Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_03548 LG1 48502132 48506269 PREDICTED: uncharacterized zinc finger protein At4g06634
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription by RNA polymerase II, negative regulation of abscisic acid-activated signaling pathway, response to abscisic acid, negative regulation of abscisic acid-activated signaling pathway, regulation of defense response to fungus, regulation of defense response to fungus, negative regulation of transcription, DNA-templated, response to abscisic acid, response to salt stress, negative regulation of abscisic acid-activated signaling pathway, response to water deprivation, response to water deprivation, positive regulation of transcription, DNA-templated, negative regulation of abscisic acid-activated signaling pathway, regulation of transcription, DNA-templated, negative regulation of transcription, DNA-templated, response to osmotic stress, regulation of transcription, DNA-templated, regulation of transcription by RNA polymerase II, regulation of defense response to fungus, response to light stimulus, positive regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of response to salt stress, regulation of transcription by RNA polymerase II, negative regulation of transcription, DNA-templated, response to absence of light, negative regulation of transcription, DNA-templated, regulation of response to salt stress, regulation of transcription, DNA-templated, regulation of transcription by RNA polymerase II, response to salt stress, positive regulation of transcription, DNA-templated, response to water deprivation, negative regulation of abscisic acid-activated signaling pathway, response to osmotic stress, positive regulation of transcription, DNA-templated
Cellular Component   is active in   transcription regulator complex, Ino80 complex, Ino80 complex, PcG protein complex
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   sequence-specific DNA binding, protein binding, sequence-specific DNA binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, DNA-binding transcription factor activity, RNA polymerase II-specific, RNA polymerase II cis-regulatory region sequence-specific DNA binding
