Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_03949 LG1 53630848 53635332 PREDICTED: calcium/calmodulin-regulated receptor-like kinase 1 isoform X2
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   response to cold, response to cold, cold acclimation, protein phosphorylation, protein phosphorylation, cold acclimation, protein phosphorylation, response to cold, cold acclimation, cold acclimation, response to cold, cold acclimation, cold acclimation
Cellular Component   is active in   plasma membrane
Cellular Component   located in   endosome membrane, endosome membrane, plasma membrane, plasma membrane
Molecular Function   enables   protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity, calmodulin binding, protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity, transmembrane receptor protein tyrosine kinase activity, transmembrane receptor protein tyrosine kinase activity, transmembrane receptor protein tyrosine kinase activity, protein binding, transmembrane receptor protein tyrosine kinase activity
SNP Position Effect Amino acid change
A/T 53631057 synonymous_variant p.Ser70Ser
T/G 53631319 intron_variant
A/G 53631323 intron_variant
A/T 53631337 intron_variant
T/G 53631598 intron_variant
A/T 53631682 intron_variant
A/T 53631683 intron_variant
G/T 53631745 intron_variant
T/A 53631772 intron_variant
C/T 53632233 intron_variant
T/A 53632328 intron_variant
G/A 53632470 missense_variant p.Gly133Glu
C/T 53632885 intron_variant
G/A 53632893 intron_variant
T/C 53632977 intron_variant
A/G 53632986 intron_variant
T/A 53633491 synonymous_variant p.Leu180Leu
C/T 53633492 missense_variant p.Leu181Phe
G/A 53633921 intron_variant
A/G 53633930 intron_variant
T/A 53634068 intron_variant
C/T 53634438 intron_variant
C/G 53634457 intron_variant
G/C 53635087 missense_variant p.Asp343His

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_03949.1
