Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_03200 LG1 44861484 44862221 hypothetical protein
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   embryonic meristem development, anther development, radial axis specification, embryonic meristem development, longitudinal axis specification, lignin metabolic process, pollen germination, anther development, anther development, protein phosphorylation, embryonic meristem development, pollen maturation, embryonic meristem development, response to water deprivation, embryonic meristem development, anther development, response to cold, longitudinal axis specification, response to water deprivation, longitudinal axis specification, longitudinal axis specification, response to cold, meristem maintenance, response to water deprivation, protein phosphorylation, longitudinal axis specification, protein phosphorylation, lignin metabolic process, pollen germination, lignin metabolic process
Cellular Component   is active in   plasma membrane
Cellular Component   located in   plasma membrane, plasma membrane, plasma membrane
Molecular Function   enables   protein serine/threonine kinase activity, protein binding, protein kinase activity, kinase activity, protein kinase activity, protein serine/threonine kinase activity, protein binding, protein kinase activity, protein serine/threonine kinase activity, protein binding
SNP Position Effect Amino acid change
T/C 44861509 missense_variant p.Lys238Arg
G/A 44861587 missense_variant p.Ser212Phe
C/T 44861795 missense_variant p.Glu143Lys
T/C 44861884 missense_variant p.Tyr113Cys
C/T 44861950 missense_variant p.Gly91Glu
C/T 44861957 missense_variant p.Val89Ile
C/T 44861974 missense_variant p.Arg83Gln
G/A 44861985 synonymous_variant p.Asn79Asn
G/A 44861991 synonymous_variant p.Leu77Leu
C/T 44862028 missense_variant p.Gly65Asp
C/T 44862058 missense_variant p.Gly55Asp
G/T 44862066 missense_variant p.Asp52Glu
C/T 44862075 synonymous_variant p.Ser49Ser
A/T 44862163 missense_variant p.Phe20Tyr

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_03200.1
MFSSSSHCSSVMKWSSIVKFLFFVVLFLSPSDAVLGDSDESALLRLKASFSDPAGVLSTWTSAAGTDSGYCSWSGVLCNANSRVVAVNVTGNGGNRRNGTSHPCKGFSQFPLYGFGVRRTCEGSKGSLFGNVSSFNFISVLTELRVLSLPFNALEGEIPEAIWGLEKLEVLDLEGNLISGYLPFRINGLRKLRVLNLGFNKIVGEIPGSISSLESLEVLNLAGNGLNDSVPGFVGRLKGVYLSFN*


CDS Sequence:
>Vu_03200.1
ATGTTTTCTTCTTCTTCTCATTGCAGTTCAGTGATGAAATGGAGTTCCATAGTGAAGTTTCTCTTCTTTGTGGTTCTGTTCTTGTCGCCAAGCGACGCAGTATTGGGGGATTCGGACGAATCTGCTCTCCTTCGTCTGAAGGCATCGTTTTCCGACCCCGCCGGCGTTCTCTCCACATGGACCTCCGCAGCCGGCACTGACTCTGGCTACTGCTCTTGGTCTGGTGTCCTCTGCAACGCGAACTCCCGGGTGGTCGCCGTCAACGTCACCGGAAACGGCGGCAACCGCCGCAACGGAACCTCTCACCCGTGCAAAGGTTTCTCTCAATTCCCTCTTTATGGATTCGGAGTTCGGCGAACGTGCGAAGGTAGTAAAGGTTCTCTCTTTGGAAACGTTTCTTCTTTTAATTTCATCAGTGTGCTCACGGAGCTTAGGGTTTTGTCTCTCCCCTTCAACGCGTTGGAGGGGGAAATTCCCGAAGCAATTTGGGGCTTGGAAAAGCTAGAGGTTCTCGATTTAGAAGGGAATCTAATAAGTGGATATCTTCCGTTTAGAATTAACGGCTTGAGGAAGTTGAGGGTTTTGAATCTTGGGTTTAATAAGATTGTGGGGGAGATTCCTGGTTCAATTTCGTCTCTTGAGAGTTTGGAGGTTTTGAATTTGGCTGGTAATGGATTGAATGATTCTGTGCCTGGTTTTGTTGGGAGGCTAAAAGGGGTGTATCTTTCGTTTAATTAG


