Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_03231 LG1 45158495 45159169 PREDICTED: nuclear transcription factor Y subunit B-7
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, response to water deprivation, response to water deprivation, response to heat, regulation of transcription by RNA polymerase II, response to heat, response to water deprivation
Cellular Component   is active in   CCAAT-binding factor complex
Cellular Component   located in   nucleus
Molecular Function   enables   RNA polymerase II cis-regulatory region sequence-specific DNA binding, protein binding, protein binding, protein binding, DNA-binding transcription factor activity, protein binding, DNA-binding transcription factor activity, RNA polymerase II-specific, protein binding, DNA-binding transcription activator activity, RNA polymerase II-specific, protein binding, protein binding, protein binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, protein binding, protein binding, protein heterodimerization activity
Pathway   B 09151 Immune system   C 04612 Antigen processing and presentation [PATH:ko04612]
SNP Position Effect Amino acid change
A/G 45158663 synonymous_variant p.Ser169Ser
C/T 45158664 missense_variant p.Ser169Asn
G/A 45158695 stop_gained p.Gln159*
G/A 45158700 missense_variant p.Ser157Phe
C/T 45158779 missense_variant p.Val131Ile
G/T 45158780 stop_gained p.Tyr130*
T/C 45159114 missense_variant p.Lys19Arg

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_03231.1
MEDESHNTLPNGFNSASPKSPCLKTTNNTTNTTSTTQNNNINNNHNNNNNHNKEQDRFLPIANVGRIMKKVIPSNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDVIWAITTLGFEDYVEPLKIYLQKYKEIEGEKLNIPKQLRSEQRLQQHQQNNSNSSQDDNNQQFNGAYASTNLISQPPYVTSDQKFPLPFSPNSIQNHQIDSVGHWYE*


CDS Sequence:
>Vu_03231.1
ATGGAAGATGAGAGCCATAACACTTTGCCAAATGGTTTTAACTCTGCAAGCCCCAAAAGCCCTTGCTTAAAGACAACCAACAACACAACAAACACCACCTCAACCACACAAAACAACAACATCAACAATAACCATAATAACAACAATAACCACAACAAAGAACAAGACCGGTTTCTCCCCATTGCCAACGTGGGAAGAATCATGAAAAAGGTTATTCCTTCCAATGGGAAAATCTCCAAGGACGCAAAGGAAACTGTCCAAGAGTGTGTCTCTGAGTTCATCAGCTTTGTCACCGGAGAAGCCTCAGACAAATGTCAGAGGGAGAAGAGAAAGACCATCAACGGTGATGATGTGATTTGGGCCATCACAACCTTAGGGTTTGAAGATTACGTTGAACCCTTGAAAATTTACCTTCAGAAATATAAAGAGATTGAAGGAGAAAAACTTAACATTCCAAAGCAACTTCGTTCTGAGCAAAGGCTACAACAGCACCAACAAAATAACAGTAACAGTAGCCAAGACGATAATAACCAACAATTCAATGGTGCATATGCCTCCACCAATCTCATTTCTCAGCCTCCATATGTCACCTCTGATCAGAAGTTTCCGTTACCCTTTTCCCCAAACTCCATTCAGAATCACCAGATTGATTCTGTGGGACACTGGTACGAATAA


