Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_04408 LG1 60927546 60931541 PREDICTED: zinc finger CCCH domain-containing protein 17
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   positive regulation of transcription, DNA-templated, poly(A)+ mRNA export from nucleus, cellular response to hormone stimulus, poly(A)+ mRNA export from nucleus, poly(A)+ mRNA export from nucleus, positive regulation of transcription, DNA-templated, cellular response to hormone stimulus, positive regulation of transcription, DNA-templated, cellular response to hormone stimulus, positive regulation of transcription, DNA-templated
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   protein binding, protein binding, mRNA binding, mRNA binding, mRNA binding, protein binding
SNP Position Effect Amino acid change
T/A 60927676 5_prime_UTR_variant
C/A 60927716 5_prime_UTR_premature_start_codon_gain_variant
T/G 60927727 5_prime_UTR_premature_start_codon_gain_variant
C/T 60927759 5_prime_UTR_variant
G/T 60927970 intron_variant
A/C 60928183 intron_variant
T/C 60928300 intron_variant
C/G 60928301 intron_variant
T/G 60928745 intron_variant
A/T 60928755 intron_variant
G/T 60928877 intron_variant
T/A 60929013 intron_variant
T/C 60929122 synonymous_variant p.Arg55Arg
A/T 60929126 missense_variant p.Asn57Tyr
A/T 60929159 missense_variant p.Asn68Tyr
C/G 60929172 missense_variant p.Pro72Arg
A/G 60929176 synonymous_variant p.Lys73Lys
T/A 60929180 missense_variant p.Ser75Thr
T/C 60929185 synonymous_variant p.Phe76Phe
C/T 60929186 missense_variant p.Arg77Cys
G/T 60929525 missense_variant p.Ser147Ile
G/A 60929749 missense_variant p.Val222Ile
G/C 60929900 missense_variant p.Arg272Thr
C/A 60929912 missense_variant p.Pro276His
G/T 60929914 missense_variant p.Gly277Trp
T/C 60929918 missense_variant p.Phe278Ser
T/C 60929961 synonymous_variant p.Tyr292Tyr
C/T 60929962 missense_variant p.His293Tyr
A/T 60930260 missense_variant p.Asn392Ile
G/T 60930575 missense_variant p.Gly497Val
G/A 60930793 missense_variant p.Gly570Ser
G/C 60930816 synonymous_variant p.Gly577Gly
T/A 60931380 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_04408.1
