Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_04194	LG1	57228532	57233418	hypothetical protein	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, chemical homeostasis, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, defense response, root development, regulation of transcription, DNA-templated, root development
Cellular Component	located in	nucleus
Molecular Function	enables	transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, DNA-binding transcription factor activity, sequence-specific DNA binding

SNP	Position	Effect	Amino acid change
T/A	57228669	synonymous_variant	p.Ala46Ala
A/T	57228725	missense_variant	p.Asn65Ile
A/G	57228729	synonymous_variant	p.Thr66Thr
G/C	57228813	downstream_gene_variant
C/T	57228881	downstream_gene_variant
A/T	57229048	missense_variant	p.Met78Leu
G/T	57229055	missense_variant	p.Ser80Ile
T/C	57229365	synonymous_variant	p.Thr155Thr
A/C	57229534	missense_variant	p.Ile212Leu
C/A	57229538	missense_variant	p.Thr213Asn
A/C	57229540	missense_variant	p.Thr214Pro
C/T	57229543	missense_variant	p.His215Tyr
T/C	57229584	synonymous_variant	p.Val228Val
G/T	57230488	stop_gained	p.Gly423*
G/C	57230491	missense_variant	p.Glu424Gln
A/G	57230493	synonymous_variant	p.Glu424Glu
G/T	57230494	stop_gained	p.Glu425*
C/A	57230568	synonymous_variant	p.Ala449Ala
A/G	57230571	missense_variant	p.Ile450Met
C/T	57231150	intron_variant
T/A	57231488	intron_variant
G/A	57231592	intron_variant
A/G	57232077	intron_variant
C/A	57232103	intron_variant
G/A	57232129	intron_variant
C/T	57232137	intron_variant
G/A	57232173	intron_variant
T/C	57232174	intron_variant
A/G	57232179	intron_variant
A/G	57232188	intron_variant
A/T	57232196	intron_variant
C/G	57232207	intron_variant
C/T	57232226	intron_variant
A/G	57232381	intron_variant
C/T	57232384	intron_variant
T/C	57232391	intron_variant
G/A	57232400	intron_variant
C/T	57232408	intron_variant
C/T	57232410	intron_variant
C/G	57232412	intron_variant
C/G	57232489	intron_variant
G/A	57232508	intron_variant
C/G	57232589	intron_variant
A/G	57232594	intron_variant
G/A	57232612	intron_variant
C/T	57232619	intron_variant
A/T	57232730	intron_variant
C/T	57232839	intron_variant
C/T	57232870	intron_variant
T/C	57232902	intron_variant
T/A	57232922	intron_variant
T/C	57232923	intron_variant
C/T	57232930	intron_variant
C/T	57232938	intron_variant
T/C	57232990	intron_variant
G/A	57233048	intron_variant
T/C	57233067	intron_variant
C/T	57233157	synonymous_variant	p.Thr487Thr
A/G	57233189	missense_variant	p.Gln498Arg
G/T	57233208	synonymous_variant	p.Ala504Ala
C/G	57233294	missense_variant	p.Ser533Cys
G/A	57233302	missense_variant	p.Asp536Asn
G/T	57233305	missense_variant	p.Asp537Tyr
C/T	57233323	stop_gained	p.Gln543*
G/A	57233342	stop_gained	p.Trp549*
C/G	57233373	missense_variant	p.Cys559Trp
T/C	57233382	synonymous_variant	p.His562His

