Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_03819 LG1 51721284 51723731 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   embryo development ending in seed dormancy, positive regulation of transcription, DNA-templated, positive regulation of auxin biosynthetic process, seed maturation, somatic embryogenesis, embryo development ending in seed dormancy, seed maturation, positive regulation of auxin biosynthetic process, seed oilbody biogenesis, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, seed oilbody biogenesis, positive regulation of auxin biosynthetic process, embryo development ending in seed dormancy, somatic embryogenesis, seed oilbody biogenesis, somatic embryogenesis, seed maturation, embryo development ending in seed dormancy, positive regulation of transcription, DNA-templated, somatic embryogenesis, seed oilbody biogenesis, seed maturation, somatic embryogenesis, embryo development ending in seed dormancy, seed oilbody biogenesis
Cellular Component   located in   nucleus
Molecular Function   enables   DNA-binding transcription factor activity, DNA-binding transcription factor activity, DNA binding, DNA-binding transcription factor activity
SNP Position Effect Amino acid change
G/A 51721371 missense_variant p.Val30Ile
A/G 51721425 missense_variant p.Ile48Val
G/T 51721605 missense_variant p.Val108Phe
T/A 51721732 missense_variant p.Leu150Gln
G/A 51721831 intron_variant
T/A 51721894 intron_variant
C/G 51722019 intron_variant
G/T 51722033 intron_variant
T/G 51722034 intron_variant
A/G 51722107 synonymous_variant p.Leu181Leu
T/C 51722172 intron_variant
C/A 51722215 intron_variant
G/C 51722258 intron_variant
A/C 51722284 intron_variant
G/T 51722290 intron_variant
T/C 51722380 intron_variant
T/G 51722428 intron_variant
T/A 51722649 intron_variant
C/T 51722769 intron_variant
A/G 51722780 intron_variant
T/C 51722807 intron_variant
G/C 51722809 intron_variant
T/C 51722881 missense_variant p.Tyr251His
T/A 51723145 intron_variant
T/C 51723182 intron_variant
T/A 51723277 intron_variant
G/A 51723287 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_03819.1
MDNFPVPFSAATTNPLIPNVSGTTSFSSNVIIPAEQNMAELTNFNFPIDKTGEIGFPNPYFGPYDQNMHFQQMNPYPLHTLPTPQPNAIYGPPNSEVQTSVGPLTSKVARDKRKKVRQKSKNVAPTAPLVPTKGTKEKPVSGRGKLTINLDRTTIVFCSPDGKKLEEVFTKQLKNSDVSVLGRIVLPKREVEAKLPPLTDKEGKDIIVKDVYSAKIWTLKYKYWSNNRSRMYVLENAGDLVNHYELRLGDYITIFTDEMKNLRKQYVWARKMRNLETPVCSSNMESSKTCETDNLNDMKQSTNEDAYLEFLTKLNPKKDVEEAKKLLTSFNGGGSSSSGAKSDMNIAQHDLSNTAGKGAPNQTTAEATPTAPTTPLDGNNMPISDEDVYGGLDNIFEIENSSWF*


CDS Sequence:
>Vu_03819.1