MVTPQPQLQVQPQQPAPSSQDEALKRNTDCVYFLASPLTCKKGNECEYRHSEYARVNPRDCRYWLSGNCLNPKCSFRHPPLDGLLGTQAATAGGPSVSAPPSQIPTASATHASYNSTKQAVPCFFFQKGLCLKGDRCAFMHGPPAPSTGNKVAAQVPVTSQGAENPGFKKPFGTNEKYTQERKTSQGSVAKSGGGPEPKPAPKIESAPKRNMFELEKEMLPVGFDNEASRFKTSSPPVTNGPTVVRSSRLHQARVPDDHTFHSGKDNDEFLRESSPGFDVLVADELRNSDYYHGEDEFGKARGPDERNLDSLNEYDLGHSGEYGLAADIDRERFRVPQGYESYDHTQEPYLWEQHRKASAHLDRRTRRRSGSPENAEVSDLRHHLSKRRKVNGLKSVVSHDYALEGHGEEQSHRSFSRKDSLQLPLNESSLGNRFRGRIKLPGNGGADQLERDDRGRIRGRLLPGRLQATQQGRIHDRMRGRLQDDERRNSKDRLMGRELIGGDRSDFAGPKSLAELKNGRNPENREPQPLGKRGTLRDDHPQSEDDLQFDGPKPLSEILKEKKRGGPGGRADADSGNGKSSNIKNEEVTNGSDPTQVTNTQNGVLSEIKEYVNNQNNEESKVEVTDAVGGETGATDGQYEEGIYDEAGEDQYYEGDDQREGDYEYEQGDEGYYEYEQGEEGENQEEEYMDEEDGDDFAKKIGVIHS*


CDS Sequence:
>Vu_04408.1
ATGGTTACCCCACAGCCACAGCTTCAGGTTCAGCCTCAACAGCCCGCACCCTCTTCGCAAGATGAGGCCTTGAAGAGGAACACCGATTGTGTCTACTTCCTTGCATCTCCTTTGACATGCAAAAAGGGAAATGAATGTGAGTACCGCCATAGTGAGTATGCACGTGTTAATCCTAGGGATTGTCGTTATTGGTTGAGTGGCAACTGTTTGAATCCCAAATGTTCATTTCGTCATCCGCCTCTTGATGGCTTGTTAGGAACACAGGCAGCAACAGCTGGTGGACCATCTGTATCTGCACCCCCATCACAGATTCCAACAGCATCCGCAACACATGCATCTTATAATTCCACTAAACAAGCTGTCCCTTGCTTTTTCTTCCAAAAGGGGCTTTGCTTAAAAGGTGACAGATGTGCCTTCATGCATGGACCTCCTGCTCCTAGCACTGGTAATAAAGTAGCTGCTCAGGTTCCAGTTACCAGCCAAGGAGCCGAGAATCCTGGTTTTAAGAAGCCTTTTGGAACCAATGAAAAATATACTCAGGAAAGGAAAACTTCCCAAGGAAGTGTTGCAAAGTCAGGTGGGGGTCCTGAACCTAAACCTGCCCCAAAAATTGAATCTGCTCCTAAAAGAAATATGTTTGAATTGGAGAAGGAAATGCTACCAGTAGGATTTGATAATGAGGCTTCTAGATTTAAGACAAGTTCTCCACCAGTAACCAATGGCCCTACTGTAGTCCGGTCAAGCCGTCTGCATCAAGCTCGTGTGCCAGATGATCACACTTTCCACAGTGGCAAGGACAATGATGAGTTTCTCAGAGAATCGTCTCCTGGGTTCGATGTCCTTGTAGCCGATGAACTTAGGAATTCTGATTACTATCATGGGGAAGATGAATTTGGTAAAGCAAGAGGTCCAGATGAAAGGAACTTAGACTCTTTGAACGAATATGATTTAGGGCATTCTGGTGAATATGGTTTAGCAGCTGATATTGATCGGGAAAGATTTCGTGTGCCCCAAGGTTATGAGTCATATGATCACACGCAGGAACCATATCTGTGGGAGCAGCACAGGAAGGCTTCGGCCCATTTAGACAGAAGGACTCGCCGCAGATCTGGTAGTCCTGAAAATGCTGAGGTCTCAGATCTCCGACATCACTTATCCAAGCGCAGAAAGGTCAATGGTTTGAAATCTGTTGTCAGTCATGATTATGCCCTTGAGGGTCATGGTGAGGAACAAAGTCATCGATCCTTCTCTAGGAAGGACTCACTCCAGTTACCTCTGAATGAGAGCTCCCTCGGTAATCGCTTCCGTGGTAGAATAAAACTTCCTGGAAATGGTGGTGCTGATCAGCTAGAGAGGGATGACAGAGGGAGAATTAGAGGCAGGTTGTTGCCTGGAAGGTTGCAGGCCACTCAGCAAGGAAGGATCCATGATAGAATGCGAGGAAGGTTGCAAGATGATGAGAGGAGAAACTCAAAAGATCGATTAATGGGGAGAGAACTAATAGGTGGTGATAGGAGTGATTTTGCTGGGCCAAAAAGTCTGGCAGAGCTTAAAAATGGGAGGAACCCTGAAAATAGGGAACCACAACCACTGGGAAAGAGAGGAACTTTAAGAGATGATCACCCACAGTCTGAAGATGATCTTCAGTTTGATGGTCCAAAGCCTCTCAGTGAAATTTTGAAGGAGAAGAAAAGAGGAGGACCTGGAGGCAGAGCTGATGCAGACTCGGGGAATGGCAAATCATCTAATATTAAAAATGAAGAAGTTACCAATGGCTCAGATCCTACCCAGGTCACGAACACACAAAACGGTGTGCTGTCTGAGATCAAGGAATATGTCAACAATCAAAATAATGAAGAATCCAAGGTTGAGGTCACTGATGCAGTTGGAGGAGAGACTGGTGCAACTGATGGTCAATACGAGGAGGGAATATACGATGAAGCCGGTGAAGATCAGTATTACGAAGGTGATGATCAGAGAGAAGGAGATTATGAGTATGAACAAGGTGATGAGGGTTACTACGAGTATGAACAAGGTGAAGAGGGTGAAAATCAGGAGGAAGAGTACATGGATGAAGAAGATGGGGATGATTTTGCTAAGAAGATTGGTGTCATTCATTCATAA


Promoter Sequence:
>Vu_04408::LG1:60925546-60927546(+)
ATATAAAAAAGAAAAGAAATAAAATTCCTGTTTACACATTATGCATGTGAATAATATAATTAATTTAAAGTCTGTTGTATATTTTCTTCTAAATTAATATACGATGTCGTGATTTTTATGTATTTTTGAAAATGTGACTAGTAGAAGACACTCATCCATATAATTAATTTTTACAAAAAAAAAAAAATAAAATCAAATCAAATGACGAGATCCGAGAGGCAATATTTTATTGATAAGAATTAAGCTTGTGGAATGTTTTCTACATCGTCTTGAATTGGTAGGAATCTGCTGAGTACATGATTTAGTTAAATTTTACTTTGAAAAATAAATTCTATGTGTATGTAAATATTAATCTTATTGATGTTTGAAATGTACACATTACGTTTATGTGTATCTGAACAGTTATTTAATTGTTATAACAAAAGTTAAAGTTATATAAGATTAGGACCAAAAGTTTAAAATTTAATTTCAATCTTCCTTCATTTAAATTTATTTTCATATTTTCTTACATTATAAAATAAATATAATTATGAAAACGACTGTTTCAAAGTAAAATACATGTTTTAAATAGACCAATCGCATATTAAAATTTGCGTTAAATTGATAAATAGAAAATATACTTAATACATCAATTTATTTAAAAATCAATAAAATAATTAAAAATAATATATTATTAAACTAGATAAAGAAACAGAGAGAATTCATTAATAAGCTTCAAATAAATACTTAATCCAGTATCATAAGTGATAATCTATCATTATGAATCAAGATCACCAATTTATTAAATCATATAAAAATTATGAGGGAAAATTTATTAATAAATTTTAAATAAATATCTAATAATTATTATAAATGACATCAATTATTTGTAAAGTCATATTAATTATCATAATTGATATTTCAAGATAATAAACTATTGTGTTTTTTTTCTGCTTAAAATTTAAAAAATAAAGAGAGTTGTGAAATAAGATTTCAACAATAAGCTTATCTCAATAACTCAAAAATCTATTCAAAAGTAAAGTATGATTCACACCACCTATTGATGAAAACAATATTACATAAAAATACGTATATCGATCACCAAAACATTGTATAATATATTGAAAATCAACATTATTTACTTCAAGTTATTAGTTTTTTCTTATAATATATTTTTTGGTATGACTTCAAAATATATTAATTTTGATATATTATAATTTATTTCGGTATCTCAGTCTTATGATATATAAGGGTCAAAATTAATAACAGTTTAAATACGTTTTTTTTTTCAATTTTTCAAAGTAATTTTTAAAAACAAAATTATAAATAATGCGAAAGATTTTTGAATTCTAAAACAAACAATATTTTAGATGTAATAATTAACTTTTCTTATAAACATTAGTCCAGTAACAACGAAAATTTTCTTAATTTTTTCCCGAACAAAAACATTTTAAATATCCACTCCAAAGTTCCAAACTTCAAAAACACAAACTACACTGAACAAATTAATATAAAAATAAAATCTAGAGAATTCAAATTCAACACTAACTTACTTCATTAATGATGATAAAGTAATAACACCATTAGAATTAATTAAAATTTTGATGGGAATATTTTATCCTTTCCCCTTTGTAATCTAAAAGGGTGATTGTATATCCAAGTGCTCGACTAATATAATGTTATGTTAGTTTTGGTGTATATGAAAAATAATTCTTTTAATTTTCAATGGAATTTTTTGGTGCTATTAATACTATTTATGGTTAAGACATGAAAATGTAAACTCAAACTGAAATTTATTATCCAAACTCAAATATATTATCCCATTGGCATTATAGTTTGAAAAAATATATATAGAGAGAGATAGAAAAGATGATGAACCAACAGAAAGAAGGCAAGTGTCCCATTACATTTTTGGTATGAAACATCGAAAAAGAATCATTAACACACAAACACAGAACAGACATATTAATACGAATTTCTACAAAAATAATAAATAAAAATGTAAACAGAAGCCGAAACCA


Gene Sequence:
>Vu_04408(+)
AGGCTAGGCTCACCCTTACCCTCTCCTCTATGCTCCATATAAGCCCATCACATTCACATACTCCAACCCACTCTCTCTCTCTAAGTTCTGACCCCAATTTCTGTGGCGGCTCTCTCTCTACTTATTCTCTTCTCAGATTGAGATTTGGATCCATCTTCTTCTCCTTCTTTCTGTCTCTGATTTGATCTTTTCCTTCCTCTTCGTGTTTTTTTTCATCCGGTTGGGTTGGGGTCTTCAGCTTCAACTTCAACGATAGCTATGGTTACCCCACAGCCACAGCTTCAGGTTCAGCCTCAACAGCCCGCACCCTCTTCGCAAGATGAGGCCTTGAAGAGGAACACCGATTGTGTCTACTTCCTTGCATCTCCTTTGACATGCAAAAAGGTTCTTTCTGGCACTTTCTTTTTGTTTTTACAGGAAAGAGGGGGGGAAATCTCCTTTTTGCCGCTTTCGGAATTCTCTGCTTTAGGGTTTTCAGATTCGTATGTTTCTGCAAATAGTTTTTGTGGTTATTTATTTTCAATGGGGAAATCGAATTTTGTGGAAAAGGGGTTGTGGAAGTCTGTGTATGAATTATCGAATTTTCAAAATTGGGGATGGCGATAGGAAATTCTGTGGATTGAGAGGGTTTTATTTTACTTTCTCTTTTTCGGATTGCGTTTTTTGATGTATAGTTTTTGTGAAACTGTTATTATTGATCGTTGTTTACTAATTTGATCTTTTTTGGCTTTATTTTTTTTTTGTATTTTTTCGCTCCTTTCTCTTTTATTTGATAAGGTGAGGGGAATGAGGGAGAACGGAGTTCTTGAACCCTATTACGATTAGATATAATATTTTTTTTTTAATTTTTTAATTTTCTTTAGTTAGGTCAATTGTGTGGATCCCGCTGAAAAAAATAAGGTTGGATCAATCAAGTTTAGTCTTTTTTTTTTGGATGGTTTAAAGTGTTATTCAATGTGTTCTGGTTGTTTCTGAAAGCAAAGCAAGAAATTTGCATAATGAATGAACTTTCATTACAACCAAATGTTTAACAGAGTGCTACTACGTGGTGACAAGAGCGTATACGAGTCATGTTGATCGATTAGTCTCAATAGTGTTCTGTTAGCAAGATCTAGGATGTCCACTACTGTTGCTGGCACTGTTTTGCATAATCCTTGAAGATTTTACTGTTATCATCAAACCGACTGCAACATTTTACTTGAAATTGATATTTGTTTCCATAGTTTTTCTGTTAAATGCGAGTACTTGTTTGCTTAGTTCTTCTAAATGTGTCGTGCCATTTCTTCTTGGCAAACAAATCGAGTAATTTTACTGTCATCCTGTTCTTTTTGGGCCGTTGTGATGCTGTTTGTTTGTTTTTTTCTGTCGTGAGTATACTATTGTATGTAGCATTGCAACTTTCCGATATATGCTTTTTGCATATCCGAAAGAGCAAGCATTGGTTATCAAGAATGTGAGGCTGTCTTGTCATCTAAACATTTTTAACTCTGGATTTTGTTGCTGGCGCATTTTGATTTGTTTTCCTTTTGTTGGAACAGGGAAATGAATGTGAGTACCGCCATAGTGAGTATGCACGTGTTAATCCTAGGGATTGTCGTTATTGGTTGAGTGGCAACTGTTTGAATCCCAAATGTTCATTTCGTCATCCGGTGAGAGTCTCTATTCATGAAAACCAAATTTTATACTTTCATGTCAATTTTTGGCCTACTTGTCTATTTTTCTCTGTTATTGTCTCATTGTATGGACTTTGCTAACTGCATTTTGTTTTTGTATTCAGCCTCTTGATGGCTTGTTAGGAACACAGGCAGCAACAGCTGGTGGACCATCTGTATCTGCACCCCCATCACAGATTCCAACAGCATCCGCAACACATGCATCTTATAATTCCACTAAACAAGCTGTCCCTTGCTTTTTCTTCCAAAAGGGGCTTTGCTTAAAAGGTGACAGATGTGCCTTCATGCATGGACCTCCTGCTCCTAGCACTGGTAATAAAGTAGCTGCTCAGGTTCCAGTTACCAGCCAAGGAGCCGAGAATCCTGGTTTTAAGAAGCCTTTTGGAACCAATGAAAAATATACTCAGGAAAGGAAAACTTCCCAAGGAAGTGTTGCAAAGTCAGGTGGGGGTCCTGAACCTAAACCTGCCCCAAAAATTGAATCTGCTCCTAAAAGAAATATGTTTGAATTGGAGAAGGAAATGCTACCAGTAGGATTTGATAATGAGGCTTCTAGATTTAAGACAAGTTCTCCACCAGTAACCAATGGCCCTACTGTAGTCCGGTCAAGCCGTCTGCATCAAGCTCGTGTGCCAGATGATCACACTTTCCACAGTGGCAAGGACAATGATGAGTTTCTCAGAGAATCGTCTCCTGGGTTCGATGTCCTTGTAGCCGATGAACTTAGGAATTCTGATTACTATCATGGGGAAGATGAATTTGGTAAAGCAAGAGGTCCAGATGAAAGGAACTTAGACTCTTTGAACGAATATGATTTAGGGCATTCTGGTGAATATGGTTTAGCAGCTGATATTGATCGGGAAAGATTTCGTGTGCCCCAAGGTTATGAGTCATATGATCACACGCAGGAACCATATCTGTGGGAGCAGCACAGGAAGGCTTCGGCCCATTTAGACAGAAGGACTCGCCGCAGATCTGGTAGTCCTGAAAATGCTGAGGTCTCAGATCTCCGACATCACTTATCCAAGCGCAGAAAGGTCAATGGTTTGAAATCTGTTGTCAGTCATGATTATGCCCTTGAGGGTCATGGTGAGGAACAAAGTCATCGATCCTTCTCTAGGAAGGACTCACTCCAGTTACCTCTGAATGAGAGCTCCCTCGGTAATCGCTTCCGTGGTAGAATAAAACTTCCTGGAAATGGTGGTGCTGATCAGCTAGAGAGGGATGACAGAGGGAGAATTAGAGGCAGGTTGTTGCCTGGAAGGTTGCAGGCCACTCAGCAAGGAAGGATCCATGATAGAATGCGAGGAAGGTTGCAAGATGATGAGAGGAGAAACTCAAAAGATCGATTAATGGGGAGAGAACTAATAGGTGGTGATAGGAGTGATTTTGCTGGGCCAAAAAGTCTGGCAGAGCTTAAAAATGGGAGGAACCCTGAAAATAGGGAACCACAACCACTGGGAAAGAGAGGAACTTTAAGAGATGATCACCCACAGTCTGAAGATGATCTTCAGTTTGATGGTCCAAAGCCTCTCAGTGAAATTTTGAAGGAGAAGAAAAGAGGAGGACCTGGAGGCAGAGCTGATGCAGACTCGGGGAATGGCAAATCATCTAATATTAAAAATGAAGAAGTTACCAATGGCTCAGATCCTACCCAGGTCACGAACACACAAAACGGTGTGCTGTCTGAGATCAAGGAATATGTCAACAATCAAAATAATGAAGAATCCAAGGTTGAGGTCACTGATGCAGTTGGAGGAGAGACTGGTGCAACTGATGGTCAATACGAGGAGGGAATATACGATGAAGCCGGTGAAGATCAGTATTACGAAGGTGATGATCAGAGAGAAGGAGATTATGAGTATGAACAAGGTGATGAGGGTTACTACGAGTATGAACAAGGTGAAGAGGGTGAAAATCAGGAGGAAGAGTACATGGATGAAGAAGATGGGGATGATTTTGCTAAGAAGATTGGTGTCATTCATTCATAAGCGTGGAAATTCTGAGAAAAAAGGGAGCGTGTCCTACTCATGATCAAGTCTCATACAGGTCTCTCTCTCTCTCTCTCTCTCTCTGACTGGGCAGCATTTCTGCTTAAAATTTGGTTGTAGAACTCAGAACAGCTATCACTATCAGTTTGTTTTCTTGTATTAATTAGTCCTTTTTACTCTTACTGTATTTTCATCAAATTTAATGGATATTTTTATGTGATCAGTGGGGCATTTTGCTGTGCTCTCCGCATATAAATGTCGTGCAGAGTGGTGCAGGCCTTTAACCTTAGAAAGTTAATAACATTTGCATTCACGTGCTAGTTTTATCATAT