Promoter Sequence:
>Vu_03231::LG1:45159169-45161169(-)
TCTTATGGCACGCTCCAAGTGAACTCCTAAGATCTAAATCGAACGGTAAGGAACTCTCCTCGTGAACTCTTACCTTGATCTTAAGACACGCTCCAAGTGAACTCTTGAGATCTAAACCTAACGGTGATGAACGCTTCCGTAACTCTCCCTCAAGCGTCTTCGATCTAGGAAAAGTTCGAACTCCTAGATCCCCTATTCGGTGAGTAGTGCTTCTGTGGCTCTCACCTTAGCATTTTTTATCTGAGGGAACGCTCCAAGGGAACTCTTAGTGCAAAAACTGCTTAGTCAATAAAGAACGTGTGCTATTGTATGAATCATCATGACCCTAGAAACTCAGGTAAAATCCTGTGCCGATCAGTATAACTTTACAAACCCAATGCAATATCAAACATTTTGCTAGGGCTTGGGGGGCTTATGTTACTATGGGCTCATAGCCGACCGAACGGTACAGGTACAAGAGAACCCCTAAGTTATTTTGGGCTCATGGTCGACCGAGTGGTAAAGGTGCACCGATCGAACGGACAACGTGCAGGAAAAAGCCTCTCAGTTGTTCGGTCCTGACAACTAAGTAGCAGAGTTAAGACACAATAAATGTGATAACGGCTACTGTTAAATAATTAAGGTTTGAATTAATGACCATTAAGAGGTAAATTAATTGGTCAGATTCCTTTAAACTTTATAAATAAGGGTTTAGGTTCGAGGTAAACTCACGTTTTTAAACTCACTACAAAACTATAAGACCTAGAAAGAAAATTTTTGACTTGAACGTCAGAGTGTCTTTTGCAGGTCACCCCATTCGGTGTTCGGTTACCGAAACTAAGAGAGACATAACACTTGGCATGCATGATTAACAAGACCGATCGGAGCTCAGAACCAAGAGACCGTTCGACAAAGACTGGAAGATGTTCAGCGAAGATCATCGTCCTATTTCAACATAAACAATTACTAAAGTTTATCAAAATTTTATATAACTCCAAATATTTATAACTTTCAAACCAGTAGTAATCATCATAATACCAAAACTAATCATAGTTCTTTTTATTTCTCCTTATAACATATGATATGTTACTCATAGATTGCAACAAATGTCTTCGACAGAAAGTCATGGTTATGATCTTTCACCAATTTTGAACTGTACACAATCATTTCTTACTCACCCTAAGATGCATCACGGTTTTACAATTTGTTCTTTAATACGTCCCTCCATATAAGTTTCTTCTTCTTTTGGTTTACAAGCCTTTGAAACAAAAATCTTTCAAAATCACCTTATCATATAATAACTTCCTTCTTTTTCTTTACACTAAAACCCATTTTCTAAAGTATATATGTTTGATATAAATCACAGACTTCATATCTATATGTATACATTCACTTTGTTCCATATTTATCCTATACAAACAACATTCATTTTTCAAAATTTACTTTATTGAAAGATAATATACATATATACATACATATATGATTATATACGTAATTAATATTTTAAATCTAAAATAACAAAACATAAAACAAGAAGCAGGTGGAGAAATACACTTATAATGACTCGATGTTTTCTCACTTTAATGGTTGACCAACATATATGCACACATACACACATATATATATCATTATCATAAATAATCTTATCAGTTATATATTTAATACATTTGCATAATATAATTATCGTAAAGTTGATTATTAGAACCAAAGATGAAAAGAATATATAATATAAACATAGTTGTTGATTTTGAATGAATATCACAGACATATAAAGAAAGAAAGAGAGTTTTGGATGTCAATAATAGTATTGTAATCTAACATCTAGAGCGAGTCCGGTGGATTTGATTGGTGAAAAAATCCACAGCACTCATTTTTTTGTTTTCGAATTTTCCTTGTCTTAACCCTTCTTGCATGCCTAGTTTTATGCCTCTCTTTCAGTTTACCTACACAGTAATATAATATGCAACATAATTAAGTAATAAATATTATTCTTCTTCATTTCCTTTATCTCCAACATTGTC


Gene Sequence:
>Vu_03231(-)
ATGGAAGATGAGAGCCATAACACTTTGCCAAATGGTTTTAACTCTGCAAGCCCCAAAAGCCCTTGCTTAAAGACAACCAACAACACAACAAACACCACCTCAACCACACAAAACAACAACATCAACAATAACCATAATAACAACAATAACCACAACAAAGAACAAGACCGGTTTCTCCCCATTGCCAACGTGGGAAGAATCATGAAAAAGGTTATTCCTTCCAATGGGAAAATCTCCAAGGACGCAAAGGAAACTGTCCAAGAGTGTGTCTCTGAGTTCATCAGCTTTGTCACCGGAGAAGCCTCAGACAAATGTCAGAGGGAGAAGAGAAAGACCATCAACGGTGATGATGTGATTTGGGCCATCACAACCTTAGGGTTTGAAGATTACGTTGAACCCTTGAAAATTTACCTTCAGAAATATAAAGAGATTGAAGGAGAAAAACTTAACATTCCAAAGCAACTTCGTTCTGAGCAAAGGCTACAACAGCACCAACAAAATAACAGTAACAGTAGCCAAGACGATAATAACCAACAATTCAATGGTGCATATGCCTCCACCAATCTCATTTCTCAGCCTCCATATGTCACCTCTGATCAGAAGTTTCCGTTACCCTTTTCCCCAAACTCCATTCAGAATCACCAGATTGATTCTGTGGGACACTGGTACGAATAA