Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_03452 LG1 47584783 47587178 PREDICTED: homeobox-leucine zipper protein ATHB-6-like
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Annotations  
category   relationship type   keyword
Biological Process   involved in   positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, photoperiodism, flowering, negative regulation of cell growth, negative regulation of cell growth, negative regulation of cell growth, photoperiodism, flowering, negative regulation of cell growth, regulation of timing of transition from vegetative to reproductive phase, photoperiodism, flowering, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, response to blue light, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, photoperiodism, flowering, photoperiodism, flowering, positive regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus
Molecular Function   enables   sequence-specific DNA binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, RNA polymerase II-specific, sequence-specific DNA binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
G/T 47584883 3_prime_UTR_variant
C/T 47585404 synonymous_variant p.Glu274Glu
A/G 47585765 missense_variant p.Leu154Pro
G/A 47587126 5_prime_UTR_premature_start_codon_gain_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_03452.1
MKRLGSSDSLGALMTICPPTDEHSPRNNHVYGREFQSMLEGLDDEGCVEEPGHHAEKKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDSLKLNYDTLQQDNEALLKEIKELKSRLLLQEESNTESDVSVKEEMITLQDSNPLCETAIPGSESKELSYECFNKSDEVLGAFKDGSSDSDSSAILNEENANNNDNSPNNGTISSSGVMQSQSFLSSSSPMNCFQFQKQFPTQYVKMEEHNFLSADEACNFFADEQAPTLQWYCSEEWS*


CDS Sequence:
>Vu_03452.1
ATGAAGAGACTTGGCAGCTCCGATTCTCTGGGTGCTCTCATGACCATTTGTCCACCAACAGACGAACACAGTCCGAGGAACAACCACGTGTATGGCAGGGAGTTCCAGTCTATGTTGGAAGGACTAGACGATGAAGGGTGTGTGGAGGAACCAGGACACCACGCCGAGAAGAAACGAAGACTGAGCGTGGATCAGGTGAAAGCTTTGGAGAAGAACTTCGAAGTAGAGAACAAACTCGAACCTGACAGAAAGGTGAAGCTGGCACAAGAACTTGGCTTGCAACCAAGACAAGTTGCGGTTTGGTTCCAAAACCGTCGAGCCAGATGGAAAACGAAGCAATTGGAAAGAGACTATGGAGTCCTCAAAGCCAATTATGATTCCCTCAAACTTAATTACGACACCCTTCAACAAGACAACGAAGCCTTACTCAAAGAGATAAAGGAATTGAAATCAAGGTTGCTGCTGCAAGAAGAGAGCAACACTGAAAGCGATGTTTCGGTGAAGGAAGAGATGATAACACTGCAAGATAGTAACCCACTTTGTGAAACCGCCATTCCTGGATCCGAATCTAAGGAGTTGAGTTACGAATGCTTCAACAAGAGTGATGAAGTTTTAGGGGCTTTCAAAGACGGGTCTTCCGACAGCGACTCCAGCGCGATCTTGAACGAAGAGAATGCCAACAACAACGACAACAGTCCCAACAACGGGACGATTTCGTCTTCTGGGGTTATGCAAAGTCAGAGCTTTTTGTCATCGTCTTCTCCGATGAACTGTTTCCAGTTCCAGAAACAGTTTCCGACGCAGTACGTGAAGATGGAGGAGCATAATTTTCTGAGCGCGGACGAGGCGTGCAATTTCTTCGCGGATGAACAAGCGCCCACGCTGCAGTGGTACTGTTCAGAGGAGTGGAGTTAA


