Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_03828 LG1 51843821 51844662 PREDICTED: uncharacterized protein LOC108341326
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription by RNA polymerase II, defense response to fungus, regulation of transcription by RNA polymerase II, defense response to fungus, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription, DNA-templated, defense response to fungus
Cellular Component   is active in   RNA polymerase II transcription regulator complex
Cellular Component   located in   nucleus
Molecular Function   enables   RNA polymerase II transcription regulatory region sequence-specific DNA binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, protein binding, DNA-binding transcription factor activity, RNA polymerase II-specific, protein dimerization activity, protein binding, RNA polymerase II transcription regulatory region sequence-specific DNA binding
SNP Position Effect Amino acid change
C/G 51843881 synonymous_variant p.Val132Val
A/G 51843950 intron_variant
C/T 51843952 intron_variant
G/C 51844124 intron_variant
T/C 51844162 intron_variant
A/T 51844235 synonymous_variant p.Val115Val
C/A 51844387 stop_gained p.Glu65*
G/C 51844472 missense_variant p.Asn36Lys
C/T 51844573 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_03828.1
MKDLFSKLNSVLPHQSSREGISRPDQIGEAIDYIKNLQIKLEKMKEKKSNLTDIVRSRTASMNMELKSPQFKIQQMGSVLEVVLVTGLDFHFIFNETIRVLQEEGSDIVNASYTVVENAVLHKIHCQVEESVNGASRISEKLKNLCQWSVA*


CDS Sequence:
>Vu_03828.1
ATGAAGGATCTTTTCTCCAAGCTCAACTCAGTTCTGCCTCATCAAAGTTCAAGGGAAGGAATTTCGCGTCCAGATCAGATAGGTGAAGCCATAGACTACATAAAGAACTTACAGATTAAGTTGGAGAAGATGAAGGAGAAAAAAAGCAACTTAACTGACATTGTAAGGTCAAGAACTGCTAGCATGAATATGGAACTGAAATCTCCACAATTTAAGATCCAACAAATGGGTTCAGTCTTGGAGGTTGTTCTAGTAACTGGGTTGGATTTTCATTTCATTTTCAATGAGACCATTCGTGTTCTTCAAGAAGAAGGATCTGATATAGTTAATGCCAGTTATACTGTTGTTGAAAATGCAGTTCTCCATAAAATACACTGTCAGGTAGAAGAATCTGTGAATGGAGCTTCGAGGATATCGGAGAAACTGAAGAATTTATGTCAATGGTCGGTAGCATGA