SNP Position Effect Amino acid change
T/A 48502185 3_prime_UTR_variant
C/A 48502214 3_prime_UTR_variant
G/A 48502245 3_prime_UTR_variant
A/C 48502339 3_prime_UTR_variant
C/T 48502350 3_prime_UTR_variant
G/T 48502372 3_prime_UTR_variant
A/G 48502462 synonymous_variant p.Asn349Asn
T/C 48502663 synonymous_variant p.Gln282Gln
C/T 48502750 synonymous_variant p.Arg253Arg
T/C 48502882 synonymous_variant p.Lys209Lys
T/C 48502906 synonymous_variant p.Lys201Lys
A/T 48502995 intron_variant
A/G 48502998 intron_variant
T/A 48503210 missense_variant p.Lys182Ile
A/G 48503324 splice_region_variant&intron_variant
G/T 48503438 intron_variant
G/T 48503510 intron_variant
T/A 48503744 intron_variant
A/C 48503748 intron_variant
C/T 48503904 intron_variant
G/C 48503918 intron_variant
A/T 48504034 intron_variant
A/T 48504202 intron_variant
A/T 48504213 intron_variant
A/T 48504469 intron_variant
T/C 48504536 intron_variant
A/G 48504596 intron_variant
C/T 48504603 intron_variant
A/C 48504801 intron_variant
C/A 48505222 intron_variant
T/A 48505223 intron_variant
C/T 48505261 intron_variant
T/G 48505539 intron_variant
A/T 48505837 intron_variant
G/T 48505865 intron_variant
G/C 48505867 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_03548.1
MEIHYSSSYFERRPILKSKAPAVKWVKEWVPQDLVTTGGKCMLLKWVTEDTLKTLKEKTTEPTMPEPEPEPTTEVLFLCSYDGCGKTFIDAGALRKHSHIHGERQYVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNASVDVTKYTTPPSEKQTKTAKSSGGAYGSASSDRPYACPYDGCEKAYIHEYKLRLHLKREHPGMMPDENAEHAQANNVDNEMDEASDQDAYIAKRSNGKIQKQSRPKPSLKLPPSKIAKRKVSTPTLTVNKNSWPVKDEPFDEEDSEETEEDRDNVEDGWRYTGGNNEDDDEETEYED*


CDS Sequence:
>Vu_03548.1
ATGGAGATTCACTACAGTAGCAGCTACTTCGAAAGACGTCCCATTCTCAAGTCCAAGGCTCCCGCAGTTAAATGGGTTAAAGAATGGGTTCCCCAAGATCTTGTAACAACTGGAGGAAAATGCATGCTCTTAAAATGGGTAACAGAGGATACCTTGAAGACCTTAAAAGAAAAGACAACAGAGCCAACAATGCCTGAGCCAGAACCAGAGCCAACTACTGAAGTACTTTTTCTTTGTAGCTATGATGGATGTGGAAAGACATTCATAGATGCTGGTGCATTGAGGAAGCATTCTCACATCCATGGAGAGAGGCAATATGTCTGTCACTACGAGGGGTGTGGAAAGAAATTTCTGGATAGCTCAAAATTGAAAAGACATTTTCTCATTCATACAGGGGAGAGGGATTTTGTGTGTCCTCATGAAGGTTGTGGTAAGGCCTTTTCCTTGGATTTCAACTTAAGGTCTCACATGAAAACACATTCCCAAGAGAACTATCATATCTGCCCGTACCCAGATTGTGGAAAGAGATATGCTCACGAATACAAACTAAAGAATCACATTGCATCCCATCATGAAAAGAATGCATCAGTGGATGTGACAAAATACACTACTCCACCTTCAGAGAAACAAACAAAAACTGCTAAATCGTCTGGAGGGGCATATGGTTCTGCATCATCCGACCGTCCCTATGCATGTCCATATGATGGGTGTGAAAAGGCATATATCCATGAATACAAGCTTAGACTTCATTTGAAGAGGGAACACCCGGGGATGATGCCCGATGAAAATGCTGAGCATGCTCAGGCTAATAATGTTGACAATGAAATGGATGAAGCAAGTGACCAAGATGCCTATATCGCGAAACGGTCAAATGGTAAAATTCAGAAACAGAGTAGGCCTAAACCAAGTCTTAAGTTGCCTCCTTCCAAAATTGCAAAACGCAAAGTGTCCACTCCCACTTTAACTGTAAATAAAAATTCTTGGCCCGTGAAAGATGAACCTTTTGATGAAGAAGATAGTGAGGAAACAGAAGAAGATCGTGACAATGTTGAAGATGGTTGGAGATATACTGGAGGAAACAATGAAGATGACGATGAAGAAACAGAATATGAAGACTGA


Promoter Sequence:
>Vu_03548::LG1:48506269-48508269(-)
CAAATATTTTAAAAAAAATATATTTTAATAAATTATTAAAATAATTTAAATAGAATTACAAAAAATATATAAAATATAATATAAATTAAATTAAATATAAATTTAAATTCAATTTTAATTAAATTTAATCTTGTAAAATATAAATTAATGTTAATTTTAATTAAATTTAACTTAATAAAATATAAATTAAATTTTTATTTTTATTTTTTGCGGGTAGCGGGTACGGATAGTATAATACCTACACCCGACCCGTTTATAAGCGGGTATTAAAATATCAGCTACCCGCGGGTTGCGAGTAGTAAATATCCGCGGGTATCAACTATCTGTCGCGAATTTTATCCGCGGATATCCGCGGGCGCGTATTTTTTTGCCATCCCTAGGTACATGAGTGAGATGTACTTTTTCTATTATGGTATTATGGTACAATGATGCTCATGATGTTGTTCATGACAGGATAATCATGATGGTGGTGTATCTATGATGATGATCATGGTACTTTAGATGCTCCAAGTTATGTCATGTTGATAGTGATGTTACTATAATGGTTTTAATAAGTAGTTAACATGAGTGCTAATGAGTGGATAGACCAAGGGTCTATGTGTGAGATGTTAGTGATGACATCAAGGGTCAGAGATCAATGATTGATGATAGAAGTTTAAGGATTGGGGATCGAGTAATTCAGTATGATTGAATTGTTTATGTTATAGGATTAAGAATCCTCTTGTTATTACTACTATGTATGCGGTGTTTGATTATGGTTGAAGGTATGTATCTTGTTGTGTGTTTGCTTGTGATTGATATAATCAGAAGACATGTATTTTGTTGTGTGTTTGATTATGATTGACATAATCAGTATATATGCATTTTGTTGTTATGATTTTTTATCGGTAGCTTACCCATACATGTTTGTGTTTATGTGTTTGTGAATGAAGTTATTGACGATGATCGTATAATGTTATACATGAGGAGATAATTGACTCGAGAGAGGATGAATAATAACAGTGGGATTAATTTAAAGTTATTTAGTTTTACAAATTAAGAGAATATATTAGGAGTATTTTTCTTCATTATTTTATTATTTGGAATAATGTAATTGAATAAGGTTTAGAATTTTTTTTAATTTTATCGACTTTTAATAACTCATGACATATTAGAAACTGGGTGTTACAATATATATTAAATTATAAAATTAATATAATAATTTACTAATGATGTATATAAACATTTTAGTTAAATATTATATTAAATAATAATAACAATAATAATATTAATACTAATAATATTAATAATAAAAATAATAAAACTACCACTAATAATATTAAAACTCATAATAATACAAATACTAATTCAAATATGAATATTAATAAAATTAATGTTAATATTAATTTATTACAAAAAGTTTTATATTAAAATATTTTAATATTAAAATAATTAAGTTTCATTATTTTTAAATTATTATTCTTCTCAAAATTTTATTTTCAGATTCTATACTACTGTCATTTATGTATACGAGAGAAAGCATATTAAAGATTGTATAAATAAAAAAATGAAAAAAATCATAGATATAGATTTAAAATGGAAAAGAAAACACAAAGCATAAAATATTTTGTCTAAGAAATAAAAAAAATAAATCTTAAAAAACAAATTAGAATCAAGATCACATTATAAAAAAAAGTTACACCTATACAAAAAAAACTAGTTTAAAACAAAACAAAATTAGTAGCACACTTAATTTAACACAATCAATACCGACATTATAATACATTATTAAAAATATTTATTATTTCTTATATTTTTATTTATAGTTTAAATATCTTTTATTTTAATATATACTTGTCTATACTTATACTTGATAACAAAAAGATATACAAACAAAAACAACCGCGCGTAAAAGTTTTATAAAATTTTAAAATATTTAAGTATCACTTTACAGATATTTTATTTATTTATATTGAATGGTGTAGAAATACAAAACCCTTGTATTTATTTTATTTTATTTT


