Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_03692	LG1	50152965	50154191	receptor-like protein 51	Map

Annotations

category		relationship type		keyword
Biological Process		involved in		signal transduction, response to bacterium, positive regulation of defense response to bacterium, positive regulation of defense response to oomycetes, positive regulation of defense response to bacterium, positive regulation of defense response to oomycetes, positive regulation of defense response to bacterium, positive regulation of defense response to oomycetes, response to bacterium, regulation of defense response
Cellular Component		located in		plasma membrane, plasma membrane, plasma membrane, cytosol

SNP	Position	Effect	Amino acid change
C/T	50152986	missense_variant	p.Leu8Phe
A/T	50152993	missense_variant	p.Tyr10Phe
C/A	50153002	missense_variant	p.Pro13His
C/T	50153003	synonymous_variant	p.Pro13Pro
C/G,*	50153036	missense_variant	p.Asp24Glu
T/A	50153121	missense_variant	p.Ser53Thr
C/A	50153126	synonymous_variant	p.Thr54Thr
T/A	50153572	missense_variant	p.Met203Lys
C/A	50153630	synonymous_variant	p.Pro222Pro
G/A	50153659	missense_variant	p.Arg232Lys
C/T	50153713	missense_variant	p.Ser250Phe
G/T	50154122	synonymous_variant	p.Val386Val

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_03692.1

MKKTLTILLYLLPTITISLSEPLDPKQVKALQSLNIPTTEDPCSQPSLLCDTSTPFRHLTTLQLSNCTSPHLSLSFAALKSLSTLHSLLLLNCPVTSTPSPTRFPLQLSSTLRSLTSVNSLRNISAVSLSHLRNLTHLTLSNLTIKASAPYVLFSHISNLQTLTISHANLAGSLPKHIHSPNLTYIDLSSNNLRGNIPSSVTMLDNLQVLILSSNQLKGEIPSSIGDLISLRNLSLDSNSFSGSVPDSLSAIPGLVHLDLSSNQLNGTIPYFISQMSNLKHLNLANNLLRGVLPFNSTFIDRLQVFKVGGNGNLCYNRSVLPSQLKLDIAPCDKFGRPVSPPPSKRSSADDSSGDGDYDGDYDDGGGSVSHKKEHHHGPNKVVLGVAIALSSMVFIVVFLILCSKCCR*

CDS Sequence:
>Vu_03692.1

ATGAAAAAAACCCTCACCATTCTCCTCTACCTCCTTCCCACCATAACCATCTCACTTTCTGAACCCCTTGACCCAAAGCAAGTAAAGGCTCTTCAATCCCTCAACATCCCCACCACAGAAGATCCATGCTCTCAACCCTCCTTACTCTGCGACACCTCCACCCCCTTCCGCCACCTCACCACCCTACAACTCTCCAACTGCACCTCTCCCCACCTCTCTCTCTCCTTCGCCGCCCTCAAATCCCTCTCCACCCTCCACTCCCTCCTCCTCCTCAACTGCCCCGTCACCTCCACCCCCTCCCCCACTCGCTTCCCTCTCCAACTCTCCTCCACGCTCCGCTCCCTCACCTCCGTCAACAGCCTCCGCAACATCTCCGCCGTCTCCCTCTCACACCTCAGGAACCTCACCCACCTCACTCTCTCCAACCTCACCATCAAAGCATCCGCTCCCTACGTTCTCTTCTCCCACATCTCCAACCTCCAGACCCTCACCATTTCCCACGCCAACCTCGCCGGCTCTCTCCCTAAACACATCCACTCTCCCAACCTCACCTACATCGATCTTTCTTCCAACAACCTCCGCGGAAACATACCCTCCTCCGTCACCATGTTGGACAACCTCCAAGTTTTGATCCTTTCTTCTAATCAACTCAAGGGTGAGATACCCTCTTCCATTGGGGACCTCATTTCTCTGAGAAACCTCTCCTTGGATTCCAACTCCTTCTCGGGCTCTGTTCCTGATTCCTTGTCCGCCATACCCGGTTTGGTTCACTTGGATCTCAGTTCCAACCAGCTCAATGGGACCATCCCATACTTCATTTCCCAAATGAGTAACCTCAAACACTTGAACCTCGCAAACAACCTCCTTCGCGGGGTTCTGCCTTTCAACTCCACTTTCATCGACAGGTTGCAAGTGTTCAAGGTGGGTGGCAACGGGAACTTGTGTTACAACCGTTCGGTTCTGCCTTCCCAGTTGAAGCTGGACATCGCCCCTTGCGATAAGTTTGGAAGGCCGGTGTCTCCTCCACCGTCCAAGCGTTCTTCTGCAGATGATAGCAGCGGTGATGGAGACTATGATGGTGATTATGATGATGGAGGTGGCAGTGTCAGTCACAAGAAGGAACATCATCATGGACCCAACAAGGTGGTTCTTGGTGTGGCCATAGCGCTTTCTTCCATGGTCTTTATCGTTGTTTTTCTAATCCTGTGCTCCAAGTGCTGTCGCTGA

