Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_04085 LG1 55516966 55517808 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   protein phosphorylation, carboxylic acid metabolic process, jasmonic acid mediated signaling pathway, protein phosphorylation, defense response to other organism, carboxylic acid metabolic process, response to chitin, jasmonic acid mediated signaling pathway, cell wall organization or biogenesis, response to water deprivation, jasmonic acid mediated signaling pathway, response to water deprivation, defense response to other organism, response to abscisic acid, response to wounding, protein phosphorylation, response to abscisic acid, regulation of defense response, defense response to other organism, jasmonic acid mediated signaling pathway, response to water deprivation
Cellular Component   located in   chloroplast
SNP Position Effect Amino acid change
A/T 55516981 stop_gained p.Lys6*
G/A 55516995 synonymous_variant p.Leu10Leu
C/T 55517013 synonymous_variant p.Gly16Gly
C/T 55517015 missense_variant p.Thr17Ile
G/A 55517055 synonymous_variant p.Lys30Lys
G/C 55517090 missense_variant p.Cys42Ser
A/C 55517094 synonymous_variant p.Ser43Ser
A/G 55517118 synonymous_variant p.Lys51Lys
G/A 55517154 synonymous_variant p.Val63Val
G/A 55517192 missense_variant p.Cys76Tyr
A/G,* 55517270 missense_variant p.Asp102Gly
G/T 55517443 stop_gained p.Glu160*
G/A 55517449 missense_variant p.Ala162Thr
C/T 55517501 missense_variant p.Ser179Leu
C/A 55517503 missense_variant p.Pro180Thr
C/T 55517510 missense_variant p.Ser182Leu
C/T 55517533 missense_variant p.Pro190Ser
G/A 55517555 missense_variant p.Gly197Glu
C/A 55517587 missense_variant p.Gln208Lys
T/C 55517616 synonymous_variant p.Asp217Asp
C/T 55517636 missense_variant p.Ala224Val
G/A 55517723 missense_variant p.Arg253Gln
T/C 55517786 missense_variant p.Val274Ala
G/T 55517808 stop_lost&splice_region_variant p.Ter281Tyrext*?

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_04085.1
MAEWKKLRVLGEGSYGTVYLVLLRSIEEQKPKISLLALKTSCSYSMLREKKVFELLRGCEGIVQCYYYKCIVERGCLTYNLFMEYAPHGSLGNLIKTKLLSDKEVIVYTHMLLKGLSCMHEKGIVHCDLKPDNILLFPSWDDRTKYQLKISDFGLSKTSEEANADLGEIKFRGTPYYMSPESVRGFKETPLDIWSLGCIVIEMSTGLQKWWNIETADQLLYKLAFFNEAPKIPDELSYDCKDFLKKCLINDPRQRWTAKMLLDHPFIQKEYPMVRYNPSN*


CDS Sequence:
>Vu_04085.1
ATGGCTGAGTGGAAGAAATTGAGAGTTTTGGGAGAAGGTTCATATGGCACAGTGTATCTGGTTCTTCTACGTTCTATAGAAGAACAAAAGCCGAAAATCTCACTCTTAGCATTGAAGACAAGTTGTTCATATTCAATGTTAAGGGAGAAAAAAGTTTTTGAGTTATTACGGGGTTGCGAAGGAATCGTGCAATGTTATTATTATAAATGCATTGTTGAGAGAGGTTGTTTAACTTATAACCTCTTCATGGAGTATGCCCCTCATGGTTCTTTAGGCAATTTAATAAAGACAAAGTTATTATCCGACAAGGAAGTGATAGTCTACACTCACATGCTTCTCAAGGGACTTTCTTGCATGCATGAAAAAGGAATTGTTCATTGTGATCTTAAACCGGATAACATTCTCCTCTTTCCTTCATGGGATGATCGTACAAAATATCAACTAAAGATTTCTGATTTTGGATTGTCCAAGACTAGCGAAGAGGCAAATGCTGATTTAGGAGAGATCAAGTTCAGAGGGACACCCTATTACATGTCACCGGAATCAGTTAGAGGTTTTAAGGAAACACCTTTAGATATATGGTCTCTTGGATGTATTGTTATTGAGATGAGCACTGGACTTCAAAAATGGTGGAACATTGAAACCGCAGATCAATTATTGTACAAGCTTGCATTTTTCAATGAAGCACCAAAGATACCAGATGAACTTAGTTACGATTGCAAGGATTTTTTGAAAAAATGTTTGATCAATGATCCTCGACAAAGATGGACGGCTAAAATGCTTCTAGATCATCCTTTTATTCAAAAGGAATATCCAATGGTTAGGTATAATCCTTCAAATTAG