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_04194.1

MEIDLSLKIDADDGQKPQLDEQVKEYNDEQKMSQILDHNKEEVPEAAAGEIEDDASVVQTSFQDNTKTKELSVLQMEMESMKEENKVLRKVVEQTMKDYYDLQMKFSAIQENNKRKDHEISLSLQDIATTSGEGPSRILEIVSKKIQRAPSPPNTDDDSLSESELGLSLRLQPSTSQKESDVGNKEDRKDQQLASFVSVQNKLQRTHELPGITTHAISPPNRKARVSVRARCEAATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCIDDMSILITTYEGTHNHPLPVGATAMASTASAAASFMLLDSSNPISDGTSSFTQAPLPYNAFHPLNSASNFRSINPNDPSKGVVLDLTSNLSEPLRFSTGSSSNTTTDTRFSWMPNKYHGGGAISMNNNFHKPRPVDIHDRMWKGEESKQLDENVSAIASDPKFRVAVAAAITSLMNKESHNATHPIGTSFGPRSGQNGKAVRHFAGVRTEVREGVVSSRQVGWLHAEEQFVQVWKQRGVCGGGTCEGSGHFEGASSGDDRNERVQRRCLNWVCREDAEKVCGLHECEESSESGCS*

CDS Sequence:
>Vu_04194.1

Promoter Sequence:
>Vu_04194::LG1:57226532-57228532(+)

GATGAATCAATTGGGTTTCTTGATAAGCTTCGCTTCTTGAGTGCTAGATTATGCGGCGGCCTGAGCGCAAACGCGATTTGCTCACATCCATTACTCTTCTACTTAAACTCTTCTATTCCCTCAAACAATCATCATATTTTTCTTCTACCCCTCTTTCACTTTCTCCCAAATCAATTATCCTTCTCAAATGAGTAACCCTGGAAATAGGGAATCAAACACCCAGATCCCTAAAGACGGAAAAAAGTTTTAATTTTTTCAGGTACAATTCACTGATCATTCATGTTCAATGCCCTCTCCGGCATGGGTGGCGGTGGCCAAGTCAACTCCACCGCTTACAATAACGCTATGAGAGATGTCCTGTTCTTGTTTAGATTTTAGAAATCGTATTTTTAAAATGTTTATTTTATCAAGTTCCACGAACAAAGTTTGAGAATGCCACGTTTAAAAAACTTGACACGTCAACTTCGTACCTCATAAAAAACTTAACCCCACTAAGCCAATTTAACTGCAGATGCTCAATTGATTCAAATTAACACTTTTTAGGACTCAATTGAAAATTCTAATAAAACGAGGATTGAACCGGGAAAAACCCACGTAAATAGGTACAACTAAAAAAGTTTAACCATAATTATTGGTGTTATCGATCTACCACATTTAAAAATAAATGAGAAACAAATCCCAGTACACAACATAAAGATAATTGGCCAAGAAGAAGGGGAGAAAGTTCGTTTTCTAGTTAAAGTTCGACGAAAGAAAATAGTGTGTGGGACACGATAGCATGATGTAATAAATAAAGAGCTAGAAAAGTGTGTGTGTGTTTAAATGTCCAAGAAAATATCATAAACAACTTTGTATATAAATAGATTAATGTATAATAAATAAATCTGTTTACTTTACAGAAAGAGTTTACTGCGAAAAAATGGATTTTTTTTTTTGTTGATTATTAAAGTATAACGTGGGAGGTAGTATAGAACTAAAGTATATATATTATATACAACTAACTATAAAGTAGGAGTTGAGATGTAAGGGAAGTTAAATATGGTCTTAGAGTTGACAAAATCAAGATCTGATCCCAAGGTTTTTTTTTTTTTTTCCTTCATATGGGATTTCGTACGGGGCTCATATTCCGTGGTAATAGATGATGTAACATTAACTCAAATATTATAATTAATCAGCTGCATGTTAAGGTTTAGAATAATATATTTTTCTGTATTTTTCAACTGTATAAAAAAGCTGGAATGAATCTCGTCAAATTGTTCGCCATTAGCAGGCACATGCAGCACGAGTGCCCCCTTCAATGTTGAACAAATGGCTTATCTTTTCCAGTGTAAAAGGGCATTGGTTTTCATGCGAATCATGCCCTAACATGCACAGATAGAGATAAAAAGAGAAGCATGCAATTCATGATATAGTGCATGCCCTAGCGTGTGCCCTAGTGTTAGTAATGAAAAAAGGTTTGTATTATTAGCACGCTGGCTTCAATTAAACATGATGTTAGGCGGCTTAATTACGTGGTCTAAAAGGATAAAAATAAAGCCTATATATGTTATTTTATGCTATGTAATAATGTCAAAAACTCACCTTTTTTTCAGTGCACTGGTTGATTTGATTCTTGATCACAGAAAGGGCAATTATAAAAGGTCAATGACCCAGGATGGCAATGGTTACTTTTGTCTTTTTGGCATTGGGAGAGGGTTCACTTATCAAATATAGTAGGGTGCCCACTTGCCTGTTTTTATTAAATTTTAACATAGAAGCTTATAGAGTGATTAATTTAATTGGAGGTTCATTAAGAAGCCAACTAAAGTCAAATCATAGATGCGTCCTTGTGTGTCCAAGATATAAGAAACGTCTTCGGGACGAGGGAATTGACTTTGGTGCCTCAAAAGGGGTGTATATACTTTTTATATATAAATCATAAGAGAGGACAAAGGAGGAGATTCTTCAGAACCTCTCAACCTTGTCCTAATTCATGGGTAGAAGCCAAAACCCCACAAACA

