Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_03813	LG1	51640491	51640823	PREDICTED: squamosa promoter-binding protein 1	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, regulation of vegetative phase change, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of vegetative phase change, flower development
Cellular Component	located in	nucleus, nucleus, nucleus
Molecular Function	enables	DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding

SNP	Position	Effect	Amino acid change
T/C	51640705	missense_variant	p.Asn40Ser
G/T	51640719	missense_variant	p.Asp35Glu

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_03813.1

MDASRSEGKRVLRYSEEEEDEEEEEEEEAETVFGDDGRRNKRVMRDLYGKKGSKAGGSMPPSCQVDNCDADLSEAKQYHRRHKVCEYHAKAHSVHMAGLQQRFCQQCSRS*

CDS Sequence:
>Vu_03813.1

ATGGACGCAAGCAGGTCTGAGGGAAAGAGAGTCTTGAGGTACAGCGAGGAGGAGGAAGATGAAGAAGAAGAAGAAGAGGAAGAGGCTGAGACGGTTTTTGGAGACGATGGAAGGAGGAATAAGAGAGTAATGAGAGATCTCTATGGAAAGAAAGGGTCGAAAGCTGGAGGCTCAATGCCACCTTCTTGTCAGGTGGATAACTGTGATGCTGATCTAAGTGAAGCTAAGCAGTATCACAGAAGACACAAGGTTTGTGAGTACCATGCCAAGGCTCATTCCGTACACATGGCAGGGCTGCAACAAAGGTTTTGCCAACAATGTAGCAGGTCCTGA

Promoter Sequence:
>Vu_03813::LG1:51640823-51642823(-)

AATAAGAAGTCAGTCAAGATCAATAACAAGTGAGTCAAGGTTACTGAGAAGTCAGCCAAGTTGAAAATCAAAACAACCACAGTTAAAAAATAAGTTGACCATGAAAAAAAGTGGAAACTCAATTGTTAATAAAATGAACAAGTTCAATGTAGAATAATGTATATGAAAAAGTTGGGATATAGCAAAGAATAATAAAAACATTTAAGTTTACCAGGTAGTTTCTTTAGAATAAACTTAAATGAAATAAAATTAAACAGGTTGTTTATTTATTTAGAAAATTTGTAGATTTTAAAGTCCAAAAAAGTCAAATATTTTAATGTAATAGTTATTGTCAATAATAAATAATAATTATGGGTTAATGATAGAGTTTTTGTGACTTGAAGATAAAAAAATACATATATGAATTTATAAATATTAAATATGTAGTTACCTCCATATAATAGCATCATATAATAACAAGTAGTAACACAGAAGAAATTTATAATATTACATGTGAGTATATTTTGGTAATAGGATTGTGCATAGAGAGCTAGGTCTAGCTGGTATAACATTAAATATGAGACTGAGAACAGTAAGTATAGAAAGATAATTATAAGAAACATATTTGTTGTTATATGTCACAGGTTGAACAAAATGATGATGACTAACAGCACACCTGCGCTAAATTTGATCGCAAAATATGTGGAGAGAAACTATAATAAATCCAAAAGCATCCAATAGTTGAGTTCTACTTCTAGACATTCGTACGTAACACGTGGAGTAAGCATATAGGGCCAAACCAAAGCGCTTTAAATCAATTTACACCAATCACAGTATTTCCTTACAATAATGCAAATGAAAGATATAGTCGAGAATGGAATCTATGCCCACTCTTCATCCCACCACACTTTCCTCTCGACGAGAACCAGTAAAGGACTGTCATCATTGACCCAAAAAGAAAAAAGGACTAACGTAACAGAGATAGAGAGAGAGATAAATCAACCAACACTTCTGCTGCTACCTACTAATCAGTTTATTAATTACCTTGTTTGGTAACCAGATGAGAAATATTTTGTCCACATTCAGGTAAACACTCTTTAATACATCCACACTTCAATTTTTATATACAGTGACGTTTTGGTTTGCTTTATTATTGTCTCCAACATGTTTGATTGGACCCTACAATGGAAAGGGGAGTGATATGATTATTAATATTATTATTTTCTTTCTTCATACTGTTTTTTTTTCACTGGTATTGAGAAATTTTTTCCAAATATGACAGCAAGAGCCGCCTAGAAACAATGTCACAAAGTTGGAGAGACCTCAAAAAGTTTTCCGTTAAAAAATATTAGAGTTCTCCTTTAAGGGAAAGGTGGTTTACTTCAATTTTTACTTCTCCTTAATAACTAATAATTATATCTTTAAATCAAGTTTCGAAAAGTACAAACTTTATGAGAGTAAGGAAATGTATTGCTGTCTTTTGCCCTTGATTTTCTTTCTTAGATTCTTTAGTGGTTGAGGGTGAGAGGTATAGCCACCATGGAAGGAAATTAATGAGTGTTCAATGGGGGGTGATGTGAGGACTTGGACAATTGTGAACCACTAGTCCATTTCACAAGGCACGTGTTTTTCTCTCCAAAAAGAATCAGCGTTGCTCAATGACTTAGCTATCGATATCTTTTCAAAATTCTTGTGTAAGAAAAGTCCAAGGTAAATTAAGAAGAGTGAAGAACAAGGGTTTGTTTTGTCTGTATTACTGGCTAGGTTTTCTTCAATCGTACATACTACATACCTATGGCTTATCTACTTTTTGTTTCCGACCTTTTACTGTTACCCCTAGTTGTCAACAGAAAAATGGAGACCAAAACCAAGACCCTATGTGGTCCTCACCAATTTCTCTCATATCCTATTTACCCTTCTGGTTTTTACTATTTATATCAAATGTTTATGGTCATGTCTTCCATATGTAACTCCTGAGTTTTTTTTTTCTCAGAACTTTCTTCTGGATCTCTGAGGAATTT

Gene Sequence:

>Vu_03813(-)