Gene Sequence:
>Vu_03548(-)
ATGGATAAAAACAATGTCTTCTCCCTTTAAGCCTGCGATAACTCCTAGTGAAGAGGAAAAGCAAGAGAGGAACCCATTATTGAGAAAATGCGTCCCTGAAAACAGCAAACCCTAAATCGAGATAAAGGTTCGAAGAATTTGCGAAACGAAGTGAGTTTTGGCGCGGCAGTGAATCGTAGATGGAGATTCACTACAGTAGCAGCTACTTCGAAAGACGTCCCATTCTCAAGTCCAAGGCTCCCGCAGTTAAATGGGTTAAAGAATGGTATAGATGAATTTGTCGTCTCTCATGATTTCAATTTACATATTATCTTTTAAGGTTTTCAATTGTATTATTTGTGGTGTGGTAGCTATGAGTGTGTTGGGGAGATATAAGAGAGGGATTTAACTCAATTCACCAGGCTCAGTTTCTTCCTTGATTACTGTGTTTATTGAATTGATTTTGGGAAAGTGGTTTGTTTCGATGTTTGATTGCGGGTTTGATGGTTTTAGACGGAGTGGAGGAGTTTGGAGGGGAAAGAGCAGAGAGGCGATTTTTCACGTGAAATTGTTTATTCTCCTTATTTGAAAATATATTTTGAATGAGTGGGATTGTAATTGGGGGTTATCATGAGACCTTGAGACCGTTCTCGTTGTTTTTACAAATGTTTTATGATTGTCTCGGTTTAGGAATGTGAATTAAAGGAGGGAACGTGTTTAACGTTAGTTTTTCCATCTAGTGTTTAGAGGGAGAGACCAATTATAATATATTTGTCATTGGTTTGTTTCTTCCTTTTCCTACCTCTTAGGTAAAATTTATACTAATAATCTGATCATTGTGGATGCCAGGGTTCCCCAAGATCTTGTAACAACTGGAGGAAAATGCATGCTCTTAAAATGGGTAACAGGTTGGTCTTTTTTCCCTATTTAGCTAGCTTACATCTTTGTTCAATCCTGCTTCCATTTGGCTATATTTCTCTGCATCTTTGCATTTTTTTAAATGATATTACTGTTTTGTTTAGCTTCTACGTACAGTTTTGTTATGATACAAAACTTGGTGGAAAATAAGGGGAAGATTTTAAGATGATTTAACCTAATATTTTTTGTTGAGGTGAGATAATGAGTTGCTGTAGAGAGATGCAAAAACAAAGGGAAGCTGAATAGATAGAACGGGAGTGTTAGAAGTTTACCAATCGCCATTGAAGCGGGAATAACTAAATACCTATTGGATTGGAATTGAATAACAAACAAGACTGTATTAAATTGTTTTCTATAGAACCAACCACCCAAAAAAGGTTAATGAAATTGGTTAGAATATTTTTTTTCCTACTCTCACTCTAAAGCTGAAATGGATTACATCACATCTTTGATTGGGCACAAGAATCGTATCCACAACAGAACATACTGGGTGTTAGTTATAAATAAAGACATTGTGCTACACAATGAACTGTTAAATGCTCATTTGAGAGCTATTCTTTCCAGGTATCATTCATCGGGTCAATTAGGGCTTCTTCGAGTCCAGGATAGGATAGAAGACTCTTGATAAAAAGCAAATTTGTTACAAAGGATTTTATGAAGAGAAATTTATATAACCAGATCTGCAAGTTGGTGTCAAATGTGTACATTTCCCTATTGGTTAATTGCTTGCAATTTTGAACATCGAACACAATGGTTCTTATTCTTAATGGCTTTACTTTTTTATTTTCGTTTAAAAGTTTTAATATAATTTTTAATCCTTGATTCTGACTCAAAAAACAATGCAGTTATAAAACATGCAATAATATCTTATGATGTTATTTTATCATTTTTTGTACCTTACATTTCTCTCTGTTTTACTTTTCTAAGAGGATACCTTGAAGACCTTAAAAGAAAAGACAACAGAGCCAACAATGCCTGAGCCAGAACCAGAGCCAACTACTGAAGTACTTTTTCTTTGTAGCTATGATGGATGTGGAAAGACATTCATAGATGCTGGTGCATTGAGGAAGCATTCTCACATCCATGGAGAGAGGCAATATGTCTGTCACTACGAGGGGTGTGGAAAGGTAGTGATTGTGTTACTTACAGTTTAAACCCATGCACATGTATTGCCATGATTTGAAATAATTTATATTACTGCATCCTGTAGAAACAGATCCAACTTCACTTTGTTTTACCATTCTCTTGTCCGATGATTGGCCTAATAGCCTAAAAGCTTTAGTGTGAAGCATTGTGTTTAATGCTCTGGAGAAGAAAAAACTCTAATTAGCATTACTATTTTGTTTACATTGCAGAAATTTCTGGATAGCTCAAAATTGAAAAGACATTTTCTCATTCATACAGGGGAGAGGGATTTTGTGTGTCCTCATGAAGGTTGTGGTAAGGTGATGAATCGGTCCAATTAATGGTTTGTTGTTTTCTATGATGCCTTCCTTTTCCTAGTTTGTACTGCATGTTCTGTGTATTATTCCATATGGTTTTACACATTTGGATCTGTGGCATATTGCCAATTAGCCTAATGGGATGCCATCTATGGCATTGGAGTGTTTTCCTCATAGGAAATTTGAAATGACCATATATTTGTTTATAGTTGACTTTATTGCAACTAAATCATTGTTAACATTTTCATCACACTAAATATTATCTTTCCACGATTTTGAACCTTTCACCTTAACAAGATGAATCTGTCCTGATCTCTGCTGTTTATCTCTCTCGACAGACACACACATATATTAAGTATGTACGTGTATGAAAATGTAGACATTATTTCAACGTTCTCTTGAGTATAATTGCCAGTGGACCTTCTTTAAAGCTAAACTAATTTCTTCCGAGTGGATTAGATTACTTTGTATGATATCATCTTCAATTATTTTCTACTATTTCATAATTTCCAGTACTGTTTATCTTTTGCTTTGGAGTTTTGGATAATGTATTACGATTGTATGCTTTTTATCACAACATCTTAGTCACCAAATTCGTCTATCTGCTGCAGGCCTTTTCCTTGGATTTCAACTTAAGGTCTCACATGAAAACACATTCCCAAGAGAACTATCATATCTGCCCGTACCCAGATTGTGGAAAGAGATATGCTCACGAATACAAACTAAAGAATCACATTGCATCCCATCATGAAAAGGTTGGTAGATTGCTATTGTTTGACCATAGTTTATTAATATCACATGCTTCATGTTATCATGTAAAAATCTCTCGTTTTAATTCATATACGTATGGTTTTGGTGTAATTGTTTCGTTTGGTATGTTAATAGATGCCTCTAATCCGAAACTGATGGATTGCTATAGTATATGCGATTCATAATATTTTGAAACTATTAAACATTTCTTGAACAGTCTTCTAATTTGCAATTTCAACCTTATCTTACAGAATGCATCAGTGGATGTGACAAAATACACTACTCCACCTTCAGAGAAACAAACAAAAACTGCTAAATCGTCTGGAGGGGCATATGGTTCTGCATCATCCGACCGTCCCTATGCATGTCCATATGATGGGTGTGAAAAGGCATATATCCATGAATACAAGCTTAGACTTCATTTGAAGAGGGAACACCCGGGGATGATGCCCGATGAAAATGCTGAGCATGCTCAGGCTAATAATGTTGACAATGAAATGGATGAAGCAAGTGACCAAGATGCCTATATCGCGAAACGGTCAAATGGTAAAATTCAGAAACAGAGTAGGCCTAAACCAAGTCTTAAGTTGCCTCCTTCCAAAATTGCAAAACGCAAAGTGTCCACTCCCACTTTAACTGTAAATAAAAATTCTTGGCCCGTGAAAGATGAACCTTTTGATGAAGAAGATAGTGAGGAAACAGAAGAAGATCGTGACAATGTTGAAGATGGTTGGAGATATACTGGAGGAAACAATGAAGATGACGATGAAGAAACAGAATATGAAGACTGAAAATCAGTTATGGCAGCCTCTATGAAACTTGCTTCCTTAGAGAAATATATTTTCTTTTTCTTCTACAAAAAAAAAATTCAGTTGTCTCTTTTTTATTTGGCTAAGGAAATGGTGTTTTGTGAAACTGAGTTGGCTATTTACATGCATTAGGAAGGACTCCTAACTATCTCTACCCGTCGCACGGGTTGTTTTTTTAAATAATTTATATATCATAAGATTATATTTTAATTAATTTATAAAATTGTATATCAATTTTTT