Promoter Sequence:
>Vu_03692::LG1:50150965-50152965(+)

TTAAGTCCGATGTTACGAATGATCAAGTTATTGAGTCTATCCCTAGATCTCAAATCACTTAAGTGCTCTATCTACGTTCGTTCATGTTCAAAGTTACTTTCCAGTAATCAAAGACATTCAAATAACATTATATTTTCATACAATGATAATAAATTCAAGAAAGAGCATATGAACGAACAACGATATATTGAACAGGAAAATTGCATCACAGTGAGTTCATTACATCCAATCCCAACGAAAGAGAAATTTAACTACTCCTAGTCATCTAAAACGTACACATTTGAAGCAATCCCTTGCAACAATGGTGTCTTGATGCCTTGAAGTAGTCTCCGGAAGTTCCTGAGATGTTTTCGTTTGTTTCTTCTGTCCGGAACTTCTATCCGAAGAGAATGTTTCTGTCGCTCTGTCACGTCTTTTAAAGCGAATTTTGTGTAACCGCTGCCTCTCAACTGATGTTATTCGCACAGCGCACAAGTAATGGTGCGCTATGCGAATTTCCATTTCCTAGCAGTGCGAATTTTGGCTTTCGCTTTGCGAAAATTGGCTGACAGAATCTAAATAATACACCATTCCTTGTACAATATTTTACATAACAATCTACTACCTATTACAACTTTTCAATGAGGAACAACATGAATAATTACAAGATTGAGTTCATTTATAAGTATAAAAACAACTCTTTTTCACACTTATCACCTAACATTTATGAGTTCATGAAAAACAAAGAAAAATAGTAATATGACTTTAAGAACAAAACATTCTACCGAACATGCTTCTTTAATTCTTCTATAACTCCAATTTCTTCTTCTTCTTTTTTCTTAAACTTCTATTATATAAAAATCCAGGGTAAATTTTCATTAAGAGCATTCAATATTACGAAAGTATTACTCATAATATCTACCTTTAAAATCTACTACATTCTCTCTTTTCTTTTCTTTTTCCACTAAATCAAACTTATAATGCTTATTGCTTTATCTATTTGACCTCTAACGAACTTCAATTTGAAATATATAAATAAAATATAAATAATTTACCCACCTCTTCGTCTCTAACTCCAAGATGATGTTTATTGTTGTCAACGTTGTTTTATTCAAATTCAGCGTGATAAATTTTGGTTCAAAAATATGCATTTTCTCTTGCTAATTTTCTTTTTTATCTTTTTTTTTTATAATTTTGATTCTTTGGTTTGAACCAAGTGTAATTTTAATACTTAAATGCTAGTAAATAGATTTCCACCACTACATATTCATATTATGAATGGTTTTTAAATTAAAAAGTGTATGCGCTGAGTCTCAAACCAAAGATTTATGACAAAAGTTTTTCACCACTCGTTAGACTTTGCAAGAGAAAAGATGCATAAGAAAAACGTCAGATAAAAGGATGTCTTACAGTATTGACGTAGTTTCAAAGGATATCTTAAAATAATTACCATGCTTTTTCTTTTGATGGAAGAAATAAAGAACATAAGTATAATATGAAACGTAAGAATAGGGAAACTAAATTGACAAAATAATCTAGAAATAAAGAAAGAGAAGAAAAGAGAAGAAATATAATAATGATAACGCCTAGTGCTTTCCTTTTCCCCATTGTTCTGCTCTCTGTTGTCTTACTGAAAAGTGAAAACCATCGTTGTTGACATGATAATGAAGAGTAGTTATCATATCGGAATACAATAAAAGTATTGATTAAAGGGAGAGTTATTAAAGCTGCAGCTAAGAAATAAAAATGTAATTAAGTGTGGAACCTCCAAGGAAAAGCTGGATCCCACTCTCACTGTTCTAATTCAGTCGAAAAGTTCTGACCCCAAAATAACACTCCCAGGTAAGAATGAAAATTAATAGTTAAAAATAAATGATACAATAGTGTTGTTGTATATAAGTTTAAAATTGAGTGAACTTTGGCGCTATTCTGAATCCCAATATATATATGTATGATGTGATTGTACAGAGAAGAGGACCTTCTCCTTCATTGCTTTCTGCTGGTGCATCATCGTTGAGCCA

Gene Sequence:

>Vu_03692(+)