Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_04348 LG1 59971421 59971859 transcription factor RF2a-like isoform X1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   reproductive shoot system development, reproductive shoot system development, reproductive shoot system development, positive regulation of gene expression, reproductive shoot system development, reproductive shoot system development, negative regulation of gene expression, reproductive shoot system development, reproductive shoot system development, positive regulation of gene expression, reproductive shoot system development, negative regulation of gene expression
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, protein binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, protein binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, protein binding
SNP Position Effect Amino acid change
A/G 59971602 intron_variant
G/A 59971631 splice_region_variant&intron_variant
A/G 59971672 missense_variant p.Val63Ala
T/C 59971785 synonymous_variant p.Gln25Gln
C/T 59971793 missense_variant p.Gly23Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_04348.1
MVYHPHTLIGNESPKLLPLQNRGGQHSPSNSLEGKTSETSIEFGNGEFSSEELKKIKENDKLVEIAMVDPKREKRILANRLSAACSKERKMRYISELELKVQTLQTESTTLSTQFTKL*


CDS Sequence:
>Vu_04348.1
ATGGTATACCACCCTCACACCCTAATTGGAAATGAATCACCTAAACTTCTTCCTCTGCAAAACCGGGGTGGTCAACACTCGCCTAGCAATTCACTAGAGGGTAAGACATCTGAAACAAGCATAGAGTTTGGAAATGGTGAATTCAGCTCGGAGGAGCTAAAGAAAATAAAGGAGAATGATAAACTTGTTGAAATTGCCATGGTTGATCCTAAACGTGAAAAAAGGATTTTGGCCAATAGGCTATCTGCTGCTTGCTCGAAAGAGCGGAAGATGCGATACATTTCTGAATTGGAGCTTAAAGTCCAAACACTTCAGACAGAGTCAACCACATTGTCTACTCAATTTACCAAATTATAG


Promoter Sequence:
>Vu_04348::LG1:59971859-59973859(-)
TTAAAATAACAAAAACAGAAAAAAAGAAAAATAAACAAAGTAAATCTCGAAACATGGCATCGCCTTCTGCGGCGTTCGAATTTCGCCTTAATCGATGTTTGAACGCCAACGAGACCGTAATCGTAATTCGAACTTCGGTTAACTATTACGATTAAGGCGTTCAATCCAAACAAGGACAAATTCACACATCTGTGGTGATGGACGACTTCAAATGCAGATATCAAGTTCCCAGTGGAGGGCACAGATCGAAAGAGTTGCGCCAAATGAAATGCACCCATGGACGAGGACAAACTTACACAATCAGGAATAAGGGAGGCTGTTGGGATGAAAGCGCGAGAGAGGGTTTTATTTACATAACCACGAAAGTGACTATTTGGAAGTGTAAGGTTTTGGTTTTAAATTTTCAATAATTTTAGTTAAAAATTTCTTCATTTGCAGATTTTCAAAAGGTTATCAAGGTAATTATGGGATGCAACGAAGGGCTTTGGATGTGCATGTAATAGCTTTTATATTTGAAAGTAATGGTAATATTCTAATCAAATAATAAAATAAAATTTGATAAATTTAAAATAACAGGCAATTCAAATGCATCATGTCGTCATGATTTGAAATTTTTTCCCCTAAAACTAGGTTTAGGTAGGAAATTTCTTATCATTTTGATTAGGGGATATAAGTAGCTCTTGGCAACCCAAATTAGTGTATTAGGTCTATACATTAGACTCATTCCTATTTCTTGCATTATCAAGTTGTAGACTATTAAAATTCAAACAAATAATTATGCATCATTAAAATTGTTGCTTGGATGAGGCCCAACTGAACACGCTTTTTTCAACACTCATAGAAAATTGCATAGATAAGATTCAGCACAAATAAAAGACACTTTACCTCTGTCCTATGATCTGCAAATGGTCCTTCCCTGCTTTCACTTGTAGTCTGACACTGCACATGATTCCATACCTTATTTCAAATTTTCCATTAACACTTCTATTCATAACATCTTTTAAGGTTCAAATTCTTCATAAACATGGTAATGCATTCTTCACCATCAACATTTTCAAATCAACACCATTAATAAACTCACGTTCTTGTTTTATGTAAGTCCCACAGTATCCATTAAATGATCACAAATTAAAATCATTTTCATTCACTATTAAATTTTAAATTATTAGTTTAAACCCTCCGTTGGTTATTAAGTTTGTTGAAAAATCTCAAGTGAGTCCTTGTATTTTAACGATCTCAATTGAATCATATTATTTATAAAATTGAGTCAATTGAGTCCAAATATTTTAAAAAATTGAGCCAATTAAATTATGTTTGTTAAATCTTCACTGACGACGTTAATAGTGGCTAACGTGTTGCACGCCGATATCAAAATGTTTAATTATGTGAAATTTTATTTAATTTAAGACATTGTGACATATGAGAAAGGGTTTTAGTTATCTTCAGATTAGGGTCCACCGTCACCGCCACCGCCACGGTCACCATTTTCATTATCTAGATCCTCTTCAACCACAGCCGCGGACCAAGCAATATCAGATCCATACCTGCAGAGAAGCTTAGATGAACAATCCCAAAAATCCCCAATCGAAACTGAGAGTCTCGCACCGTGATACACCGAAGGACGAAAACCCTCTTCGCCGTAAAGACATTGCCGCTGAGACGCCCATTGGCCCAAAAATCATCTTTCTTCGCTGCAACTTGAGTGCTTGACAAACTATTGCGGAATTGTCTCTCTTGGAGTATAGTATGCTTTGTTATGCTCCATCACTTATAGTCGCTTCTGCAATTTTTTTGGCCAAATTTATACTTTGTTGAAAGTTGTGATTTTTGAGTAGAAGGGTTGGCCGTTGTTGAGTCAATGGAAGGTGTTGATCAAAGTAATTTGAAACGAAATGGTAGTGGTTTTGGTTCATCATCGGGAGCAAATCTCAGGCCCCCAAATCGATTGAATATTGTTGTGCCTGTTAGTCAATTGGGTGTTGCAGAGAATCAGAAACCCT


Gene Sequence:
>Vu_04348(-)
ATGGTATACCACCCTCACACCCTAATTGGAAATGAATCACCTAAACTTCTTCCTCTGCAAAACCGGGGTGGTCAACACTCGCCTAGCAATTCACTAGAGGGTAAGACATCTGAAACAAGCATAGAGTTTGGAAATGGTGAATTCAGCTCGGAGGAGCTAAAGAAAATAAAGGAGAATGATAAACTTGTTGAAATTGCCATGGTTGATCCTAAACGTGAAAAAAGGTAACAATAGTCTTATGTTTTACTGTTTTTATGTCGTTCTCATTTGGTGGAAAACAACTAAGACTCTAAAATATTTGTCTAGGATTTTGGCCAATAGGCTATCTGCTGCTTGCTCGAAAGAGCGGAAGATGCGATACATTTCTGAATTGGAGCTTAAAGTCCAAACACTTCAGACAGAGTCAACCACATTGTCTACTCAATTTACCAAATTATAG