Promoter Sequence:
>Vu_04085::LG1:55514966-55516966(+)
TTGTCATCCGATTGATTTAATTTTAAAATAAAAGTCAATAATGTCCAAAAAAATATATTTTAATTGTATTATATTGATTTTCATTTTATAATATGAAAAAAGAGAGAGTAAAATACACATACATGCATTTAAATTACAAGTTATAAATAAATAATAGATAACAATTTTCTAGTTCATAAAAGTGTTTTTTTAAATATAGTTCATACAACTTCTAGAAACATAAATATATAGCTAATTATTGAATACTCTTTAATGCATAACAAGTTCGATTCAAATTCTATCGAATCTATTCTTAGGAGAAAATTTAAAACTTGATAAAGAAAATGGTTTTTCAATTTGATATTTGTTTAATTATTGTTTTTAGTTTACTTTTCACTGTTCATATTGCCACCCATATATTTTCACAATCTCTTTACTTTTATTTTGCTTTCGAAACATTCTCAATGATTTTTTTTAATAACAAAATATATTTTGGGATTCCTCTAACGAGTCTATAAAATTATTTTTTAAATTTATTCTTAAATATGATTGTTTTATTCGTATAAATCATATAATATATTTGAGTCAATGAAATTTTTTTTTAAATGATGTCTTAAATTGAAAAAAAAAAGATAATTTTTTATATTTAAAAATATTTAGCAATAACTAATGTATTGATAAATTATTTTTAGTTTAATGTTAGATGTACCTTTTATATGTTTTTAACATATCAATTTTTTTGGTTATGAAAAAGTTATTGAAATATGAAAATCAATTATATTTTAAAAACAATTTTTTTAATTTCTAATAATATTTATAAAAAATAAAATAGATTTAATAAATAGAATTATTTTTAAAGTCTAAATATTAAATATTAAGTATAGAAATGAATTAATAATATATCAAATGATATATACAAATACATATCTTTGTCCTATGTTAAATATAAATAAGTGGCTGAGTAAATTATAAATGTACTAGTTATAAGATGAAAAAAAAAATTACACAATATTATAAAATAAAAAGATTATAAAGTTAGATTTAATATATTTTATAAATAAATTAAATAAATAAGCTACCGATTATAATAAAAATATATGGGAGATTACTTTTTAAAAAAATATAAAAATAAATTATCAAATAGTTTTTAATTATTTGATAATCTTATCATATTTTGTTTCATAGATGATATTTTATCATTATCTAATGAAATATAATTTTAATATATAAAAATAAGATAATAGTTATTTTTACATTTTAAATCCTATTATGTGAAAGAGTCTTGTAACTGAATTAATTATATTAAAATAAATCTATATGTTTTTTAATCATGTGACTTTTTTTTATTGAGTTTCTATTTATGAGTTAGTTTAAAAGTATTTTTTTGGTTAAGGTTAGATTTAATATATTTTATAAATAAATCAAATAAATAAGCTATCGATTATAATGAAAATTATATGAAAGATTATTTTAGAAAAATATGAAAAAAATAATTATCACAAAATTTTTAATTATTTGATAATCTTATCATATTTTGTTTTATCTATGATATTTTACCATTATCTAATGAAATATAATTTTAATCTATAAAACTAAGTTAATAGTTATTTTTACAATTAAAATATCCATTATAATAATATATTTTAAATCATATTTCGTGAAAGAATCTTGTAACTGAATTAGTTATATTAAAATAAATCTATATTATTCAATTTATCTACGTTATAGTTTTAACAATACTATTTTTTTTAATAAGATTACATTATATTATATATTTCTAATATTTAGAATATAATTATTAATTATTATTTTCTTATCTGATCTTTAATTTGTTTTTCTTATTAACTATCTTATCTGTAATCTATTTCGAGATAATAATTAATTTTTATTAAACATATCTTTTATCTTTTTATATTAACATTCATTTTTTCAAAATCATCAATTACTTTATAAATATATATACATAGAAATAACTTTTGTATTTCAATACATAACTTCAAGCATAATAAAATTTCAAGACA


Gene Sequence:
>Vu_04085(+)
ATGGCTGAGTGGAAGAAATTGAGAGTTTTGGGAGAAGGTTCATATGGCACAGTGTATCTGGTTCTTCTACGTTCTATAGAAGAACAAAAGCCGAAAATCTCACTCTTAGCATTGAAGACAAGTTGTTCATATTCAATGTTAAGGGAGAAAAAAGTTTTTGAGTTATTACGGGGTTGCGAAGGAATCGTGCAATGTTATTATTATAAATGCATTGTTGAGAGAGGTTGTTTAACTTATAACCTCTTCATGGAGTATGCCCCTCATGGTTCTTTAGGCAATTTAATAAAGACAAAGTTATTATCCGACAAGGAAGTGATAGTCTACACTCACATGCTTCTCAAGGGACTTTCTTGCATGCATGAAAAAGGAATTGTTCATTGTGATCTTAAACCGGATAACATTCTCCTCTTTCCTTCATGGGATGATCGTACAAAATATCAACTAAAGATTTCTGATTTTGGATTGTCCAAGACTAGCGAAGAGGCAAATGCTGATTTAGGAGAGATCAAGTTCAGAGGGACACCCTATTACATGTCACCGGAATCAGTTAGAGGTTTTAAGGAAACACCTTTAGATATATGGTCTCTTGGATGTATTGTTATTGAGATGAGCACTGGACTTCAAAAATGGTGGAACATTGAAACCGCAGATCAATTATTGTACAAGCTTGCATTTTTCAATGAAGCACCAAAGATACCAGATGAACTTAGTTACGATTGCAAGGATTTTTTGAAAAAATGTTTGATCAATGATCCTCGACAAAGATGGACGGCTAAAATGCTTCTAGATCATCCTTTTATTCAAAAGGAATATCCAATGGTTAGGTATAATCCTTCAAATTAG