MNRPTFIFIIGICIGFVVGIGLTLSIVHCLVRRRKKPAEVDKSISHRAVTIPVNVKGYGSNSTSSEGEESPRTSEWSNMTLWLENLRRSSAMSACGIPKYSYKDIQRDTSNFTTIIGNGAFGPVYKAQMATGGTVAVKVLGTNSRQGEQEFLTEVLLLGRLHHRNLVDLVGYVADKGKHMLLYTYMSNGSLASHLYDFGKGREPMNWDLRLGIALDVARGLEYLHCGASPPVVHRDIKSCNILLDQFMKAKVTDFGLSRPEMIIPRTSNIRGTFGYLDPEYLSTRTFTKKSDVYSFGVLLFELITGRNPQLGLMEYVKLAAMEGGGKVGWEEIVDGQLNGKYDVDNLNDMASLAFICVSEVSQSRPTMCEIVQALSQLCKRNGKNLGRTSSAAALKDVCIEVDQIETKDFTSTASTDILGRLHSR*


CDS Sequence:
>Vu_03949.1
ATGAACAGACCTACCTTCATTTTCATAATAGGAATTTGTATAGGCTTTGTGGTTGGGATTGGTTTGACATTATCCATAGTACACTGCCTCGTAAGGAGAAGGAAGAAGCCCGCAGAGGTTGATAAGAGCATTTCTCACAGAGCAGTGACCATTCCTGTTAATGTCAAAGGGTATGGTTCTAACTCAACATCATCAGAGGGTGAGGAGTCACCTAGAACATCTGAGTGGAGTAACATGACTTTATGGTTGGAAAATCTTAGGAGAAGCAGTGCAATGTCGGCATGCGGAATTCCCAAGTATTCTTACAAAGATATACAAAGGGATACTTCTAATTTCACCACCATCATTGGCAACGGAGCCTTTGGTCCTGTTTATAAAGCGCAGATGGCTACAGGTGGGACAGTTGCAGTTAAAGTCTTAGGTACTAATTCAAGACAAGGAGAGCAGGAATTTTTAACTGAGGTTTTATTACTTGGAAGATTACATCACAGAAACCTTGTGGATTTGGTGGGATATGTGGCAGACAAAGGAAAACATATGCTTCTTTACACTTACATGAGCAATGGCAGCCTTGCTTCCCATTTGTATGATTTCGGAAAAGGTCGTGAGCCAATGAATTGGGATTTGAGGCTTGGTATAGCACTAGATGTTGCAAGGGGACTGGAATATCTACATTGTGGGGCTTCTCCACCTGTTGTGCACCGTGACATCAAATCTTGCAACATACTGTTGGATCAGTTTATGAAGGCCAAGGTCACTGACTTTGGGCTTTCCAGACCTGAGATGATCATACCTCGCACATCAAATATCCGTGGAACTTTCGGATATCTTGATCCTGAGTATTTGTCTACAAGAACCTTCACTAAGAAAAGTGATGTTTATAGCTTTGGTGTGCTACTGTTTGAGCTCATAACTGGCAGGAATCCGCAGCTTGGGCTCATGGAATATGTAAAACTAGCAGCCATGGAAGGTGGGGGTAAGGTTGGATGGGAAGAAATTGTGGACGGGCAATTAAATGGAAAATATGATGTGGATAATCTTAACGACATGGCTTCACTTGCATTCATATGTGTTAGTGAAGTCTCCCAAAGCCGACCAACGATGTGTGAAATTGTTCAAGCATTATCTCAGCTTTGTAAGAGGAATGGTAAAAATCTTGGCCGAACATCATCTGCTGCTGCATTAAAGGATGTGTGTATTGAAGTGGACCAGATTGAAACTAAGGACTTTACATCAACTGCGAGTACAGATATATTGGGAAGATTGCATAGCCGATGA


Promoter Sequence:
>Vu_03949::LG1:53628848-53630848(+)
CTTTTATTTAAAATATTATATTGATTTAAATTTAAACGAAAATAAAACATTAAATGTTTACAATATAAAAATGAAGAATTTTATTAAAAGGTTGAATGTTTTAATTTATTATTCTGAATTTTGAATCTGTGTTCATGGTCTGATAACCTAATGACATTTAAGAAATATTAGGAAAAATAACAAAATCTTCTTATAATTAATGTATATATTTTGTTTACAATTTTCTAATTTTTATATTTTAAAACTTTAATTTTCATAAACTTTTTGTTTAACATTTAGTAGTTTTAATAAATAAGGAATGTGATGATACTCTATTTAAAATAAGATACTTTATTTAAAGTAATAAAAAAAAGGGTGATCTGATATGATATTTGTACGGGTCTTTCAATTATAGAAACCTTACTTTCCACTAAACTTCATTTAAGAAGACATAGGAGATGAAAGAAGATTATTATAATTAATTAATTCAATTTTTTACTTTAAAAAAACTTTTTAAATTTTTACGTTTCAAAACTTTAATTTTTGAAAGTTTTTTATTTAAAATAAAAAAAATATATTATTTTTAAATAAAATAAAAAACGTATTTCATCATATTAAACATATAAGATACATATGTGTCGCTTATTATAAAAAAGAATATTTTTTGATACAGATAGGAAAAAAAACAAGTATATATTTAAAATTAAAAGAATATAATCTTTTAAGAAAAGTGTAACTTTTTACTTACCAAAAAAAAAAAAATGGAATTATGGATCTGTCTTTTCATGTTTTCTTTTGGCTCCTTAACACAGCGTACTTGATGCCCTCTCCCATGCTTAAAATCTGCATTTTTCTCATCATTGCACAATTTCCATTCTTCTCTCTCACGGTTTTCGGAATTTCACTTTCACTTACATTCATGACCTTGCTTCTTCTTTACTCTACTTGCTACTGTTGAAGGTCTTCCTCACTCTGTAGCTCTACCACTATCTTTGCCCTCTGTCTTTTTATTCACATGCACAACAATATTCTCTTCATCCCTCTGTAAGAAAACCCTCATTTTCTTTCACTATGAAAAGATTTACATGTTCATCCATACTTGCATTTTCATTTTCTTATACTTTATTTTATTGTAATTTTTTATTTTTAGAGATTTAGATGTGTATACTTTTGTCTTTGTTTTGTTTACTCCTATTGGATGAGTCACGTGTAAGACTGACTAATGGTTGTTTTATATTCTTTTGAGCGTAAGACTGACTGATAGTTGTGTTATATTCTTTTGAGCTCAACTTGCTTTTAGTAAGTTTATGCCATTTTTTATTCTTATGTAATGAGATTGTGATTCACTGATTGTTCATTTCACCAGTGTGTGGTGATTGCTTAGGCTTTTAAATTTTAAGCAAGTTGAGTGGAATGAATGATGACACGAGTCATTCATTTACTGCAAGCTTGAGGTTTTTGAAATTATCCCTAGGGAAAGTCTAAAGCGTTGTGGGGTGTCTCTCTCAGCTTCCTCTTTCTTAAAGTGAATTTATCATTTGCAGTATCTTGTGTGATTTAAAGCAGTCGAGGAAGTAGGAAATGGGAAATATGTTGATTTGATTTCAAATGAAATAAAAATAAAAAGTCTCTTTTTGTGATTTACCGGCAGAGAAATAAGAAATGTCTTAATCTACTATGGGGATTGTGCTTTCCTAGCCATATTTCATATGGTGAAAACTTACAAAGAAAAGCGGCTTATGCACGAGAACCTGTTCTTGGTAATCAGTCGTGCACAGTTTTTCTAAACTTTAAATAAATGAATCTGTTCAGCTTGAAATAACTATTCTAGAAATGCTACTCACAGAGCTGATTATGTAAGCAATACCTGTTGATACAGAATTATGTATATGTTGGTTTTCCTTATGTTATCTAATGACAGATATGATAGTTGTTGGCTCTCAACAGTTTTGTATTTGTGATTTTCAGGTACAAGGGGCAGACACTGAAGTAGAAATAATATATTCTCAGTTTAAATGAGA


Gene Sequence:
>Vu_03949(+)
ATGAACAGACCTACCTTCATTTTCATAATAGGAATTTGTATAGGCTTTGTGGTTGGGATTGGTTTGACATTATCCATAGTACACTGCCTCGTAAGGAGAAGGAAGAAGCCCGCAGAGGTTGATAAGAGCATTTCTCACAGAGCAGTGACCATTCCTGTTAATGTCAAAGGGTATGGTTCTAACTCAACATCATCAGAGGGTGAGGAGTCACCTAGAACATCTGAGTGGAGTAACATGACTTTATGGTTGGAAAATCTTAGGAGAAGCAGTGCAATGTCGGCATGCGGAATTCCCAAGTATTCTTACAAGTACGATAATCTTTATATTGTTTCCTACTTTGATCTCTTAGCTTTTTAAACCCTACTAATCATTAATTATCTTGAGAGGAGATGTTTGTGCAAAAATAATATTTCTTGTGGATATGTGTCCTTCTGCTTTCACTTTTGAAAGCAAATACGTCCAACAATTGTGTGTGATAACTCACAAATGAGTAATATCTGGCAAACCAATGTGAGGGGAAAAAAAATAAAAATGTCGGGTTGAATGAAGGTTTTAAGCTGCAGCTATATTGTCATTGAAATCTTTAATATGGCAGAGAATTGTTGGTAACTACAGTTTATACTTCATGTTGGGAAAAACCAAAAACAATATAATGTGGAAATTCCAAATACAAAGAAAAAACCGCGGCCATTGTCTACAACTCTCAATCCTTTGACCCCAAGTATACTCACTCTCCAAAGCAAAAAAGTTTTAACTACAACTCACAACACTCTACTACAAAAGTATAAGAAAAGCCAAAAAAGTAGCTCAAAGTGTCTTAGACTTGAGATGAGAAACAACTTAGACTTAGAGTCCATTATATAGTCACCAACACCCACTCCTTTTCTTATTCTAGGAGATATGAGAGTTTACAAGATGCATATTTTCATCATACTTAACCGTTTGCAACTGCAGTCTCAAAAACCCTCAGACATTGTGGTAGGACGAGTTGGGGAATCTTCTTTTAAAACCATTAGCATAATAAAATTGTCTAGATATTATAAACAGCAAGAATGCAATGAAATTTCTCTCACAGAAGAGAGAAAGTATAACCTGAAATAGAAGAAGATTAAAATATGCAACATTACTGATAAGGAAATATATAATTCAGCTTGGATTGTATTCGATTAGGAATAAAGTTGAATTATAATACATAAGTGGAGTGCAATCCTTATCTTATAAGTTGATTTTGTTAAGTTGAAATAGATATAAACCTACTTACTAAGATAGTATCAAAACCTATCTTAGTCAAGTTCTTTGGGACTATTATGCTATTGTTATTGAGTTCTTGTGAGACCACCTATAAATATCTAATTCCATATTCAGGATGTTGGTTCCACGGTGTTCTGTGGGGTGTTTGTATAACATATTTCTTAGTAGCTTAGTAACTGAAGTAGGTAATCATCTCTCTATTTTCCTTTTAGTTGTTGCCTTTGTGCTGTGTATTTCTTCATGTTTTAAGTTTTTTTTTATCCTTGTGACACCTTTTGCAGAGATATACAAAGGGATACTTCTAATTTCACCACCATCATTGGCAACGGAGCCTTTGGTCCTGTTTATAAAGCGCAGATGGCTACAGGTGGGACAGTTGCAGTTAAAGTCTTAGGTACTAATTCAAGACAAGGAGAGCAGGAATTTTTAACTGAGGTAAATGGTATACTTAGCTTTCTATTGATGTGTCAGTATAAATTGCCTTTTGCTTTTGTATTGAGTGAGGAATTTTGTATTGAATTAGGCTCCCAATAGGATATTGCTTCCCAGTAGGTTTCTCTGCATTGTGAATTCTACTGAGTCTTTACCTTAAAAAATATATTGGGAAATTGCGTTACATAAAAAGTTAAGTTGGGTAAAAGACCTCACGGGTAAAAAAATCTTACATTATTAACCTTGCACTCATTATCCATATATTATATATACCGCAGAATACCACTTTACCAAACTAATTGATATTTTTAGAAAAGTAATTATAAAATGACATACATTTACATTCATTTGACACATTACACGGATAAAATAATCATAAAAAGTAAATTTTTGTATTTTTAGAAGAAAAGAAAAAGTAAAAAGTAAAAAGTAACAAAGGGTATTATTAAATGAATATAGAAAATTTGTGTGCGTCAAAATATCATTTCTCTTTCTGGAAAGTTTACTTCAATATGTGAGGAAGGATAAAGAATCTGTGCATACTACAATTTCTTAAAATTTTACAGGATTGATATCTATAACTTTCACTTAAAACTTCTCTGGATAATTTGGAAGGCATTTCTTAGGATGTAATTATACTAAATCTTCATTTTCCCCTATGTCTTGTACTAGTTCTTCTACTTTATTTTTTGGTGGCATTAACAGTTAGAGCTAACTGTCATTCAGTTACTTTACTGGTAACTACCTTTAATTTACAACAAGCTACAATCCAACTGTTCTTTACTCCTATTTTTCTTTTTCCAGACATTTTACATTTTGACTGATGATTTTGGATGGTAAGACTAAGACAGCTTAATAATCCTTCCTTTCACGTTAGCAGGTTTTATTACTTGGAAGATTACATCACAGAAACCTTGTGGATTTGGTGGGATATGTGGCAGACAAAGGAAAACATATGCTTCTTTACACTTACATGAGCAATGGCAGCCTTGCTTCCCATTTGTATGGTTAGAAAGAGATCCATTTTTTCTTGTCAATTATACTAGTAGGTGAAATTTGTTTGTACAGTCCCAAACGGAGTAGATGTTCTCAGTGTCTAATGACTTCATTATTTGTCCTCAATAAAATGTTTCTGTATTGACATATCTTGTATCAATGATATATATCAATAAACTTCTAATTCAATAATTTTTGAAACTCTGAGTTGCCTTTTGAAAAATAAAACATTTGATTATCCTCTGACTGAACTTTTATATTTACTTTGTTGGTTGTCGTCCAGTCCATGGTTATATAGTATGCATGCTTTACTGTTCATGTTGCGGTTCTTTTATTTCCTCGTTATAGCTTTAAACCACTGGTATTTTACTGACAAAATTATCACCACATATATGAGGATATCAAATTAATCTGGTTATATATTGGGCTTCTTTCCATCAACTTTGACACAGACTACCTATCATACTGCAAAAGATAATTCTAGGAAACAAAATTTCATATTTTCTTCCGGAGCTTAGAAGAATTTTTACTTGTACTCTTCTTTGTTCTCCGTTAACTTACCCTTGTGGGTTGCAGATTTCGGAAAAGGTCGTGAGCCAATGAATTGGGATTTGAGGCTTGGTATAGCACTAGATGTTGCAAGGGGACTGGAATATCTACATTGTGGGGTATATATAATACTCAAATCAACTAATTAAATCGGTCAACTTACGCATGGAGAACATGGAATGGAATAAGTTTCCTTTTGTTTTCTTCTTATTTATAATCGAACTTGTTGCAGGCTTCTCCACCTGTTGTGCACCGTGACATCAAATCTTGCAACATACTGTTGGATCAGTTTATGAAGGCCAAGGTGATCTTTGCACTTTTAGTTCCCACAAATTAAGATATTGGTGATACTTTAAAACTTTCATGGGGCATTATTAGTTTCGGTGCCATTTTTCTCTTGTTATTATTCTTCCATTTATGCATTGCATTTCATAAATTTTTCTTTTCTATATCATCAAAATGATGCTGCCATAAGCTTTCCTGAAAATGATATCTTATTTTTGTTAAGATTCTGCTGCAATTTTTCTTCTCATCATATCCCTTTACTTGCTTCTGTCCATATTGAAGCTCGAAGCCTTTCTTCTTTTATATATGTTTAGGTCACTGACTTTGGGCTTTCCAGACCTGAGATGATCATACCTCGCACATCAAATATCCGTGGAACTTTCGGATATCTTGATCCTGAGTATTTGTCTACAAGAACCTTCACTAAGAAAAGTGATGTTTATAGCTTTGGTGTGCTACTGTTTGAGCTCATAACTGGCAGGAATCCGCAGCTTGGGCTCATGGAATATGTAAAACTAGTAAGAACAGTATCTATTTGTGTGTTTCTTTTTGTGTGCTGGTTCTGTGCTGCATGCATGTGTCTTGATACATTTGAAAATATACAATTAAATACTTAAGATTGACACAGTATTTCTTGACGGTTATCATTAGGCAGCCATGGAAGGTGGGGGTAAGGTTGGATGGGAAGAAATTGTGGACGGGCAATTAAATGGAAAATATGATGTGGATAATCTTAACGACATGGCTTCACTTGCATTCATATGTGTTAGTGAAGTCTCCCAAAGCCGACCAACGATGTGTGAAATTGTTCAAGCATTATCTCAGCTTTGTAAGAGGAATGGTAAAAATCTTGGCCGAACATCATCTGCTGCTGCATTAAAGGATGTGTGTATTGAAGTGGACCAGATTGAAACTAAGGACTTTACATCAACTGCGAGTACAGATATATTGGGAAGATTGCATAGCCGATGA