Promoter Sequence:
>Vu_03452::LG1:47587178-47589178(-)
TTTAGCTTTTGAAAATTTGTTTGTGAGGAAACTAAAATTTTATTGAGTATACCAATTAACTACTAGTCACTCTACACTTGACAAAAGATTTAAATGTGTCGTACCATTGAAGTTGTCTTACAAAACAAAATTACATAATATGGACAGATATATCCACGTGACTAGTTGAATCTCTATAACATATAACAAATTACAATTCTTTTATCATACTGTAGTTTGTGTCATAAAAACTTCATTCGTGTCTCTCTACTTAATTTTATATCTCAAATTCAATACACAACTTAAATATTTTAACACGGTATTTTCTATTATAAATAATTATGTTTACAATAATATCACAATAGATAAATAACATGATTTTGCCATATAAATTAATACTAATAAATTTGAATTCACCCGTCAATACACTATAACAGTATTCAAGTATATTGATAAGATATACTAGTGAAATATAAACAATTATTTTATTTTGAAACATTTTTAAACATATTATTTAAAGTCTAAAAATATTGTCTTCATTCAAACACTATTTATGTTTTCTCCGTGAATTAAAAAAAACATTTAAATTCATTCAACAAATTAAATACATATCTAAATTTTCTTAATCATTAATTTTGTTTATTTAACGAGTGAGATACTTGTCTGATAAACAAAAATCTTGAATATTTATTGAAATGAATTTAGTTCATCAATCCTATTGTTATCTAATGACCAAAATCTTAAGTATTTAAATAAATAAATTATATATGCATCGAGAAAACTAAATATGAGAATCAATTTATAATATGGGCTGAAGTTGACTTTAGAATAGGAGATGTCGAGAAGGGCACCATTTATTAGAAGAAATGAAAAAAAAAATATGAACACCACAAAAAAAACATATAAATTTTGCAAATAAGGAAAACACTTGACTCAGAAGTTGTCATGAAAATCTTTGTAGTTCTTATAACTACTTTTCTCATTTTTATAAAAAGATAACGATACTTTAACAATATTTTTTAACAACATTTTAACATTATTTATGTGTCATTATGTGATTGGTCCATGTTAATGTTAATGAGTATTATTATTAACTGTAAAGTAATTTTGGATTAATAACAAAATGATATGTAGATGATGTTAAAATATTATCACAAAAATGATATCGAATTATGATTATCTTTTATAAAATCTCATCTCTCACTCTCAAATTTTAATAAGAACGACTATCAATGCAGTGCCTTGATTCAAGGTTTGGTAATTATTTTTAGAAGTGTCTTTTATTGTAGGTGTAACTATTCCAATTTCTCTCATGAGCAGAGGGGTCCTAATTACCTTGAAGTCTTATGTGTTCTTTGTTTACGAATTACTTGATATAAGTGGTACAACTATTTCATTTAAAAGTTTGCTTTATTTTATATTTTGGTCGATAAAAGTTAAATTTAATGCACTTAGTATCTTGTTTGATATTTTGTGAAACATGATATAACTGAAAGTAGATAGTTGTTGGACAAAAAAACTTTTGCTGTCGAAGAGAAATGCCTCAAAGAATCAACATGTGACTCGTTCAATTTTAAAATGCATTTATAAAAAGTATACTTAAAAATTGTTCGATTTTAAAATTTGGATAAATATGTAGATAGAAATTTTCATCTTTAATGAAAACATGTAATAATACTATTAAAAGAAATGTTAAAATTAGACATATTTATTTGATTGATAAGAAGAATAAATTATTATTACTTGGGTGACGTAAGAAACCTTAAGCCGGCTTAAACAGTGGACGCAAGCTGCCGAAAGCCACGCCGTTTCCATTTTCATCTGTCCACACTCTGCGCTACCTCCCAAATACCGCTCCTCGAGGAAACTCAAGCTTAACCGGCTAACTCGGTACCCAAAAAAGTTGCATTTGGGTTGAATTTGGGTTCATTTCATAGCCAACCGCAGTAGCAGTCACTTAACCCCAGTCAGATTTTAACCAAGGGTGGTTTATTTAAAGACACAAACTCTCACCTAAGCTC


Gene Sequence:
>Vu_03452(-)