Promoter Sequence:
>Vu_03200::LG1:44862221-44864221(-)
ATCCAGGCCCCGAAGTGAATAGCTGAACCCAATAACATCGCTAATAATAATGATAATAATAATAATAACAAATATTACCTTACAATTATACTCAAAGCCCCGAGTGGAGTAACAAGCACAGCAGGGGCGTAAATGTAAGCTACAAAATTAGCGATCTCTCCAACAATCACTGCAAACAATTTTGTATTAAAATCGGTAACAGAAATTCGGGAAATCATTCCGACCCATCAGAGAAAACGTTGCGTACTGGTAATCATTCCGACCCACCAGAGGGGTTGAAGCAAGTAACCATAGCCACCAACGCCTGCAAATTACAACGCAATACACGACCACGTACGAGACATTATTTCCCAGAAAAAAAAAACGATTTTTCTTATTAGAAAAAAGTAGTTGGGAGGGAGAGAGCAGAGACTTGCACGTGGGCCATTGGCACTGGCGAGTTGGAGACCCTTTTTCTTGATGATGAAGCTGGAGCCAATGAAAGCGCTGGAAACCACGGCCAACACAAACCCCGTGAAATTGCTCGAGCTCATCGACGATGATGTTGTTGTTTTTGCGTTACATTAGGCGACGAAAACGAGGTGGTTGTGTTATCTGAAAAGACAACCCTAGAAGTTGTTGTTCTCGTCCTAGATTCGGTTTGGGACTCAACGCTGCAACTAACAGAAATCTCTTTTTCTTTCAAAATTCTTTCCTTTTTTAATCAAATTGTGGCGCTCTTGTCTGTGAGGTGGATGGAAGCAATGATTCGAGAGTGGTGGAATTGAACGGCCTTGGTCTTATCTTGGACAGGTCGTTGTTATTTTGTTAGCGTCTCCATGTGTTTCCACTCTATAGTACTTCAAATCAAATTGTTTGTTGAGATATTCAATGTCTTCAAAATCCTTCCTTTTCAAACATCTATTTTGCATATAATTTCTCAAACTATCATAAAACCAATACAATATCAACAACTTTCTGATCTTGGTTTCAATCAACCCAGTTCCTCAAATTCAAATTTTCTAAATAGTTCACAACATCAATTTTAGTAAAAAAAAAAAAGTGTCTTTTTTCCGAAATTAATGATTGATAAAATTATTCAATAAGTCAATTTGAAAAAACCCACAAAATGACTCCGGTTAAAATAGAAAAACTGTACTCTAAACTCAACCAGTAAAAACTCCACTGTAAATTATGTTAAACAAACATTAATTATTCATAACTTACTCTCAGAGTATCTAATTCCCAAACCAATAGCAATATAGACATTAATTAATCTAATAGACTTAAATCTCATATGTGAAACCTATGTTCACTTCATGTGAACCACATCAAGAAATAAAATTTTAAGATTTTATGGAAAATCAAATTTTCTCTAAAACAAAATCTAATTAAATCAAATTATCTTAATTTATGTTAAGAGGTAACTTTTGATTAGAGAAAAGATAATAAATGAACTCAACGTTTTTGAAGAAAGAGTGAAGCGGATGTGATGAGAGAGAAAATTGAAAAAAATAGTAGAGTTTAGGTTTAATACCCAATTTTGTCCCCAGTTTGGTTGGGAAATCTCAATTTAGTCCCCCTTTATAAAACTAATTGTAATGGATCTTACTTGTAATTATGTGATTCAAATTAGTCCCTTCCGTTAAATATAGACAAACGGAGTTAATGGGCTGATGATGTGACAGTAGTCACTGGTTAGGTGTCTAACACGTAATTGTGTGAGTGCTTACGTGGTGTTAGGGCAGCTGATTTTAAAATTGGGTTTTAATTAGAAATTGGGTTTATTTAATTGGGTTTATCTACAACACCATCTCCCCAATCTCTCGCCTCCCTCAGCAAAGAGAACACTGTTGAGTCCGATTCTTGTTTCTCCTTCTTCCCCATCATTTTCCATCGTCTTTTTTCTTCCATATCACAGGATTAGGGTTTTCAAAAACCCTTTCTTCTTCTCTTCGACGTCACTCCTACAACGGGGAAGAAAGGGTTTTCCGTGCGATTCGGTTTTCTTTCACTGTGAG


Gene Sequence:
>Vu_03200(-)
ATGTTTTCTTCTTCTTCTCATTGCAGTTCAGTGATGAAATGGAGTTCCATAGTGAAGTTTCTCTTCTTTGTGGTTCTGTTCTTGTCGCCAAGCGACGCAGTATTGGGGGATTCGGACGAATCTGCTCTCCTTCGTCTGAAGGCATCGTTTTCCGACCCCGCCGGCGTTCTCTCCACATGGACCTCCGCAGCCGGCACTGACTCTGGCTACTGCTCTTGGTCTGGTGTCCTCTGCAACGCGAACTCCCGGGTGGTCGCCGTCAACGTCACCGGAAACGGCGGCAACCGCCGCAACGGAACCTCTCACCCGTGCAAAGGTTTCTCTCAATTCCCTCTTTATGGATTCGGAGTTCGGCGAACGTGCGAAGGTAGTAAAGGTTCTCTCTTTGGAAACGTTTCTTCTTTTAATTTCATCAGTGTGCTCACGGAGCTTAGGGTTTTGTCTCTCCCCTTCAACGCGTTGGAGGGGGAAATTCCCGAAGCAATTTGGGGCTTGGAAAAGCTAGAGGTTCTCGATTTAGAAGGGAATCTAATAAGTGGATATCTTCCGTTTAGAATTAACGGCTTGAGGAAGTTGAGGGTTTTGAATCTTGGGTTTAATAAGATTGTGGGGGAGATTCCTGGTTCAATTTCGTCTCTTGAGAGTTTGGAGGTTTTGAATTTGGCTGGTAATGGATTGAATGATTCTGTGCCTGGTTTTGTTGGGAGGCTAAAAGGGGTGTATCTTTCGTTTAATTAG