth, peptidyl-serine phosphorylation, regulation of pollen tube growth
Cellular Component   is active in   nucleus, cytoplasm
Cellular Component   located in   nucleus, plasma membrane, cytosol
Molecular Function   enables   protein binding, calmodulin-dependent protein kinase activity, protein binding, protein binding, protein binding, protein binding, protein binding, protein serine/threonine kinase activity, calmodulin binding, calcium-dependent protein serine/threonine kinase activity, protein binding, calmodulin-dependent protein kinase activity, protein serine/threonine kinase activity, protein binding, protein binding, calmodulin-dependent protein kinase activity, protein kinase activity, protein kinase activity, protein binding, calcium-dependent protein serine/threonine kinase activity, protein binding, calcium ion binding, protein binding, protein serine/threonine kinase activity, calcium-dependent protein serine/threonine kinase activity, calmodulin-dependent protein kinase activity, protein binding, calmodulin-dependent protein kinase activity, protein kinase activity, calmodulin-dependent protein kinase activity
Pathway   B 09159 Environmental adaptation   C 04626 Plant-pathogen interaction [PATH:ko04626]
SNP Position Effect Amino acid change
T/A 44575174 missense_variant p.Glu501Val
A/T 44575284 synonymous_variant p.Thr464Thr
A/G 44575377 intron_variant
G/T 44575396 intron_variant
T/A 44575445 splice_region_variant&intron_variant
A/G 44575885 intron_variant
A/T 44576031 splice_region_variant&intron_variant
T/A 44576178 missense_variant p.Glu332Asp
T/A 44576431 intron_variant
C/A 44576567 intron_variant
A/T 44577598 intron_variant
C/T 44577636 intron_variant
G/A 44577787 missense_variant p.Pro287Leu
G/A 44577967 missense_variant p.Ala262Val
A/T 44578431 intron_variant
A/G 44578716 intron_variant
C/T 44579010 intron_variant
A/T 44579194 intron_variant
T/C 44579748 intron_variant
A/C 44579751 intron_variant
C/T 44579902 intron_variant
C/G 44579911 splice_region_variant&intron_variant
C/T 44580110 synonymous_variant p.Arg120Arg
