Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_04293 LG1 58935492 58936772 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription by RNA polymerase II, positive regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, positive regulation of transcription by RNA polymerase II, positive regulation of transcription by RNA polymerase II, positive regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II
Cellular Component   located in   nucleus
Molecular Function   enables   protein dimerization activity, RNA polymerase II cis-regulatory region sequence-specific DNA binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, DNA-binding transcription factor activity, RNA polymerase II-specific, RNA polymerase II cis-regulatory region sequence-specific DNA binding, protein binding
SNP Position Effect Amino acid change
A/T 58935534 stop_gained p.Lys15*
A/T 58935810 missense_variant p.Ile107Leu
G/T 58936061 intron_variant
T/G 58936112 intron_variant
T/C 58936121 splice_region_variant&intron_variant
T/A 58936161 stop_lost p.Ter186Argext*?
G/A 58936162 stop_retained_variant p.Ter186Ter
G/A 58936172 synonymous_variant p.Lys189Lys
G/A 58936231 missense_variant p.Cys209Tyr
G/A 58936330 stop_retained_variant p.Ter242Ter
A/T 58936340 missense_variant p.Leu245Phe
T/A 58936380 stop_lost p.Ter259Argext*?
T/C 58936517 synonymous_variant p.Ile304Ile
G/C 58936528 missense_variant p.Cys308Ser
G/A 58936704 stop_retained_variant p.Ter342Ter
C/A 58936707 missense_variant p.Pro343His

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_04293.1
MEGKLIKQKQKREIKKIENNRDLLITFTKRKRDIHKKASELSTLCGAKVDILMHTSSGNWFSYGEPSHQAMIVSTDKQNLSKDVINLVEDQTKLEIDELCAKNKRLIDQMQYEEEREKELTEIMKTRNAHGWWEAKDLNHEQAKEMRASLMELKQKLENELSIKCGEKDKSSHAPPNQVNGFNFCPDYTRGSSISEVVFGANNEAYGIVATESILPDISFSPMDEGKDFKFFPYGERREDLFDIVYPHKYLYHGYSFFVDDSGSTFASFPAKQVQGLNPNDGNGSTGSTHIFSSSSNQSQGNNSFVPNANNETIKIRGNENGGGNDSCALLSSSHLNQQQETDLFMDIENELRDDFSFPPFPWS*


CDS Sequence:
>Vu_04293.1