ATGGACAACTTTCCTGTGCCGTTTTCAGCGGCCACCACCAACCCATTAATCCCTAATGTCTCTGGCACTACCTCTTTCTCTTCGAACGTAATAATCCCAGCTGAACAAAACATGGCAGAACTAACAAATTTTAACTTCCCTATTGACAAAACTGGAGAAATTGGCTTTCCTAATCCTTATTTCGGTCCATATGATCAAAACATGCACTTCCAACAAATGAATCCATATCCTTTGCATACCCTTCCAACACCACAACCAAATGCAATTTATGGACCACCAAATTCTGAAGTTCAAACCTCTGTGGGACCATTGACTAGCAAAGTTGCTAGGGACAAAAGGAAAAAAGTAAGACAGAAGAGTAAGAATGTTGCTCCTACGGCTCCTTTGGTTCCAACCAAAGGAACAAAGGAAAAACCTGTTTCTGGACGAGGAAAACTCACTATCAACCTAGATAGAACTACCATTGTTTTTTGCAGCCCAGATGGGAAGAAGTTAGAGGAAGTTTTCACAAAGCAGTTGAAGAATAGTGACGTTAGTGTCCTAGGTCGCATTGTGCTCCCAAAGAGGGAGGTTGAGGCGAAGCTTCCACCATTGACAGACAAGGAAGGAAAGGATATCATAGTCAAGGATGTTTATTCTGCGAAGATATGGACCTTGAAATACAAGTATTGGTCTAATAACAGAAGTAGAATGTATGTTCTTGAAAATGCAGGGGATCTAGTGAACCATTATGAACTACGACTGGGAGATTATATAACCATTTTCACGGACGAAATGAAAAATCTGAGGAAGCAGTATGTGTGGGCTAGAAAAATGAGAAATCTAGAAACACCGGTGTGCTCGTCAAACATGGAAAGCTCGAAAACATGCGAGACAGACAACCTTAACGACATGAAGCAATCTACAAATGAAGATGCATATTTGGAATTTTTGACAAAGCTGAACCCTAAGAAAGACGTTGAAGAAGCTAAAAAGCTTTTGACTTCATTCAATGGTGGTGGAAGTTCTTCAAGTGGAGCAAAATCAGATATGAATATAGCACAGCATGATCTGTCGAACACTGCTGGGAAAGGGGCACCAAACCAAACAACTGCAGAAGCCACACCAACAGCACCAACAACACCCCTTGATGGCAATAACATGCCGATAAGTGATGAAGATGTCTATGGGGGCCTTGACAATATCTTCGAAATTGAGAATAGTTCATGGTTTTGA


Promoter Sequence:
>Vu_03819::LG1:51719284-51721284(+)
TTTCAAATCCAACCTGGCTTAAACCCATGGTGAGCTGGGTTGACCTGCAGGTTACAACTCATTTTGACAGCACTAACTAATGTTAGTGATCAATTTAAAGTCTAATTCATAAACTAATTATAATTTTTTATTCATAATACTGATTATTTTAGTGATCAATAATTTTTAATTTATAAATTAACATTTAAATTAGTCATTAAAGTGATTAATTGTTTTTTGTCTTTAAAATTAATTGTTATTTAGGATTTTCTTGTAGTATAAATAAATAAATGCTAAATGTAGTTTTCATCATATTTATTAAATTTAACACAAAAAGTTAAATTAATTGTTTTTATTTTCAATAATTGTTCAAATTAAATATTAAATTGTGAGTTAAATTGCATAAAAAGAATGGAAAGATAACAAGTAGGTGGGTGGAAAAAAAATGAAAGAAGGAAATTTAAATATGTTTTGGTGGAAGTGGAGTTGGAGTAAAAGGAGGGAAGACGAAGGATGAAGCATAATATAATGCATTATGTCGGAGATCTATAAAGTTTATTAGACATATAAGTTATATGATGTGATAGGAAAGAAAAAATAAAAAAAGAAAAAACAAGTATATAACTATATAAAATGAAACATGTGTATCATTGATATATATATATATAATCTTGAACTATTGTAAGATTAAGTTACACTTTGAAATATGTCTAAAAAAGTATGAGTTTATACAATTTTTTGGTCAAAGAAATAAATGATCCTCTTTTGTTTATAACTGTTGTTACAGTTAAAAGAGATGTGGTTTTATGGTGGCTTTAAATTACCATTATACTGAAATTATTAACAAAGTTAATTCTAAACTAAATGAATATCTATTATTCATTTTAAAAACATAAATAATCATGTTCAACATTTGAAAGATAATAAAAAAATGAAAAATAAGGAAAGAACAAACTATTAAAATTCAATCATTATATTTTCAAAAGTAATGATAGATGTACACTCATTATTTTCAAACACCAAACACTTGTTATCCCTTTTTTTTCCTCTTTATATATCACCTATTGTACTTGTAATTTTCTTTTTCTTGCAAATAGTTTTCAAAAGTTTTTAATTTACCCCACATGCCTTAATTTTATGTATTATAGTTCACATAGGAAATGTTTTTGAGAATTCTTTTTCATGTGTAATAAAAGCTATAATTAAAATATATATTTTTGTAGTTTACTGAATTAATGTGTATCGATTTTTTAGCTAGCTCAAATTTGTCTGTTTTTGAAGTTTCTTTCTCACTTTATGCTCTTAGAACCTCTTCTTAGTTGGCAAACAACATATGCTGAGTTGTTTCATGAAACTCCTAGCCCCACACCACACCACATCTCTAAGCCAACCATACCAAAGCCAAAACCTCAAAAATTTACCACACCATTTCCTATTTCCTACCCTCTCTTTCTAGAACTGATATTCAACTTTCTCAAGGGCACCCTACAAAACAAAGGGCGCACACTGTTTTTTTTTTTTTTTTTTCTTTTTAATTACATTTTGTCATCATATGAAAAGAAGGGTATTTTATAGAGAATTTGTAGCTTTGCAGGTGATGAGAACTTTATGATACGATAACGTTCGCTTGAATTGCAATGGTGCTCTAGAACAATTTTCCAATCTTGTTTTCTTCTGCTGCATCTCTCTCGGCACATCCACTTTTTGAGTTTGAATTGCTTGCTACGTACATTTCGCTAAATTTACTACAGGGATTGGCGTTCAAATGCCACAACGTTTCATCCACCTGTCACCTTTTTCACCCGATTGGGCAAATTTCACTTTCCTCTCTTGTTACCATGTGGTTCATTTTTTCTTCATTCACTGCCATCATCTGTTTCTTTTTCTTATGCTTTTTCCACACTCTTTTGTGTTTCCTTCACTGGCTTTCGTATATAAAAGCCATACACACCCTCACTCTCATATCACTCAACACAGAAAGCACAACAAAAGCCTCAAATTGAGCCTCTTTGTTTCAACAA