GCCTGTGAACTTGTTCACCCTTCTCCTCACTCCTCACTCCTCACTCACCCTTCGTTTTCTTCATTTTCTTCATTTTTCTCTTCCTCTTTCTCTTCACTGTAACTCTTCCCCACCCATCACACTTCATCACTGATGATGTAGATAGAGAGTGAAAACAGACCACTGTGTCCACTCCGAAAGAGATTGCTCACTCCTACTTCCTTCGTCTTGGAATTGTTTGATTCATGGGTGAAGAGGGAGAAGAGGTGTCAATAGAGAAGGAACAAAGCATGGGAGTTTATGCAAATGAGTGGTTCTGTACTACTTCCTCTGCAAATTGGCCTCTTTTAAGACACCACAATTCATCTTCAATGCCTCCCTTTAAGTAAAACACGAAAACAAAACGAACCTTTTCTCACCTTTTCTTCTTAGATCTTAATATACATTGCCTAAACAAAATAAAGGGATCAAATTTAAGCTCCTTGATCTAATAAGATCCGTGCTTTGCACTCATGAAGAGACTTGGCAGCTCCGATTCTCTGGGTGCTCTCATGACCATTTGTCCACCAACAGGTTAATTCAATTAAAGCTTCGTTTTTTATTTTTTTTTTCTCAAATTAATTCAGACAGATATAGATCCATGATGCGTGTTTCGTGTTTGTGACTTGTCTTGTCTCGAACTTTTTTTGTGATCAACCACACCAATTACAAACCTTTCCTGTTTTTTAAATCACCCCAAATTCCTTATTCTGTACTTTGTTTTTGCATTACAATTTACAACTCATCGTGTTATGCTGTGTGCGTTTGTTTCAAGGGACAAACAACAAAACCAGTCGCACTAACCATGATTATGTCCGATTTGCATTCAGACGAACACAGTCCGAGGAACAACCACGTGTATGGCAGGGAGTTCCAGTCTATGTTGGAAGGACTAGACGATGAAGGGTGTGTGGAGGAACCAGGACACCACGCCGAGAAGAAACGAAGACTGAGCGTGGATCAGGTGAAAGCTTTGGAGAAGAACTTCGAAGTAGAGAACAAACTCGAACCTGACAGAAAGGTGAAGCTGGCACAAGAACTTGGCTTGCAACCAAGACAAGTTGCGGTTTGGTTCCAAAACCGTCGAGCCAGATGGAAAACGAAGCAATTGGAAAGAGACTATGGAGTCCTCAAAGCCAATTATGATTCCCTCAAACTTAATTACGACACCCTTCAACAAGACAACGAAGCCTTACTCAAAGAGGTAGAATCTCGTCAGTCTAGAATAAAAAAGAAATCAAACAAACAAACAAGCAAACAATTTGCATTCATCACTAATTTATTAGCTTTTTAAAGTTTTGTCTTTAATTTTTAGTAGGGGAGTTCTTTTCTGGAAAGAGTATTAAAAGGTTGGTTTGTTGTGTTGGCAGATAAAGGAATTGAAATCAAGGTTGCTGCTGCAAGAAGAGAGCAACACTGAAAGCGATGTTTCGGTGAAGGAAGAGATGATAACACTGCAAGATAGTAACCCACTTTGTGAAACCGCCATTCCTGGATCCGAATCTAAGGAGTTGAGTTACGAATGCTTCAACAAGAGTGATGAAGTTTTAGGGGCTTTCAAAGACGGGTCTTCCGACAGCGACTCCAGCGCGATCTTGAACGAAGAGAATGCCAACAACAACGACAACAGTCCCAACAACGGGACGATTTCGTCTTCTGGGGTTATGCAAAGTCAGAGCTTTTTGTCATCGTCTTCTCCGATGAACTGTTTCCAGTTCCAGAAACAGTTTCCGACGCAGTACGTGAAGATGGAGGAGCATAATTTTCTGAGCGCGGACGAGGCGTGCAATTTCTTCGCGGATGAACAAGCGCCCACGCTGCAGTGGTACTGTTCAGAGGAGTGGAGTTAAGAAGATGAACACAGAAAGAAAAAAAAAGGAAGAAGATGAAGAAGAAGAAAAATCATGGCCACCTTTTTGAGATGAGGATTAGAGAGAAGAATAAGGCATTATTTTGCAGGGTGTATAGTAATGGAGAAAGAAGCTTTGTAAAAAGGGAAAGGGTTGCATGGTGAAGACTGCAGAAGTGAGAGAAACTGAAGAGTTTGAGAGAGAGAAGAAGGGGTTACAGGAACAGGGTGGGGTCGGAGAAGAGAGGTTGATGACGAGAAAAGGGTAAAAATAATAATAATCATCAATCTCTCGGGCGTGCGGGTAATTTATGAATAATAATAATAATAATGATTAGGTCCTAATGAAATCAAATCTATCTATCTATCTATGCTGTAAAAAAATCCACAATTCACCTGTCTCTGCTTTCACCTTTCTTTTTCTCTCTCACCATTTTTCTATTATAAGCTTCTTCTTGTATTATCTAGATTTATTTGCCTTTTTATTTTATAAAAAAGAAAACATAGTAATTTTAAAGGTTAAAATTAT