Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_03217 LG1 45031737 45032315 protein SHORT-ROOT-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   radial pattern formation, leaf development, negative regulation of mitotic cell cycle, radial pattern formation, leaf development, asymmetric cell division, regulation of transcription, DNA-templated, leaf development, iron ion homeostasis, negative gravitropism, negative gravitropism, amyloplast organization, asymmetric cell division, iron ion homeostasis, leaf development, negative regulation of mitotic cell cycle, leaf development, regulation of hormone metabolic process, regulation of transcription, DNA-templated, leaf development, negative regulation of mitotic cell cycle, negative regulation of mitotic cell cycle, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, protein binding, protein binding, sequence-specific DNA binding, DNA-binding transcription factor activity, protein binding, protein binding, protein binding, protein binding, sequence-specific DNA binding, protein binding, DNA-binding transcription factor activity, protein binding, sequence-specific DNA binding, protein binding, protein binding, DNA-binding transcription factor activity, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding
SNP Position Effect Amino acid change
C/T 45031757 missense_variant p.Ala187Thr
G/A 45031798 missense_variant p.Ser173Phe
C/T 45031807 missense_variant p.Gly170Asp
G/T 45031855 missense_variant p.Ala154Glu
A/G 45031857 synonymous_variant p.Phe153Phe
T/A 45031907 missense_variant p.Asn137Tyr
T/A 45031916 stop_gained p.Arg134*
T/C 45031939 missense_variant p.Lys126Arg
C/T 45031958 missense_variant p.Asp120Asn
G/T 45031959 synonymous_variant p.Thr119Thr
G/A 45031973 synonymous_variant p.Leu115Leu
G/T 45032095 missense_variant p.Thr74Lys
A/G 45032167 missense_variant p.Ile50Thr
A/G 45032214 synonymous_variant p.Ser34Ser
C/T 45032296 missense_variant p.Cys7Tyr
A/G 45032297 missense_variant p.Cys7Arg
G/T 45032311 missense_variant p.Ala2Glu

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_03217.1
MAKTCPCLLPNTTTHTTTYPPPPPQPTPSAPLFSRVTDARDRTYRTLASISEKTCSFESTRKTVLKFQEVGPWTTFGHAASNDAILEALEGNPKLHILDISNTYCTQWPTLPEALATRTDETPHLKLTTVVTERTDNSVQRVMKEIGTRMEKFARLMGVPFKFNVVHHVGDLSDLNFSQLNLKDDEALAITA*


CDS Sequence:
>Vu_03217.1
ATGGCGAAGACTTGTCCTTGTCTTCTTCCAAACACTACTACCCATACCACAACGTATCCACCACCACCACCACAACCAACACCTTCAGCACCACTGTTCAGTCGCGTCACTGATGCGAGAGACCGAACCTACCGAACCTTGGCCTCCATATCGGAGAAAACATGCTCCTTCGAGTCAACGAGGAAGACGGTGTTGAAATTCCAAGAAGTCGGCCCCTGGACAACTTTCGGACACGCGGCGTCCAACGACGCCATCTTAGAAGCATTAGAAGGAAACCCCAAATTGCACATACTTGACATCAGCAACACCTATTGCACTCAATGGCCAACACTTCCGGAGGCACTGGCAACTCGAACCGACGAAACTCCGCACCTCAAGTTAACCACCGTCGTCACCGAGAGAACCGATAACTCCGTGCAGCGCGTAATGAAGGAAATCGGAACAAGAATGGAGAAGTTTGCGCGACTCATGGGCGTTCCGTTCAAGTTCAACGTCGTTCATCACGTCGGCGATCTCTCTGACCTTAATTTCTCTCAACTCAACCTCAAAGACGACGAGGCCCTGGCCATCACTGCGTGA