Gene Sequence:
>Vu_03819(+)
ATGGACAACTTTCCTGTGCCGTTTTCAGCGGCCACCACCAACCCATTAATCCCTAATGTCTCTGGCACTACCTCTTTCTCTTCGAACGTAATAATCCCAGCTGAACAAAACATGGCAGAACTAACAAATTTTAACTTCCCTATTGACAAAACTGGAGAAATTGGCTTTCCTAATCCTTATTTCGGTCCATATGATCAAAACATGCACTTCCAACAAATGAATCCATATCCTTTGCATACCCTTCCAACACCACAACCAAATGCAATTTATGGACCACCAAATTCTGAAGTTCAAACCTCTGTGGGACCATTGACTAGCAAAGTTGCTAGGGACAAAAGGAAAAAAGTAAGACAGAAGAGTAAGAATGTTGCTCCTACGGCTCCTTTGGTTCCAACCAAAGGAACAAAGGAAAAACCTGTTTCTGGACGAGGAAAACTCACTATCAACCTAGATAGAACTACCATTGTTTTTTGCAGCCCAGATGGGAAGGTGATTGGTTTTCTTCATTGATTTCAACGTTTTCTCAAATTATCATTCAATACATTAAGTCTAGCATTTTTAAGAGTTTACCTCACAAAGAAAATGAAGAGATGATGAATCATCTTAATTTTTTTATTTATTTTGGAAACAATTATCAAAGTGTAGTAAGTTTAAAGCAGAAAATTTATTATTAAACATGCAGTTATTTAAAACAAACATTCTTCATGTGGGGTTTTCTCTTTTCGGTATTTCATCCATACTTTTTTTTTGTTATTTCCATCTGAATGCAGAAGTTAGAGGAAGTTTTCACAAAGCAGTTGAAGAATAGTGACGTTAGTGTCCTAGGTCGCATTGTGCTCCCAAAGGTAAGATTTTATATTTTCTCTATGATTTTGGTTTTCTTTCTCTTTATGTTTATTCTAAGAAGGATGAAACATTGACGTAAAGAAACCTGATCTATGCTCCAAGTTGCCTAATATAACTATTTGTTTGCAGCACAAGAATAAAGGAAAACAAAAGAAGCAATGTTTATCTAATTAGTTTCAATCATAAATGTATTTGTGCTGCTAATTTGTAAACAAAAATCTCAACATTCTTGAATTGAAAATTCTCTAATTTTTTTTATCAATTTTTATATATTCTTCATAAAGTATGAGGAAAACTTTTAGGAAAATATAATTTTATTCTTCATTTACATGATAGCAATGCCTTCAACTTTTCTGATTATAAAATATACATATGTTAAATAGAGGGAGGTTGAGGCGAAGCTTCCACCATTGACAGACAAGGAAGGAAAGGATATCATAGTCAAGGATGTTTATTCTGCGAAGATATGGACCTTGAAATACAAGTAAATATCTTTTGCAATTTATTATTGGATATCTTTTTCGTTTTCAAAGTTATTAAATATAGTTCGTTGATTAAGCAGGTATTGGTCTAATAACAGAAGTAGAATGTATGTTCTTGAAAATGCAGGTAAAATTTCCTTTCTTTATTTCTTTCTAACTTCTGCAATAATCACAGTAGTCTTGATTTTGGCATCATAGAAAATAATTACTTGTCAATCCAATGTAACAGGGGATCTAGTGAACCATTATGAACTACGACTGGGAGATTATATAACCATTTTCACGGACGAAATGAAAAATCTGGTTAGTTTAGAATCCTTTACACGTTATTTAGTGAACAATTATTGTTTGCCATATATGCTGATGAAATTTTCAACTAAAACTACATGTTATTTTAAGGTAGAATAAAAGAAAAACCAATTAAGGGACAAAGGTGGTATCTTTGCACACTTCTTTTCAGCCCTTTTCGATTGCATGATTCTTTGATTATTGAATTGGGACTAAGGAAATATGTGCCCATATGTTCTAACCGTTGGGTTGTAATATCTGCACTTTATAACTTTTTCTTCTTTTAACCAAAATTCTAAACTTGTTTCTACACAAATAAAGTAAAAATAGGGCATGGGTGACAAGTAATTTGCAGATTTGTACAATCTTTATTTATCTGTCTCATATGAACCATTTTTTTGAGAGGAAGCAGTATGTGTGGGCTAGAAAAATGAGAAATCTAGAAACACCGGTGTGCTCGTCAAACATGGAAAGCTCGAAAACATGCGAGACAGACAACCTTAACGACATGAAGCAATCTACAAATGAAGATGCATATTTGGAATTTTTGACAAAGCTGAACCCTAAGAAAGACGTTGAAGAAGCTAAAAAGCTTTTGACTTCATTCAATGGTGGTGGAAGTTCTTCAAGTGGAGCAAAATCAGATATGAATATAGCACAGCATGATCTGTCGAACACTGCTGGGAAAGGGGCACCAAACCAAACAACTGCAGAAGCCACACCAACAGCACCAACAACACCCCTTGATGGCAATAACATGCCGATAAGTGATGAAGATGTCTATGGGGGCCTTGACAATATCTTCGAAATTGAGAATAGTTCATGGTTTTGA