Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_04437	LG1	61621848	61622687	hypothetical protein	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	positive regulation of response to salt stress, response to ethylene, positive regulation of response to salt stress, regulation of plant-type cell wall organization or biogenesis, response to ethylene, response to ethylene, regulation of developmental process, response to ethylene
Cellular Component	is active in	nucleus
Cellular Component	located in	nucleus, nucleus, nucleus, nucleus, nucleus
Molecular Function	enables	DNA binding, sequence-specific double-stranded DNA binding, cis-regulatory region sequence-specific DNA binding, cis-regulatory region sequence-specific DNA binding, cis-regulatory region sequence-specific DNA binding, cis-regulatory region sequence-specific DNA binding, sequence-specific DNA binding, protein binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity

SNP	Position	Effect	Amino acid change
G/T	61622198	missense_variant	p.Glu117Asp

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_04437.1

MDDDVLNMPNWGYYEPFRGGHLGLQLMPGMTDRDTKPYLPARDPAVLMGANGTFHPRDCVVSEAPMPLNYVRDNWTSQRDRYFSMQQPTNPNYAVLPETSVAPNLQIIQPPDTSRDEKVDRIEELVVKKEGGQSKKRQTKGALTTPKAKKPRKPKDNGNVPVQRVKPPKKTMELVINGIDMDISGLPIPVCSCTGSPQQCYRWGCGGWQSACCTTNVSIYPLPMSMKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLKTHWARHGTNKFVTIR*

CDS Sequence:
>Vu_04437.1

ATGGATGATGATGTGTTGAACATGCCCAATTGGGGTTATTATGAACCCTTCAGAGGGGGACATCTTGGTCTGCAGCTCATGCCTGGTATGACTGATCGAGACACCAAGCCATATCTGCCTGCTCGTGATCCAGCTGTGTTAATGGGTGCTAATGGAACTTTTCACCCTAGAGATTGCGTTGTTTCCGAAGCACCAATGCCGTTGAACTATGTCAGAGATAATTGGACAAGCCAAAGGGATAGGTATTTCAGTATGCAGCAGCCCACAAATCCTAATTATGCTGTTCTTCCTGAAACATCAGTAGCTCCCAACTTGCAAATTATACAACCACCCGATACATCCAGAGATGAGAAAGTGGATAGAATTGAAGAGTTAGTTGTCAAAAAGGAAGGTGGTCAGTCGAAGAAAAGGCAGACTAAGGGTGCTCTGACGACCCCAAAAGCTAAGAAACCTAGGAAGCCGAAGGATAATGGCAATGTTCCAGTTCAACGTGTGAAGCCCCCGAAGAAGACTATGGAGCTTGTAATTAATGGAATTGATATGGACATTTCTGGTCTGCCCATTCCTGTTTGTTCGTGTACCGGGAGTCCTCAGCAGTGTTACCGTTGGGGTTGTGGAGGTTGGCAATCGGCCTGTTGCACCACAAATGTGTCGATATATCCTTTGCCAATGAGCATGAAAAGGCGTGGTGCTAGGATAGCTGGGAGGAAAATGAGCCAAGGTGCGTTTAAAAAGGTTTTAGAGAAACTTGCGGCTGAAGGATATAATTTTGCTAACCCTATTGATCTGAAGACTCATTGGGCGAGACATGGCACCAACAAGTTTGTTACTATCAGGTAG

Promoter Sequence:
>Vu_04437::LG1:61619848-61621848(+)

