Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_04544 LG1 63641365 63645902 PREDICTED: two-component response regulator ARR11-like isoform X1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of salicylic acid mediated signaling pathway, regulation of jasmonic acid mediated signaling pathway, regulation of root meristem growth, cytokinin-activated signaling pathway, regulation of abscisic acid-activated signaling pathway, regulation of abscisic acid-activated signaling pathway, regulation of abscisic acid-activated signaling pathway, regulation of root meristem growth, regulation of salicylic acid mediated signaling pathway, regulation of root meristem growth, cytokinin-activated signaling pathway, regulation of abscisic acid-activated signaling pathway, cytokinin-activated signaling pathway, cytokinin-activated signaling pathway, regulation of abscisic acid-activated signaling pathway, cytokinin-activated signaling pathway, regulation of jasmonic acid mediated signaling pathway, regulation of root meristem growth, cytokinin-activated signaling pathway, regulation of root meristem growth, regulation of root meristem growth, regulation of jasmonic acid mediated signaling pathway, regulation of root meristem growth, regulation of salicylic acid mediated signaling pathway, regulation of root meristem growth, cytokinin-activated signaling pathway, response to cytokinin, regulation of salicylic acid mediated signaling pathway, regulation of jasmonic acid mediated signaling pathway, response to cytokinin, regulation of jasmonic acid mediated signaling pathway, regulation of root meristem growth, cytokinin-activated signaling pathway
Cellular Component   located in   nucleus, cytoplasm, nucleus
Molecular Function   enables   phosphorelay response regulator activity, DNA binding, protein binding, DNA-binding transcription factor activity, protein binding, phosphorelay response regulator activity, DNA-binding transcription factor activity
SNP Position Effect Amino acid change
C/T 63641429 3_prime_UTR_variant
G/T 63641801 missense_variant p.Pro520Thr
T/A 63641985 synonymous_variant p.Ser458Ser
A/C 63641993 missense_variant p.Leu456Val
C/A 63641994 synonymous_variant p.Pro455Pro
A/G 63642219 synonymous_variant p.Gly380Gly
G/T 63642363 synonymous_variant p.Ile332Ile
A/G 63642378 synonymous_variant p.Gly327Gly
T/A 63642438 synonymous_variant p.Ile307Ile
C/G 63642446 missense_variant p.Val305Leu
A/T 63642481 missense_variant p.Phe293Tyr
G/A 63642497 missense_variant p.Pro288Ser
A/G 63642509 missense_variant p.Ser284Pro
A/T 63642595 splice_region_variant&intron_variant
A/T 63642602 intron_variant
A/G 63642719 intron_variant
T/G 63642728 intron_variant
G/C 63642729 intron_variant
T/C 63643040 intron_variant
C/A 63643234 intron_variant
G/C 63643237 intron_variant
T/A 63643281 intron_variant
T/A 63643617 stop_gained p.Arg142*
C/A 63643805 intron_variant
G/T 63643861 splice_region_variant&intron_variant
C/T 63644266 intron_variant
T/A 63644282 intron_variant