G/T 44580146 synonymous_variant p.Val108Val
A/T 44580147 missense_variant p.Val108Asp
G/C 44580339 missense_variant p.Thr44Arg
C/T 44580350 synonymous_variant p.Gly40Gly
T/A 44580433 missense_variant p.Thr13Ser
G/C 44580530 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_03178.1
MAAKSSSSSTNVTVKAAWVLPHRTQNIREVYEVGRKLGQGQFGTTFLCTRRATGGKFACKSIPKRKLLCREDYEDVWREIQIMHHLSEHANVVRIEGAFEDSSAVHLVMELCEGGELFDRIVQKGHYSERQAARLIKTIVEVVEACHSLGVMHRDLKPENFLFDTVDEDAKLKATDFGLSVFYKPGESFCDVVGSPYYVAPEVLRKLYGPESDVWSAGVILYILLSGVPPFWAETEPGIFKQILLGKLDFQSEPWPSISDSAKDLIRKMLDQNPKTRLTAHEVLRHPWIVDDSIAPDKPLDSAVLSRLKQFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMIDTDNSGSITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAATVHLNKLEREENLVSAFSYFDKDGSGYITLDEIQQACKDFGLDDVHIDDMIKEIDQDNDGQIDYGEFTAMMRKGNGGIGRRTMRKTLNLRDAFGLVDNGSNQVIEGYFK*


CDS Sequence:
>Vu_03178.1
ATGGCGGCCAAATCGAGTTCGAGTTCAACAAACGTGACGGTGAAGGCGGCGTGGGTTTTGCCACACAGGACGCAGAACATCCGGGAGGTGTACGAGGTGGGTAGGAAGCTGGGGCAGGGGCAGTTCGGGACGACGTTCCTGTGCACGCGCCGCGCGACTGGGGGAAAGTTCGCGTGCAAGTCGATTCCCAAGCGGAAGCTTCTGTGCAGGGAGGACTACGAGGACGTGTGGCGGGAGATTCAGATAATGCACCACTTGTCAGAGCACGCTAACGTGGTTCGCATCGAGGGCGCGTTCGAGGACTCTTCCGCCGTGCACCTCGTCATGGAGCTCTGCGAGGGCGGCGAGCTCTTCGACCGGATCGTCCAGAAGGGCCACTACAGTGAGAGACAGGCGGCGAGGTTGATAAAGACCATTGTTGAGGTTGTCGAGGCTTGTCACTCGCTTGGAGTCATGCATAGGGACCTCAAGCCAGAAAACTTTCTCTTTGACACTGTTGACGAGGATGCCAAGCTAAAAGCTACCGATTTCGGGTTGTCCGTTTTTTACAAGCCTGGTGAATCGTTTTGCGACGTTGTCGGGAGCCCATACTATGTTGCACCAGAGGTCTTGCGCAAGCTCTATGGGCCTGAATCAGATGTGTGGAGTGCAGGGGTTATTTTGTACATTTTATTGAGTGGGGTGCCACCATTTTGGGCTGAAACTGAACCCGGGATCTTCAAACAGATTTTACTGGGAAAACTTGATTTTCAATCTGAGCCTTGGCCTAGCATTTCAGACAGTGCCAAGGATCTAATTCGGAAAATGCTTGATCAAAATCCAAAAACCAGGCTTACAGCACATGAAGTACTCCGCCACCCATGGATTGTTGATGACAGCATTGCACCAGATAAACCTCTAGATTCTGCAGTTTTATCACGCCTGAAACAGTTCTCTGCAATGAATAAACTGAAAAAGATGGCATTGCGGGTTATTGCCGAGAGGCTGTCTGAAGAAGAAATTGGTGGCCTGAAAGAGTTATTCAAGATGATTGACACTGACAACAGTGGATCCATAACATTTGATGAATTAAAAGACGGCCTGAAGCGAGTAGGATCTGAACTTATGGAGTCTGAAATCAAGGATCTCATGGATGCTGCAGATATTGATAAAAGTGGAACAATAGATTATGGTGAATTTATTGCTGCCACAGTTCATTTAAACAAGCTGGAGAGAGAGGAAAACCTGGTGTCAGCCTTCTCCTATTTTGACAAGGATGGTAGTGGTTACATAACCCTTGATGAGATACAACAAGCTTGTAAGGACTTTGGTTTAGACGATGTTCATATTGATGACATGATCAAGGAAATTGACCAAGATAATGATGGGCAAATAGATTATGGGGAATTCACTGCCATGATGAGAAAGGGCAATGGAGGAATTGGAAGGAGAACAATGAGAAAAACACTGAATTTAAGAGATGCTTTTGGGTTAGTAGACAATGGCTCCAATCAAGTTATTGAGGGCTACTTTAAGTAA


Promoter Sequence:
>Vu_03178::LG1:44580874-44582874(-)
TTATATCATTTTTTAGTTTGAGAATAAAAATATATCAAAGTTTGGAATAAAAATGAATTTCAATTTTATGTGAAAGTTTGAAAACTACAAACATATTTAATCCAAAATCAATTAATTGATATTAAAATAGCACGAAGACAATACAAAAATAAATACAAATATACCTGTTATCCGAACAAAATAAAATATAAAGATTATAATTAATTAAAATGTGTTGTACATGAGTACATGATAATGAAATTTATATTGTACATCATGTTGTCTACCTAATTTGAAAGTAAATATTTATAGTTAATTCAATAGTAAGTTTTTTACTTTTCTTTTAACAAAATAAGAAATAAAAATAAAACTGTTGGAGATAAACTTAAATTTTAGAATTTTATTAATAATTTTATTTAAATCTTATTTTATTAATCTTGGGTTTATAATATTTGATTTGATTTTGATAAAGATAAAGTAGATATAAGTAGTTTTGATTTTTCATTTATTTAGAAGAGTATTATTTTATTTTATTTTATTAATATAAGATAGAGATAGATTGAGTAGATTTTATTCTGAGCCTGTTAATATTTTATTGTCCGTTTTTATTATTTGTACTTTGCACAAGATTTTATTTACACTTATTTAAAGATTATCAAAGTTCAATGAGAAATAATTCCAATAAATTGAAAAGTATTATTATTTGTGTGGTCAATCCAATTATACATAAAATAAATACTTTAAACCAAAGTCTCAATTTTTACAACTGAAGTCTGAGCATTCAGAAATTGTTGTCCTATGTTTTCTATCTCTCAGGTCATTCCAATGAAGGATCAAACAATGTTCTATAAGATTAGTGGTGCATGAGCTAAAAATTAGTATATTAACAAAAGAACAAATTTTAATATATTAGAAATGAAAATTAAATAACTGCCGAAAACATAATACTATTTCAATAAAAAGGTCTCATGTATCTTTTAAGATTTATTATGACAATTTTATTCATTTAATAATACTATTTGTGACTGTGCCAATAGTTATATTACAGTGAGACGAAACACACATACATTTTAAAAACAAATTGAACGAAAATAAATCTGACAAATTGTTGGAGTACTAGAAAGATTTTGAGCATAATTTGGTTGGTTCAAGATCATGAGATTAGTCACGATAGGTCGAAGATAAAAACTAAAGGTTATGTGCAAAAGTAACTTTAAAAATGATTAGTAAGCAAACTTTAGAATTATTAGTAAATCACTCTAACAAAAATACAAACCATAAATATCATCTATTAATTGTCGAGAAGTTACTGACAAAAGAGTCACAAAAATAGATGAATTTAAATGAAAAAAAAAAGAATAACAAGAAATATGAATAACAATGACATCCTAAAAGTAAAGAATAACCATTCAATGAGTTTACATGGTTCTTTCGACAAGTTTAAAGTTCTCCACTAAGATTTGGTTTGTACACGTCATTGATTGATTAAGTTATATAAAATCAGAAGAAATATTGTGATATAAGCAACTTAATAATAATAGTAATTATAATAATAATAATAATTAGGTGGTTGTCTTTTATCAAAGGATAAGGCTTAAATATCTCTTATAGCTTTCATTTTTTTTTCTCTTCTCAGTCAACTCTTTGTACTTTTTAGACTTCAGAACTCATTTCCGCAGCCAGAGTCTCTTCCAGATAAATTTTTTAGCATGTTTTTTGAAGTAAGTTTTGCTACTTCTAAACCCAGTGATAGTGACTAAAATATTACTATATTCTTATTTATTTAAAAGCATTTTAAGAAAATGAGGCACGTAAAAACCAAATCCTCTATACAATCCCAAAAATGAAATATTTCACAATTTATAAAGCAGATGATGAGTACCTGATAAAAACAATAGCAACAATTTTTTTTAAAATACATTTGCTATTATTCAATGAGTGCAGCTTGTATAAAGACTAAAATAAAATAAAGGTATATTTGGTATATTTATCTGACAAGTGGTGCAGATGTCTGCGGATAT


Gene Sequence:
>Vu_03178(-)
AATTGGGGAAAAAGCATCATCAGATATTTAATAATCTCACATCACAACACAAAACAACATCAACTTGTGTCCGCAATTCAGTATTCCACAGTTCATTCCGCAGTTCATTCAACTCGTTCAATTCAAACTTCAAAGCAAAACACCCATAGTTCTTACAAGAAGCACAAATTTGCACACACCCTCTTTCTTCTTCCCCTAAATTTCATTCCATTTCCGCTTCCATGACATCTTCCGAGGAGAGAGAACATAATACACCATGCCCAAGAACATGTTCACACTTGTAACTCGTGACCACCACCACACCACCTGAAAAATACAAACTTTTCTTTCTGTTCCAAACTTAACGCACTGCACTGCCGTTGACTACTTTAAAGGTTTGTTTTCTGGGTGACCCGACAGAGAACAATGGCGGCCAAATCGAGTTCGAGTTCAACAAACGTGACGGTGAAGGCGGCGTGGGTTTTGCCACACAGGACGCAGAACATCCGGGAGGTGTACGAGGTGGGTAGGAAGCTGGGGCAGGGGCAGTTCGGGACGACGTTCCTGTGCACGCGCCGCGCGACTGGGGGAAAGTTCGCGTGCAAGTCGATTCCCAAGCGGAAGCTTCTGTGCAGGGAGGACTACGAGGACGTGTGGCGGGAGATTCAGATAATGCACCACTTGTCAGAGCACGCTAACGTGGTTCGCATCGAGGGCGCGTTCGAGGACTCTTCCGCCGTGCACCTCGTCATGGAGCTCTGCGAGGGCGGCGAGCTCTTCGACCGGATCGTCCAGAAGGGCCACTACAGTGAGAGACAGGCGGCGAGGTTGATAAAGACCATTGTTGAGGTTGTCGAGGCTTGTCACTCGCTTGGAGTCATGCATAGGGACCTCAAGCCAGAAAACTTTCTCTTTGACACTGTTGACGAGGATGCCAAGCTAAAAGCTACCGATTTCGGGTTGTCCGTTTTTTACAAGCCTGGTGGGTTGTGGGTTGAACCGGACTGTGTGCTTATTGTTACAATCTTCAATTTGGTTACTTTGGTGATGTGAGAGTGTTGGCGCTTCCTTTTCTTCTTTTTTTACAGTTTTTTGGTTTCTAAATTTGGGAAGTGCGTCCGGAGATTGTTGATCTGATTGAGGGTGGATGATTGATGGATTCCTTATTCCAAGTTATCTCTTGGGTTGGGATTTTAGTGTTCTGTGTGTATGGAAGGGTATCTGTTAGAAAATGTCCTGAGAAATTAGTTTCTAACTCTAGCTCAGAGATAACCAGAGTTCACCTCCAAAAAGCTGTCAACTTTTTTGGGTGGAATCATATTCTGTTTTTTAATTTGGTGGGAAATGGGTCTGATTATATTCTTGGTTAGTTGGTTATACTTCAAACTAGTGTTTACAATCTTGACTCTGCTTCTGTGTAAAAGCCTATTCCAATCTTGAATTTGCTCACTCTAATGCGTGAGAGTGTGGATGGTTTCTTGTCGTTGCTTAGTGTTTTGGTTTCTAAATTTAGGAAGTGCGGTGGGGAGATTGTTCCTCTGATTGGCGGTGGATTGATGAATTCCTTATTCCAAGGTTATTTATCTCTTGGGTTGTCTGATTCTTCGTAGAATACTTGTTATGAAAGCTTGGTCTTTTAAATGGGTTTTATTGAGAAATTAATAACTGGGTTCAATCCAAAAAATTTCACTGGTTTTGTCCTTTTAATGAAATTGGGTGATTATTTATAAAAAATGGTGAAAAGGGGGTTTGGTTATTTTGTAGGTATGACTGTGCCATTTGGATGCGTGATTGTGGAGGATGCCTTTTGGAATTGATTATGATCTTGTGGTTGCTGATAGGATGAAATTAAAGAAGCTACGGGGTGTGGGGAATAGTTGTGGTTGTTTGTGGTCTGTGTTTGTTTTTGAAATGTTATCAATTTGAGATGAAAATGTTGCCTTTCCCTTTTCAACGAAGGGGTTCACAAGTGGTTTTCCATGGTGGAACCTTAAGAATATAATCCACTGATGTCGTGTTTGATGTAGAGATTCCTAGATTTTATGTCCTCCTTTTTCAAGATGTCAATTAAATTGAATAATGAGCCTCGTTGGGTCAGAAATCCCTGTGGGCACTGAAGAATGAACTGGATTATTTTATCTGATCAGGGTTAAAATAGTTTAAAAAGGAAAGGAATCTCTAATGGAATAAGAGCAATTACCAACCTTTTGTTCCATTGTTTTGGTGTCTTAACACATGATTTTTTTTTTCCTATAAGCTTGTACTATATACGCCAATGTTTAAGTATGCTTTTTCTGCAAAACTTATAAAATAGTTGAAATCAGTACTATCTTTCTTAAACGGAATCTTATAGCTGCATCCTTTTGGTTGACAATTGACTCAGTTTTTGCCTTGCAGCAACCTGTTTCATCTTTGTGCAAATTGTGAATGAAGAGAAGTATTTGTCAGTAAAATATACTTAAAATTTAAAATTTAAGTAGAAGTTATGCAGTCTCATCTTACAGTTAAAGTTCATTTTTTGTTCCATCCTTCATTGTTAGATATAAACTGCAAATGCTTTCATTCTGTGAATGCCCCTGCCTAACACTGAGATCCTTTTCAGGTGAATCGTTTTGCGACGTTGTCGGGAGCCCATACTATGTTGCACCAGAGGTCTTGCGCAAGCTCTATGGGCCTGAATCAGATGTGTGGAGTGCAGGGGTTATTTTGTACATTTTATTGAGTGGGGTGCCACCATTTTGGGCTGGTAACTATTAGCTATGTATATGTTAAACTAATATTTGGGGATCTTATCATATTTGTGTTCTCTTCATTGATAATACTGATGCAAGTTGTTACTTTCAGAAACTGAACCCGGGATCTTCAAACAGATTTTACTGGGAAAACTTGATTTTCAATCTGAGCCTTGGCCTAGCATTTCAGACAGTGCCAAGGATCTAATTCGGAAAATGCTTGATCAAAATCCAAAAACCAGGCTTACAGCACATGAAGTACTCCGTAAGTTGCTAAAACTTCTTGTGCAAATAACGTTATTGAGTTTACAACGTTACTACATAAATTCTTAGAATGGCCCAAGAGCTGTAAGATGTCTTTCTGTGTCAGGCCACCCATGGATTGTTGATGACAGCATTGCACCAGATAAACCTCTAGATTCTGCAGTTTTATCACGCCTGAAACAGTTCTCTGCAATGAATAAACTGAAAAAGATGGCATTGCGGGTAAGGCTTCTTTAGAACTTTTTGCTAAGGCTAGAGGATTTGTGTTTGTCCAAATTACGAGATTTTACATTTTTTGTATTGAGAGGAAGAGGGATAAAAGATAATGAAGAAATGATTTGATTTTATCTAAGATGTTACAATGTACTGATGCTATTTAATATTTTTATAAAACCTAGTGTACTTACTAACCCTTATTTATACTAATCACAACCTTATTGATTACAATAACAAATCATAACCAGATAGAAAACATTGTAACGGATCTAAGATAATTATGACATAAGACAACCACATTTAGAAGATAATCCAACATATGATGAGATCTTTTTGGTTATTTCCACATATTCTAATATATGCTGAGCGTGGATGAACAAGTTTTCTTTCCAGAGTACTCACTTCTCTGTCTTCCTGTTACAATGAAAAGTTACCATATGCATATATGATATTAATTCCGGCTAACCAGATTATAATTGTTTCAACAATCATCGGAAAGCCATTTTCTTTCATAGTTACTCAATTTCTTGTGCATTCTTTTTAACAAGACCCAGAAAAGCTTCTTGGTTGTAAAGTTTATTACAAAACATGGTGGGATGCCTGCAGGAATGCAAGATGCACCATCAGGTATTACGTTGTCAACCAATTATGAATTTCATGTAATTGAAAACTGTTGACTTATATAATTAGTACTTTAAAAGTAATACATTAGGTTTTAAGAAATTAGTTGATAATGTAAATATTTAAACTGACAGGGTCAAAAATGTATTTTAATATATTTTTATTGGGAAATTAAAAAAGTAACTGTATCATTAATGACTTTTACTTTCTCTTAAAAAAAGTAAATAAATAAAGATGAACTCTCACTCTTGATCACCCTTACCCTCAAAGCAAGGCCAAGGGTATTGGAGCCAGAAAAAGCTACACGATTGGAATCAAACAATTGGATTATGTCCCAATGGATTTCTCAACAGCTATCATTGGTTAGATACACTTCATAGATATGGTGGCTGCTTTTTACTTGTATTTTTTATTCTGGTTATCCACACTCTTTTGGATTCTGTTTCTTAATTTCAGTTCTCGGTTTGGACTTATGAGTTATATATTGTTTTTTTTGAATATGGATCTTGAGGCAGCCTCATCCTTATTCTTACATGATTTTGATATCTATGAGCCTTAAAATTGGAAGACAAGGTTCAGTTCTGAAGGGAATACCAAGGTTGGAAAGCTAACATAAGTAGATATTGAGAGAAGGTTATTTACATTCCATCTTAAGAAATGTGATTTTTTCCATAATTGGTGTTCTTAGTTTTCCATTAAATAAATCAGCAAAAAGGAAATACTATGCAATCTTAGCTTGAACTTCAGGGCACCGTAATATTATCTGTTCGTAAAACATGAAGAAAGTGATCTACTTTTTAGTCCTTCTGCATTCCATCTTAATACCACAACAGTTATAGTTTTGCTTGCTAATCCTAGGTTATTGCCGAGAGGCTGTCTGAAGAAGAAATTGGTGGCCTGAAAGAGTTATTCAAGATGATTGACACTGACAACAGTGGATCCATAACATTTGATGAATTAAAAGACGGCCTGAAGCGAGTAGGATCTGAACTTATGGAGTCTGAAATCAAGGATCTCATGGATGCTGTAAGTTGATGAATGCTAATAACGGCAACATTTCTCAACATATGGCATGTTTGGATGCAAGTTAGAAGCGGTTTGGAGATCTTCTCTTCTGAACATAAAAAATAAACTTTTTCTCCGTAGAGAAGCTCTTCAAAGCTCTAAAAAACACTTTTAGTTTTGTATCCAAACAGACTCATACTGTAATCAAGTGAAATGATTGTGTGTTGACATAAATAGGAGGAATCTCACTAAGGGTCACATGATTTTCATCAAACACAAAGAGTGCTATTTTGAGAAGTGTCTGTTACGATCAATTTTTTAGTCCATCTTCATGCTGCTTTGCCTTTAATTTTGACATGAGATGTTGTAATGTGGCATGGAACAGGCAGATATTGATAAAAGTGGAACAATAGATTATGGTGAATTTATTGCTGCCACAGTTCATTTAAACAAGCTGGAGAGAGAGGAAAACCTGGTGTCAGCCTTCTCCTATTTTGACAAGGATGGTAGTGGTTACATAACCCTTGATGAGATACAACAAGCTTGTAAGGACTTTGGTTTAGACGATGTTCATATTGATGACATGATCAAGGAAATTGACCAAGATAATGTAAGTACTGTTCCATTTCTTGGCATGGCATGTTTTCTTGTAACAAGACATCAAATTTCCAAGAATTCATTTTGGAATGTGTGTGTCGGTACCAAGTTGTTTGTTGGGGTATTAATGGAGGATCTGTGGTGCAGGATGGGCAAATAGATTATGGGGAATTCACTGCCATGATGAGAAAGGGCAATGGAGGAATTGGAAGGAGAACAATGAGAAAAACACTGAATTTAAGAGATGCTTTTGGGTTAGTAGACAATGGCTCCAATCAAGTTATTGAGGGCTACTTTAAGTAACTTCTTGCAGACAAAATTCACAAAAAAATTAATTTAGTAAGTTTCTACCTTGTTTGTAGCTTCTTGACCAAATTTTGCTTATCTATTGAAAGACCCATCTTTTCTGG