Gene Sequence:

>Vu_04194(+)

ATGGAAATTGATCTATCTTTGAAGATAGATGCTGATGATGGACAAAAACCACAACTCGATGAGCAAGTCAAAGAGTATAACGACGAACAAAAAATGTCACAGATTCTTGATCATAACAAGGAAGAAGTCCCTGAAGCTGCAGCTGGTGAAATAGAAGATGATGCATCAGTGGTACAAACATCTTTTCAAGATAACACAAAAACAAAAGAGGTACTTATAATTATATTTTCATTATCAACAACCAGATCCAAAACCATATCCTCTTTCTTATACCTCTTCTAGCTCCTCAATTTCATTATTCTGAATGAGTAAACAACAGCTAAAAATGAATCTTTTGACTAACTATTTTCTCAGTTTTTCTTATGCATATGCCTGTGTAACTGATCTTGAAAACACAGAATTCTTTTGATAACTTTGTTTGAATAAATACCATATATGATACATATGCTAGACCTGTTCGATTAGAACGTTAAAGAGTATGGTATTTTCCTCCAGTTAAGTGTCCTACAAATGGAGATGGAGAGCATGAAAGAGGAAAACAAAGTTCTGAGGAAAGTTGTAGAACAAACAATGAAAGACTATTATGATCTGCAGATGAAATTCTCAGCTATCCAGGAAAACAATAAAAGAAAGGTAAATCCTATTATATTCATATTTTGACTTTAATCTATATTTATTTTTTCTATATATAATAATACACAGATCCCATTTTTATAGGATCATGAAATTTCTCTCTCCCTTCAAGACATTGCCACCACCAGCGGTGAAGGACCATCGAGAATTCTTGAGATCGTGAGTAAGAAAATTCAAAGGGCTCCATCTCCTCCAAACACTGATGATGACAGTTTAAGCGAGAGTGAATTGGGTTTATCACTGAGGTTGCAGCCAAGCACAAGTCAAAAAGAAAGTGACGTGGGAAACAAGGAAGACAGAAAAGATCAGCAATTGGCAAGTTTTGTGTCAGTGCAGAACAAACTACAGCGGACACATGAGTTGCCCGGTATCACTACCCATGCTATCTCCCCTCCAAACAGAAAGGCTAGGGTTTCCGTTAGAGCAAGATGTGAAGCTGCCACAGTGAGTTCAAAATCTATATATGTATTCATAATTAATGCAGTTTTCATGATACCATCATTGTCTGTATGATTGGATTCACATTGAACTAATCATCTTAATGTTGTGACAGATGAATGATGGGTGCCAATGGAGAAAATATGGACAGAAAATTGCAAAGGGAAATCCATGTCCACGAGCATATTATCGTTGCACTGTAGCCCCAGGCTGCCCCGTTAGGAAACAGGTAATTCTTTTACATGCACACTATCCCCGTGTTTGTTTTCGACATTAAAGTTTCACACTTTTCAAGAAAAAACACATTCTATGTATACCTTGTTAGGGTTAATTTAAGCACATGTTTCAATTAAGTTCAAGCCTTGTCCTTTTTTTTTTGTGAAGGTTTCGTGTTATTTAATATCTCTTCAATTCTTGCGTTTGTTAAATTTATATGTATAGGTACAAAGATGCATAGATGACATGTCGATTCTTATTACAACCTACGAAGGGACACATAATCATCCACTTCCTGTGGGTGCAACTGCCATGGCTTCTACAGCTTCTGCAGCAGCTTCCTTCATGTTGCTAGATTCAAGCAACCCTATTTCAGATGGCACTTCTAGTTTCACTCAAGCACCCCTTCCTTACAACGCCTTCCACCCATTAAACTCAGCTTCGAATTTCAGGAGCATAAACCCCAATGATCCATCAAAAGGGGTTGTTCTTGATCTTACAAGCAATCTCAGTGAACCACTACGTTTTTCAACCGGTAGCTCCTCAAATACTACAACTGACACCCGATTTTCTTGGATGCCAAACAAATACCATGGTGGTGGTGCAATCTCAATGAACAACAATTTTCACAAGCCTAGACCAGTGGACATTCATGATAGAATGTGGAAAGGAGAAGAAAGCAAGCAACTTGATGAGAATGTTTCTGCAATTGCCTCAGATCCCAAGTTTAGGGTTGCTGTTGCTGCAGCCATAACATCTCTCATGAATAAAGAGAGCCACAATGCTACTCATCCTATAGGGACTTCATTTGGTCCTAGGAGTGGCCAAAATGGTAGCTAGCTTTAGCTCTAGCTGGTAACACCAACTGGGTCGTAGAAATCTCTTTCAAAAATTGATAAGCCACACTTGATTTTTCAGCTTGAAGATAAGAGTAAGTTGAAGACAAAAGGAAAGTTATACTTTAGACATGTTCAAATAGACTTATCAGACATTACATTTTATATATGTATCTTCGTATAAATAACATACAGGGGTGGTTTCTTCTGTTTTCCTTGTAAAATTTTTGTGTTATTAATTGTTGTTGGTTGTTGTGAAGTAAGGTTTGGGTAATTAACTAGTTGGATGCCATACACGTGGAAAAGGGCTTTTAACTAATGCAGTTAGCATGGCTCAATTATTAAAGTATTGCATAGTCTTTCTTAACTGTGTTTTAAGTCTATATAATTGCACTAATGTGGTTTCAAGTTGATAGTTAAAGATATTTTATTCTTGTGTATTAATTTTTTTTTCTTTTTTGGAGGGATCCGTGATATATAGAAAATGAATATGGTCACGCGCTTCAATTAATTAATTGAGAAAAATTGCTACCTTAAGTTCAAATCCAGTTTAAAAGCAAGTGTTAATTAATGTGCATGTGTTCACACAGGTAAAGTAATTATCTGTCACTAATTAGTTCTTTGTATTTAGAATGTGAAGATGATGATGAAAGGGAAGACTAAAGGCGTATTTGATTTTATTTATTTATTTTATTTTATATAATAAAGAAAACAAATAGTTATACTATAGTAAGTATTAAATTCATACTATCACTTTGTTATGAAATCCTTTCTTCATTATTTGAAATATAGTAAGTGTTAAATTCATACTATCACTTTGTTCTGAAATCCTTTCTTCGTTATTAGAAAGAAATCATGATAAACTTACATACAAAAATAAATTCGTAGGTAATAATATTCGTATTGTAAATTTTAATTTAATTACAAATTTAAATTCGTAGGTAAATAACAGGAGTTACAACTTAATCTCTTATAGTGAGATGATCATTAGAAAAAATAATTTGTGATATTAGACATGCTTCCTTCTCACATGCTCATGATAATTTGTGTAATGATACAGAAAGACTTTTTGTATTAAGAATGTATTAAGTTAACTCTATCAATAGTATTAAAATTGTTTAATGTGAAGATAAAAAATGAGTGGACTAATAAATCTTCACAAAATTGCTTGAGTTGTTGAATGATGTGTTTCCTGAAGGTAACACATTGTCAACACACAATTATGATCCGAAGATATATTATATCCGATGGGTATGGAGTATCAAAATATTCATGCATGTCTAAACGATTGTGTTTTGTACAAGAAGGAGTTTGACAAATTACATCAACATCTCACAACGTGGAGTATCACAATACAAATAGAAAGATAAAAATTCTGAATCTAATAGTAAGAGTTCTCCTACAAAAGTCTTGTGGTATCACAATTGGAAAGTTTATTCAATAATACACTAGTGCAAATCAGAGATAAGAACACGGGTTATACGTCTCGGTTTTTAGAAAACCGAGGCATATGTAGAGGTGGTGACATTTTTGAAATTTTGACGAACTTATACACCTCGGTTACAAAAGAACCGAAGCATAAAAGATAAATTAACTCGGTTAAAAGCAAAACCGAAGCCTAATGTTCCTGTAATTTTTTGAAATTGTCCAACTACCTCGGTCCTCTCACCAACCGAGGCATATTCCGAAATCAAAAGGGTAAGGGTTAAATATGTTTTTAGTCCCTAAACTATTGGTCGTTTCTGGTTTTCGTCCCTCTTTCAAAGTAAGGTACAATTTGGTCCTCATTCTTTTCGAAACGTTCGTTTTAGTCCTCGGAATTTTGGTTTTAGTCCTCATTTGTTGCTAAATGAGGACCAAATTTGTAAACAGTGTTTAGTTTTCGAGGACTAAAACGAACGTTTCGAAAGAAATGAGGACCAAATTGTACCTTACTTTGAAAGAGGGACGAAAACCAGAAACGGCCAATAGTTTAGGGACTAAAAACATATTTAACCCAAAGGGTAATTTACCCTAATTTCAACTTGGGTATCTCCATTCTTTTCTCTCCTCTACGAAATTCAGAAGCAGCTTAAAGCTTCTTCACCGCGGCAGACGAGTGCGGCGAGTACGGCGACTGCGGCGAGGCATGGCGAGGTGGCGGCAAGGTTGCAGCAATGTGGCGGTGAGGTCGCAGCAAGGTGGCGGCGAGGTCGCGGCGTGGTCGTAGCGAGACCGTAGTGAGGCCACGGCGAGGTGGCGACGTGGTGGCGGCGAGGGGATCCTGGTTCGATGGCGTTTCTGCAGCGGTGGGGTTTCTGAAAGGGTTTAAATTCCATCTTCTTTCTTCTCTCTTTCTTCACCACGACAGACTCAATGTTGGCGGCAAGCGCGACGAGGCACGACGAGGTGGCGGCGAGGTCATGGCGAGGTTGCGGCGAGGACGTCCTGCAGCGGTGGCATTTCTGCGAGAAGGGGAGGCATCAACCTTCAGGCGGTGCGACATTTTGCCGGGGTTCGAACCGAGGTTCGAGAGGGAGTGGTTTCTTCGAGACAGGTCGGGTGGTTGCATGCGGAAGAGCAATTTGTCCAGGTGTGGAAGCAGAGAGGGGTTTGTGGAGGTGGCACATGTGAAGGTTCCGGACACTTTGAAGGTGCGTCTAGTGGCGATGATCGGAATGAGAGAGTGCAGAGAAGATGCTTGAATTGGGTATGCAGAGAAGATGCAGAGAAGGTGTGCGGCTTACATGAGTGCGAAGAGAGCTCGGAGAGTGGATGCTCTTGA