ATGGAAGGAAAACTGATCAAACAAAAACAAAAACGAGAGATTAAGAAGATTGAGAATAATAGGGATCTTCTCATTACTTTCACCAAAAGAAAACGTGACATTCACAAGAAAGCCAGTGAGTTATCAACTCTTTGTGGAGCAAAAGTTGATATACTTATGCATACTTCATCTGGAAACTGGTTTAGTTACGGAGAACCTTCTCACCAAGCAATGATTGTTTCTACTGATAAACAAAACCTTTCAAAAGATGTCATTAATCTTGTGGAAGATCAAACAAAATTAGAGATAGATGAACTTTGTGCAAAAAATAAGAGACTTATAGATCAAATGCAGTATGAGGAAGAGCGGGAGAAAGAACTTACAGAGATTATGAAGACAAGAAATGCCCATGGTTGGTGGGAGGCCAAAGATCTTAATCATGAACAAGCTAAAGAAATGAGGGCATCTTTGATGGAACTCAAACAAAAATTGGAAAATGAACTTTCTATCAAGTGTGGGGAGAAAGATAAGTCTTCTCATGCTCCTCCAAATCAAGTGAATGGATTCAATTTTTGTCCTGATTACACAAGAGGAAGTAGCATATCTGAAGTTGTCTTTGGTGCCAATAATGAAGCTTATGGAATTGTTGCAACTGAAAGTATTCTTCCTGATATTTCTTTTAGTCCCATGGACGAAGGGAAAGACTTCAAATTTTTTCCATATGGTGAACGTAGGGAAGATTTGTTTGATATTGTTTATCCTCACAAATATCTCTATCATGGATATAGTTTTTTTGTTGATGATAGTGGTTCTACTTTTGCTTCTTTTCCTGCAAAACAAGTTCAAGGACTTAACCCTAATGATGGAAATGGAAGTACTGGTAGTACTCATATCTTTTCTTCATCTTCAAATCAATCCCAAGGAAATAACTCATTTGTACCTAATGCAAATAATGAGACTATCAAAATAAGAGGTAATGAGAATGGTGGTGGAAATGATAGTTGTGCTCTCCTCTCCTCTTCCCATTTGAATCAACAACAGGAGACTGACCTGTTTATGGACATTGAAAATGAGCTAAGAGATGATTTTTCTTTCCCTCCATTTCCATGGTCTTAA


Promoter Sequence:
>Vu_04293::LG1:58933492-58935492(+)
AAGGAACTAGATTTAGAATAGTTCACATACAGAAATCCAATGCCAGTAAATGATCGAACATGGTAAAGTAAAATATTACTGAAGTTGGACGAACGCTATTTTACCAAGATTGATTATACAAGACATGAGTACGAGCGCTTGGTATAAGACCGAGCACTAATAAACTTCTAATAAAAGGTTTGATAAATATATTAAAATACTATTGAAGTGGTGTTTACGAACAACAATAATATACAATTAAATAAATATATATTTTTGAGTTTATCACAGTAGACTCAGGCACAACTATGCTCGGCCGAACGCTCAAGCATAATATTACCACACGAGGGCGCTCGTCCTATACTAGGATTCTCTCCAAATGAAAGAATCTCGTTTCCACTAGGTTTACTAGGAAAACCGAACGGTCAATGACCGTTCAGTAATGAACGTACTTTATCATAGTGAAATCTCATATACATAATCGATTTACCTTCAAACTCATTTTTCTTAACTTATAACTTCATAACTTCTTAAATTTATAAAACTCACATCATAATCAACTTTCATACTTCATACAATCCATATCATATAAGTTTCATATATTTCACACATTACAACCTAACTCAGCCATATTTCATTTTATCTCATTAAATAAACGAACGTTCATTCAATCCAATCATATCAACTATCATGCATCAAACTCATTCAATCAACTAAACGAACGTTAAAACATTTCAACAGCATACAAATTAAATTAAATAAGCTTCCCTTACCTGGATACGTGAGTGAACGTCCTAAACATAGGTTCTTGGTTTGCCCGACTACAGCTTTCTACCCTCAACGATCATTTTACTCTTCCAACTAAACCAACAACATCAAAATAACTTAGACTACACCCCTGGATGCAACCAGAACTTGGTTTTGCATGAAACAAAAGAACGAACGACTAAGGGAGAAAACTTACCAGCTCAAACTTGAAACTTGTTCGGTTCAAGATGAAGCTTGGGACGCCGGGAATGCTTCCACGGTGCCTGAACGTTGATCGGAGCAGAGAAAATGTGAGTTAACATAGAGAGAAGGGAGAGTTTTCTAGAGAGAAGAAGGAGAAAATGAAAGATCAGATTTTTTTGGAAGACGAAGGGTGCATGCAGAGAGAGTGGGAAGGAGGTTTCAGAAAATCATTTTTCTTCCCACGTAAAACGAGCGTCCGCTCTTCTGCTGACACCTGCATCCCACTATCTGATTTCATATCCTCGTTTCTTGACACCTGGCGTCCGCGCAGAGGGTTTTGGGTGCGTTTTAAATGAGCTGACAGGAGGGGTTTTGGGTGCATATTTACGAGGTCTGACAGTAACCAATATAATATTTTTTAAAATATAAAATTATTAATATATAAACATGATTTAATTAAAAATATAAAAGAAGACATGTATTTACTAGAGTAAAGCATAATGATGTAGAAAATTTATTGAAATTGAAAGTTACACTATATATTTATTGTTTTCCCTTAATCATCGGCAACAGATATACTCTATTATTAGATAAAAAATTATAAGAATGAGTTTTTAATTAATAAATATAAAAAAATAAAGGTAATATATTAATGTTTTATTTATTTATTTATACAATTTAAAATCCTTAAAATACATAAACTATATGTTTTATTTACCTATCATTAATTATTGGCTAATCAAATCCTTACATATTTAAAATTCGTAAATAAAAACCTTACCTTGCATGCTCACACATAAATTTTCTTGAGACATTAATTTTTTTATTAATTTGACATTTTATAAGCATAAGTATAATTAAATTATGAATCTCTATTATTAGAAAACTTTACAAGCATACCAAAATTAGGGAAACAAATGAAATGTATGAAACACGTAATATTTAATTTTATTATGAATATTGCATTAATTACCTACATTTTGTTTCTCTCTATTAACATCACAACTCCAAGCCAGATACAAAGAGGCTCATCACTACATACCTTCCTTCCTTTGTTCTATCAATCAGAA


Gene Sequence:
>Vu_04293(+)
ATGGAAGGAAAACTGATCAAACAAAAACAAAAACGAGAGATTAAGAAGATTGAGAATAATAGGGATCTTCTCATTACTTTCACCAAAAGAAAACGTGACATTCACAAGAAAGCCAGTGAGTTATCAACTCTTTGTGGAGCAAAAGTTGATATACTTATGCATACTTCATCTGGAAACTGGTTTAGTTACGGAGAACCTTCTCACCAAGCAATGATTGTTTCTACTGATAAACAAAACCTTTCAAAAGATGTCATTAATCTTGTGGAAGATCAAACAAAATTAGAGATAGATGAACTTTGTGCAAAAAATAAGAGACTTATAGATCAAATGCAGTATGAGGAAGAGCGGGAGAAAGAACTTACAGAGATTATGAAGACAAGAAATGCCCATGGTTGGTGGGAGGCCAAAGATCTTAATCATGAACAAGCTAAAGAAATGAGGGCATCTTTGATGGAACTCAAACAAAAATTGGAAAATGAACTTTCTATCAAGTGTGGGGAGAAAGATAAGTCTTCTCATGGTAAGAGATTTTACTATTATTATTATGATTCCTACTTGATTTCATCTTGGTTTTCAAACTAATCTTTTAAAGTGATAACATTTTGGTGGTGGTGGTGGTGTTGTTGTTTTAGCTCCTCCAAATCAAGTGAATGGATTCAATTTTTGTCCTGATTACACAAGAGGAAGTAGCATATCTGAAGTTGTCTTTGGTGCCAATAATGAAGCTTATGGAATTGTTGCAACTGAAAGTATTCTTCCTGATATTTCTTTTAGTCCCATGGACGAAGGGAAAGACTTCAAATTTTTTCCATATGGTGAACGTAGGGAAGATTTGTTTGATATTGTTTATCCTCACAAATATCTCTATCATGGATATAGTTTTTTTGTTGATGATAGTGGTTCTACTTTTGCTTCTTTTCCTGCAAAACAAGTTCAAGGACTTAACCCTAATGATGGAAATGGAAGTACTGGTAGTACTCATATCTTTTCTTCATCTTCAAATCAATCCCAAGGAAATAACTCATTTGTACCTAATGCAAATAATGAGACTATCAAAATAAGAGGTAGTTATTATGAGTTTCCCTCTCTTATATTGTCATCAATGTTGAGATAGTGACTCCTTTGTTTTGTGATGTAGGTAATGAGAATGGTGGTGGAAATGATAGTTGTGCTCTCCTCTCCTCTTCCCATTTGAATCAACAACAGGAGACTGACCTGTTTATGGACATTGAAAATGAGCTAAGAGATGATTTTTCTTTCCCTCCATTTCCATGGTCTTAA