Promoter Sequence:
>Vu_03828::LG1:51844662-51846662(-)
TGGGCCCAACACCAATTACATAGTGTCCAACACTAACCTTTGGTGTAACACCCTTTTCATGAGTCTTACATTTGGCGCCTAGCGAGCCCAAGACGTGCTCAGTGAGAGCACCCTATGAGCTCCTAGGATTTAAAATCAAAGATTCACGCCCAATGACACCAAGTCAAGGAGCTTTTTGACTTTAGTGTCACCCAACAACAAACTTGTTTGCCTAACGACAACCAAGCCAGAGACCCATTATCTAAGTCACGCTCAACAACATGATAGTGACTTTGATAGTGGCACCCGACGATGTAGGAGAGTTCTAAACTCCCTCTTTGAACTCTTATTGTGTAATATGACACTTCAGGAGCTATTCCTTACTTAACAAACTTCATAGCATTTTAAAAATTCAATTTCTTTGCTCAAAGAGTGCTAAATTAGTTCAATTAAAAAATCTCACAAAGGAATTCTTAACAACAGAAAAAAAACTAAGATTTTACAAGCATAGCATTCATTCTCTAATACCAATTGAATCAAACTTATTCACTTTTAGAAAACAAATTACTCCAACAAGTCATATATTTATCACAATGAGATCAATTCAAACCATTTCACCACCACAATTTAGTTCATAATATTTATCAATATTGACTAGAAGGTTGTAACATATGTTAATCAAGAAATAGTTTCAATATTTTTAATAAAAAAATACTAGTTAACATCAATTAAAAAATAATCCTGTAAAAGAGAAAATCGTCAATTTAAAAATAATTTTAACCGATATTAACAAAAACTAACTTTACTTGAAATTGATCGAGAAATAACTAAATATATCTCTAATTGAAGTCAAGAAAAGAAAATTTATGTGTGATATCGATCATCTAAAAAATACTTATATTCTTAAACAAAATCCTAACAAACACTTTGTACATTAAAAAGAAAAAATCTTATGAAGAATTTCAATAGAAAAAAAAAACCTTGTCAAAATCAATTGCAATAACAATGTCAAGTTGTTAATGTCATACCTTAACCTTGGATCACAAACAAGTCATTGATATCTTTATTGAAATGAACCAATAATGCATCTCTCAAATCAAGAATAGTATAAATAAATGAAATAAATATTAAAAAGAAAAGAATAAAAAAAATAATTATGATATTATATAGTAAATTTTTTATTATTATTTTGCAAAATTACAATTTCTTTTCATGTCCAAATCACATATTTTATTATAAAACATTTCAAATTTTAAATTATATGTAATATCTAATTGTATGTCAAAATTTCCCACTAATGTGTTTAACCCATTTAAAATCATACTTACATTAAAGTTGTGTATAGCTCATATTTAAAAATCTAAGTCTAATTGAACTTTTGTGTTTAGGTTCGTTTGGGACTTGAAGATGTCAAATTAAAATAATTCACAAATAGCTCACAAAAAGTTGAAGTCCTTTACACCTATAAAACACATGAAATATAATTCTTAATTAATATATCATGTTCTTTACTTTTTAAGTATATATAGGTTATAATTAAGCAATTTCATTGTTCATAATGATTAAACAATGAAATCTTAGATGTATAAACCTATAATATATGAACTATATAAAAATGGTAAATAAGTTATACATATATACAAGCTGGATTTTGATTAAAGCTTTTACATTGTTAGAGTTAAACTGCGAGAGTGTTGGATTATAAATATTATAAATATTATAAATATAGAAGTCCAAATGAAAAATACATTCAAACAGTCAAAAAGACAATCTGTGAAGCTTGAAACTAATCCGATAAAATGGTGTCCCCACCACATCTCATATCCCAGAACTTTAACAGTAGGATTTAATCATTGTAATTTGCTTTTCTAAAAGTCACTAGAAACTCCAAATACTTTGCAACCCTTATCAGGTATGTGTTTTAGCTCTATGAGTGGTTGATCCATTGCATCCTTATGGAGAACAACCCTAGTTCATCAACAAGTGATAGAAAATTGGTTGAGAGGAATAGAAGAAATCAA


Gene Sequence:
>Vu_03828(-)
ATGAAGGATCTTTTCTCCAAGCTCAACTCAGTTCTGCCTCATCAAAGTTCAAGGGTATGACCCTCTTTTTTCTCTGCATAAATCTCTTCGTTATTCATATGCTCTCAAGCGTCTCAATTTCATTTGAATCTTTGCAGGAAGGAATTTCGCGTCCAGATCAGATAGGTGAAGCCATAGACTACATAAAGAACTTACAGATTAAGTTGGAGAAGATGAAGGAGAAAAAAAGCAACTTAACTGACATTGTAAGGTCAAGAACTGCTAGCATGAATATGGAACTGAAATCTCCACAATTTAAGATCCAACAAATGGGTTCAGTCTTGGAGGTTGTTCTAGTAACTGGGTTGGATTTTCATTTCATTTTCAATGAGACCATTCGTGTTCTTCAAGAAGAAGGATCTGATATAGTTAATGCCAGTTATACTGTTGTTGAAAATGCAGTTCTCCATAAAATACACTGTCAGGTGAGCTTTGAATTCTCCATAACCCCTCTGCCTATCAATCGATTAACTCGTGTGTAAAGAAGTATAATTTCACACTGACTAAGAATATTAGTTAATTTACTTAATTCGCTTCATTTTATATATATAAAAAAAAGTTGTATTTTCTAAACTATCATTAGTCACATTCAAGATTGAACTCACATTTAAATTAATTAACTTTAAGAGTATTTCTGAAAGAATATTAACATTTAGAGTTAGCTAAAATTTGCTTATATTTCAATCCATCAAAATTATACTACAATGCAACTTGTTTGGATTTTGCAGGTAGAAGAATCTGTGAATGGAGCTTCGAGGATATCGGAGAAACTGAAGAATTTATGTCAATGGTCGGTAGCATGA