CATAAAATAAAATTTGTGTAGCTATCTTATTTAAATAGTATTTCGTCAACAACAAAAACTATATTTAACAAAAATAGTATGTAATTTACTTCTCAAATAGGGAGATAAGAGGATCATTGAAAAAAAAAAGTGTTATATTTAAAAAAATGTGTTAAGAAATATACTGTTTTCTAAATACACACATTTGCTATTTGTTCTTTTAGATTGTGACTATGTTCTTTCCTCGCAACCCTTACATTTCCCTTATTTTGCCATTGTTATTTCACACCTCTTATCTTTCTTGTGCATTTCTTTTTTCCTCTCAATTGTTCATGTAATTTTTTGTTTAGGGTTTTCTCCCATTTGTGCCCTACTAATTTTATTTGCCAGTTATTTTTCTTCTTAATTTGCTAAAAGTGTGTTTCAATTTTCAATATTATAATTTTTTTTATATTGATCTTTTGGCTAAGGTTTAAGATGACTAGTACGATCTATCTCGTTCATATTGTTATTGCTTGATTCCTATTTAGTTTATTTAATTTGAAATTGATTAGAGTTATAATTTACTTTTGGGCGTACTTTTCCGGAGACTTTTTCTCTTGATTTTCTATAGTTGATTGCTGTTTTTCTTTTGTATTTGATTTCCCTTATATATGTTTGTGGAAATGCCTCAACTAAATTCTATTAAATATAACAAAAACACTACTTTATTTTTTCTTTTACCTTTTTAGTTTGTTTTTCTCGTACGTGTGATTAAAAATGACTAAAAGAAACTGAGAATTTAGTGAAATATAAGTTAAAACGAAACATGTTTTGGTTTGTTTCTTTTTATGCTATAGTATGCTTTTTGATGAGTTGTGGAAAAATGGATTATCTTGTAATAAAACGATGATGATTCATCCATAAAAGGCATTGAGATTGACATGAGATAGAGAGTTAGACGTTGAATGGATTGAGACAATGTGGCACGAAGAAGGCAACTTCTAAACAAAGCCCAACATTGTTTTTCTCCAATTTATGTTGTCCACATCGCCTTTCTCCGAAATTTTAAAACCCTCTTTCTGTATGCGTGCTTACCGCACCTCCCAAAACTCAAAAGTAAGTTATATACATAGGTATAAATGAATTTTGGACTTTCAAATTTCTATTAATATTAATATATTATTTATTTTATTTTTCTAATTTAGAAGGGGGCGTGGCAAAGTATATTATATATGCCCATACATACCCTATTTTTTAGCACTCTTTCTCTCTCTCCATTCCTATTGCGACTCTCTTCTCTCTCCTCTCTCTTCGCCTTTCTCTTTCTCTCTCTTTCAGATTTCTGTCTCTCTCATCTTTCTCTCTCCGGAAGGGCAAACCCTAAAGACCGTTTGCACCCACCAAGTAAGTTTTCTCTCTCCTATCTCCTCTTTCTCTCTCTTTCTCTCTTTCTTTCCGCTTTCTCTCTCTCCCTCTCTTTCCTTAAAAATTTGAATATGGGTCCTCCTTCTACCGTTCAGTCTCTGCCTCAATATAAATCATTTGTTGTGTGAATTTGTTTTTCTTCGTCATTATTACAAGCCAGATCTGTTCCCAAATTTTGGAACCCTAAAATGGGAATTGGGGATCTTCAAGCCGCGCTCCTCTTTTTTGTGTGTTCTCTGTGGTTTATGGAAAAATGTAGAAATGATGATGGCGTTCGGATCGTGGGGTTTTCGTTTTGCGGCGATTAGATCGAGCAAGTTCCGATTTTTTAAAGCGGAAGCGGTAAATCTGGATTTGTTTGGGCCTGATTTGATTTTGGTGTTGGTAATCTAAGACGTTTTTGTTTTTGTTGAGTTTGGGATTTTGGGTTGCTGGTATTTTATTTTCTCGTTTTTGAATTAATTTGCATGCGTTGGAGTTTTATTCTTTTGTTATGCTTTTGGTTCATGGTATGTTGCCTTGTTTGAGATTGTAATGATGGGCATTGATAGAAGAAGCATGAGGCATGTTTTGAAACTTTATGATCCTTTGTTTCCTGTTGTGTGTAGTTGCCA

Gene Sequence:

>Vu_04437(+)