Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_03259	LG1	45403649	45404479	PREDICTED: transcription factor HEC3-like	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	polar nucleus fusion, polar nucleus fusion, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, polar nucleus fusion, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component	located in	nucleus, nucleus
Molecular Function	enables	protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein dimerization activity, protein binding, protein binding, DNA-binding transcription factor activity, protein binding, protein binding, protein binding, protein binding, protein binding, DNA-binding transcription factor activity

SNP	Position	Effect	Amino acid change
C/G	45403774	missense_variant	p.Ala236Pro
G/A	45404063	synonymous_variant	p.Asp139Asp

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_03259.1

MDTNQNTTTSAFTNVNTTWNLEKMETNEQHQHHDHIILQVQDPLASGIWSNNYPHSHNPNLLQMHQTPPTTTSSVVAPPSSSGFLGDILGVHSMEEDEEPEEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSIPHPSQPPQCIGFATTNASTLLLAPSCDWSFAPNVLLSSTAVTAATASSSSMDMPAGLGFDGHGHGCDGSSSFNQHEVISE*

CDS Sequence:
>Vu_03259.1

ATGGACACCAACCAGAACACCACCACAAGTGCATTCACAAATGTGAACACCACTTGGAATCTTGAAAAGATGGAAACAAACGAACAACATCAACATCATGACCATATTATTCTCCAAGTTCAAGACCCTCTTGCTTCTGGGATTTGGTCCAACAACTACCCCCACAGTCACAACCCCAACCTTCTTCAAATGCATCAAACACCCCCCACGACAACCTCGTCCGTTGTGGCCCCACCCTCCTCCTCGGGGTTCCTTGGAGACATACTGGGTGTTCACAGCATGGAAGAAGACGAGGAGCCGGAAGAAGAGCTGGGAGCCATGAAGGAGATGATGTACAAGATAGCTGCTATGCAACCGGTGGACATCGACCCCGCCACCATCCGTAAACCAAAGAGAAGAAACGTTCGCATCAGCGACGACCCTCAGAGCGTGGCTGCACGCCACAGGAGAGAGAGGATCAGCGAGAAAATCCGCATCCTCCAAAGACTCGTTCCCGGGGGAACCAAAATGGACACTGCTTCAATGCTTGACGAAGCCATTCGCTATGTTAAGTTCCTCAAGAGACAAATCAGGTTGCTTCAATCCATTCCTCACCCTTCCCAGCCACCACAATGCATTGGTTTTGCCACCACAAACGCTAGCACCTTGCTATTAGCCCCTTCCTGTGATTGGTCTTTTGCACCAAACGTGTTACTCAGCTCCACCGCCGTGACCGCAGCCACGGCCTCTTCCTCCTCGATGGACATGCCGGCGGGACTCGGATTCGACGGCCATGGCCATGGTTGTGACGGTTCCTCCAGCTTTAACCAGCACGAGGTAATCAGTGAATAA

Promoter Sequence:
>Vu_03259::LG1:45404479-45406479(-)

CAAACTTCGTTCGAGAAAAGTTTGAGCAGAGAAGAGGATCTCGCGCGCTAAGATAAAGTGAATGAATTTTCAATCTCCCGCTCAAATTTTTATTGAATTCACTGGCCTTTTGACGTCTAACGCTCAGACATTCGACGTTTTATATCGTCTTACGTCGAATTATAATTTTAAACGACGCTTAATAATTATATTTATTTACAAAATTGTCACCAGTTATTTTTAACGTTGGTTATTTAGTGATTAAACGTCAAACGCGTGACGTTATACGTTATTTTTTTTATTGGTGTGTTACTGTTGACATTAGGATAAGATACTCACCCTTGAAAAATAGAACACTGGTTTGACGAATTACACTCAAGGTTAATTTAGGCACACAAATTAACAAAATAAACAGATAAGTTTTCTTGTATATTAAAATAATTTTATAGTAGAAGCGAAAAAACTTGTCATCGTACATTATTTTCCGAGCTTGTCATTTATCTCTCTCATTAATTACTACTTGCACATTTTACACACCATTTTTTTCTTCTCCTTTCTTGGTAAGTGTGTTGTTCACAAAATAGTGATTAAATTTTCTTGAAACACTGAAAGAACAGATAAACTAAAACATTATTTTTTTTTTGAAGTGTGATTGATAGAAAGAATTGGAGCTTTTGCCGATAAAATAAAGAAAAAAGTTATTGATTTAAAATTTGGTAAGAGTGTGAGGTGTGAGTTTGAGGAGGCAATGTAACTGTTCATCAATCCCGAAATTGAGGGAATTGAAGGAGACTGGAATATACCAAATGGCAAGAGGCACATTAAAATGGTAATAAAGGAGAAGCAGCCCTAGGATTTCAGTGCCTCAAAAATCAATTTGGAGAGAGAGACCCATCTACTCTTTCCTAGGTGCAACTCTTTTCACCGCTACCTTTCTGCTATCACTCATGTCATCGCTCGTATACCAGTTTAACCTAATCTAATCTAAATTTCATACCATCATTTTTGGTCGTGTCAATTTTCTGGAAAGGTCTTGTCATGTCTCAAGTAATAATAATTGGATCTTTGACTTCACATTTTCATCAAAATCCTTCATTCTCGCCATTAAAAACATCCATTTAACAAATATTCTCAAGCTTTCCGAAATCATGTTTCGAGAAAAAAAACTCTAATTTTACATAGTGACAGTAGTTAACACGGAACTCGTAACATCATCGTTGATTGTGTTAGTGGTTTAGGAGTTAAAAAACATTGTGGTAATGGTAATAATAACCATTTTGGTAGTTTTCCACGTAAAACAAAGGCGTTGTTTTGTTGACTTGGTCTTTTTTCTTAACAAGAAAAGCAAGCAGACACAGACTTTAATCCCATCATGGAAATTAAATTAATTTAATTGACATATAGAAGTTTTGAGTCCGTGCAGATTAACTAGGTTTTGGTGTGTGAAGGGTGAGATAGCATTGATAGTATTTCGTAGAAGAGCGCATTGAATCTCCTTTAATCTGCTTTACCACCTTTTGTTTTTATTGATTCATGGACATGCTTTTTGCAGTGACTCCCCCTTTCAGTAAAAACCCGTTCCTAATACTTGCTCTCCCTCTTTCTCTCCTCCATGGGGTCCCTCTCTAGGGTCTACCAACCTTTTACACCCATCAAAGATCCTACAACATGTTAATTCAGAGACACCCATAAAAGCTTCAAGGTAAGGCTAATTAACCTTCTATTCCTTCAATTCAACCACACAGCTGTCATCCTCTTATACGCACCAGTACTTCTCATACTTTGATTTTATGTTTATAAGGGGGTTTCATTTCAAGTCCTATCAAGATCACACCAAAAATTAAACCCTGTTTATTCTTCCTTCATGCTGCTACCTAGCTACCTCTCTCTAATCTCCTTCCCTTTTTTCTTTCCTTTTCAGCCAATTAATCTTTAACAAAACCAACAAATTAATCTACAACACACCGATCTGAAGCAGCTACCCCAATCCCATATTTCTCGTATTTGTCGATTTGGTCGAC

Gene Sequence:

>Vu_03259(-)