Promoter Sequence:
>Vu_03217::LG1:45032315-45034315(-)
TTCGCTTTAAAGCCTGAACTGTATTGGACACATAAAACCAGAAAAAGTCTGAATTCTGAAATGTACCCAAGACTGACACTGAAGTATCTTATAAGAAAAGCAATATAAAACAATAAAACCTATTTATGTTCAACCAACAACACCATGTGCTTTTCATGACATTGTGTTAAGCAATTCATTCTAATTAACATATTTTGCTGATAAATGTGGCTCTTAGACAAGAATCAAAAACACCCTCTTGAAGTTTCTATGGTGAAGTTCAAATCTCACTACTATTCGACTATCATTCTTCTAATAAAAAGTTTAATTTCAGCTCACAAGACAAGCTACATGAAACTCAGTAGTAGAAGAAGATGAATGAATTGCATGAGAGTGAGACTGAGACTGAATGAAATACAGCGTTTGTTTCATTGGAAGAAATGGCAATGAAAGGCATTGTAGAATTACCTGAGGAGTGCTGCGAGGATAGTGAATGGAACCTGAAAAGAGTATTCTCCTGTGGCCATCAATGATAAGGGATCTTCCATCATATGTGACCTCTGTTTCAAAACCACTATCTCCCATTGTTAATGTCAACGACCCCAGCAGCAGCAGCAGCAGAATCACCACCAAAGCCACTAAATTTTCCATCTCCAATAACTGTTTTATCAGAGACTTGATTCTGCAGTTCTCTTTCTCTGAACCCTGTCAGATATTGCATATATAGTAATGTTGTTTACATGCAACAAATTATGTTACAACTTCAAAACCTTTTATGGGTGACATTGCCACCAAGAAAGTATGACTTTATAGAAATTAATGGGAGACAACCAAATACTGTACTAACCTTATCAACGTGGCCAAAATATGGCAATAATGAAATGACAGGGACAGCTGCAACAACTCCTCTTCTATGCAGCTGTTGATGTAACAACTCCCTTTCTTGCCAATACTCTGATTCAATAATGCAAGTATTCGTATAAGGTTGTCTGTTATTGTACAAATTATATGTTGGCTTACATTCAACCACTTTCTTTCAATTTAAAATAAATGTTTTTTAAATTACTTTTTTTAATATCAAAGTTGAAAAAATACTTGTTTAAAATAAGTATATTAGACAAATACATAAAAAAAGTAAAAATTATTTTAAGTTATTAAATAGTACTTGTTTAGAAAAAGAAAACAAAGAAACGAACTCATAATATTAAAGTATAAGTATAAATACACCTTGCGCATCTCTCATAAAAGTTCTTAGCAAGGTTCTAAAACTCAATTCTCGTATAAAACTCCTTTTGGTACTGTGGTATTTTAAAATTAAGATATGCATTTTAAGAATTTTTAAAAAATTATTTAATTCTTATAATTATAGCTCCTATGCCTTTAGGTCAGAAATATCTATTAACTTTATATGTATAATTAACATTTTCTAACTATTCTTTTTTCGGCCTTATAGTTTAAGTATATTTAGTTACGTCGAAAAATGAAAAGAATGATCGCTAATATTCTCAAAGTTAGGAAGAATATTTCAAATTAAGATTATTTTATAGATTTTTAAATACATAATTTAATTCAGTAATATACTCATTAATATAAATAATATATATAATTTTTATTATAAAATTTTACTTTATTATAAAATTGTAATTTGGTTTTTTTCTCTTTCTATATACAAGACATATTAATATGACGTGACAATCATGATATACAATACTGGGACGTTGTTCTCTCCACTACCGCCCTTTACCTCCTTCACCTCCTCAAAATTTAATTTATTTTTAAAACTATCCTTCTGTTAAAATTTTTTTACCTTTTTATTATTTTTTTGTTGTTTATTGATGTGGGTTAAATGGATACCTTATTTAGGTTTGTAAGTTTTCACCAGCAACAACATCATCAACCACAACTCGATCCATCCCTCAACTCCATCACCAACAGAACTTTTAGCAGTTCCAAATCATCTAGACAAAACTACTACCATTACTCCCACCAAGAAGACCAAGAATGCTTCAACTTTTACATGG


Gene Sequence:
>Vu_03217(-)
ATGGCGAAGACTTGTCCTTGTCTTCTTCCAAACACTACTACCCATACCACAACGTATCCACCACCACCACCACAACCAACACCTTCAGCACCACTGTTCAGTCGCGTCACTGATGCGAGAGACCGAACCTACCGAACCTTGGCCTCCATATCGGAGAAAACATGCTCCTTCGAGTCAACGAGGAAGACGGTGTTGAAATTCCAAGAAGTCGGCCCCTGGACAACTTTCGGACACGCGGCGTCCAACGACGCCATCTTAGAAGCATTAGAAGGAAACCCCAAATTGCACATACTTGACATCAGCAACACCTATTGCACTCAATGGCCAACACTTCCGGAGGCACTGGCAACTCGAACCGACGAAACTCCGCACCTCAAGTTAACCACCGTCGTCACCGAGAGAACCGATAACTCCGTGCAGCGCGTAATGAAGGAAATCGGAACAAGAATGGAGAAGTTTGCGCGACTCATGGGCGTTCCGTTCAAGTTCAACGTCGTTCATCACGTCGGCGATCTCTCTGACCTTAATTTCTCTCAACTCAACCTCAAAGACGACGAGGCCCTGGCCATCACTGCGTGA