A/T 63644294 intron_variant
A/T 63644309 intron_variant
A/C 63644391 intron_variant
C/T 63644395 intron_variant
T/A 63644411 intron_variant
A/G 63644512 intron_variant
T/C 63644530 intron_variant
A/T 63644561 intron_variant
C/A 63644744 intron_variant
A/G 63644747 intron_variant
T/A 63644838 intron_variant
A/G 63645150 intron_variant
T/C 63645220 intron_variant
C/T 63645225 intron_variant
C/A 63645295 intron_variant
G/T 63645551 intron_variant
T/G 63645599 intron_variant
A/G 63645677 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_04544.1
MTLLSKSMDNGCFSSPRHEAFPAGLRVLVVDDDPTWLRILEKMLKKCLYEVTTCCLATEALKKLRERKDAYDIVISDVNMPDMDGFKLLEQVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRMHEARDFESHEGFEALHLLMNGSDQSDDGNIFAVEEITSIKKRKDADSKHDDKEFGDHSPTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMSVPWLTRENVASHLQKYRLYLSRLQKENDQKSSSSGVKHSDSSSKDPGSFSFLNTASNKQQSDVVIDSFSHSDGSLLQMDAPSHEGDLKRILSEPTTEKRRSSPKSSQMSLNQPFSSVESSEASHAIFDCTIQTQYSWGEFPKGPLKEEQKTTVQLEDSFSQLPLHGTRHHIQVDQSQSIASINSNPSITEEEVAPSLDTKTLYAGYKSDYVSPLSSMGTVVDTFPKQSKSLIPNDQSPEPIFTSNLGLKTDGFDVDCISDLDFYQRNLLLCGDAASAPLEEDLNFFLLQTEWYNMNFGQQNIDISECYDPRLVAEAPGYFYDSADYSSVDQSLFIA*


CDS Sequence:
>Vu_04544.1
ATGACTCTTCTCTCCAAAAGCATGGACAATGGTTGCTTCTCTTCGCCACGCCATGAGGCTTTTCCAGCTGGTCTGCGAGTTCTTGTTGTTGATGATGATCCAACATGGTTGAGGATCCTTGAAAAGATGCTCAAGAAGTGTTTGTATGAAGTGACTACATGTTGTTTAGCAACAGAGGCTCTGAAAAAACTTCGAGAAAGGAAAGATGCATATGACATAGTGATCAGCGATGTGAACATGCCTGACATGGATGGCTTCAAACTTCTTGAGCAAGTTGGACTTGAGATGGATCTTCCTGTCATCATGATGTCTGTTGATGGAGAAACCAGTAGAGTAATGAAAGGTGTCCAACATGGTGCATGTGATTATCTCCTCAAGCCTATAAGGATGAAAGAACTGAGAAACATATGGCAGCACGTCTTTAGAAAAAGGATGCATGAAGCGAGAGATTTTGAAAGCCATGAGGGTTTTGAGGCCCTTCACTTGCTGATGAATGGATCAGATCAGTCCGATGATGGTAACATCTTTGCCGTAGAAGAAATTACCTCAATAAAGAAAAGAAAAGATGCAGATAGCAAGCACGATGACAAAGAATTTGGAGATCATTCTCCCACAAAGAAAGCTAGGGTAGTTTGGTCTGTGGATCTTCACCAGAAATTTGTCAAAGCCGTGAATCAAATTGGATTTGATAAAGTTGGTCCCAAGAAAATTCTTGATTTGATGAGTGTTCCCTGGTTAACCAGAGAAAATGTTGCTAGTCACTTGCAGAAATACAGGCTCTACTTGAGTAGGTTGCAAAAGGAAAATGATCAGAAATCTTCGTCAAGTGGAGTAAAGCATTCGGATTCTTCTTCAAAAGATCCAGGAAGTTTTAGTTTTCTAAACACTGCAAGCAACAAGCAACAAAGTGATGTTGTCATAGACAGCTTCAGTCATTCAGATGGAAGTTTACTACAGATGGATGCTCCAAGTCATGAAGGTGACCTCAAGAGAATCTTGTCAGAGCCTACAACCGAAAAAAGAAGATCTTCACCAAAAAGTTCACAGATGAGCCTCAATCAACCTTTTTCATCTGTAGAATCATCAGAAGCAAGCCATGCAATATTTGATTGCACCATACAAACACAGTACTCTTGGGGTGAGTTTCCAAAAGGACCACTCAAAGAAGAACAGAAGACAACTGTTCAATTAGAGGATAGCTTCAGCCAGTTGCCATTACACGGTACACGGCATCACATTCAGGTTGATCAATCACAATCGATTGCTTCGATTAATTCTAATCCTTCTATAACAGAAGAAGAGGTTGCTCCCAGCTTAGACACCAAAACTTTATATGCTGGTTACAAGAGTGATTATGTGAGTCCGTTGAGTTCAATGGGAACTGTAGTTGACACCTTTCCTAAACAGTCCAAAAGCCTCATCCCTAATGATCAATCTCCAGAGCCCATTTTCACCTCAAATTTGGGATTGAAAACTGATGGATTTGATGTTGATTGCATTTCTGATCTGGATTTTTATCAAAGGAATCTATTATTGTGTGGTGATGCAGCTTCTGCACCTTTGGAAGAGGACCTGAATTTCTTTTTGCTGCAAACTGAATGGTACAACATGAATTTTGGGCAGCAGAATATAGATATATCAGAATGTTATGATCCAAGGCTTGTTGCTGAAGCCCCTGGCTACTTTTATGATTCTGCAGATTATTCATCCGTAGACCAAAGTCTATTCATAGCATGA


Promoter Sequence:
>Vu_04544::LG1:63645902-63647902(-)
TTTTTATTTTTTAACATAAATTTGATTTGATTTTTTTTTGTTTTTGAATAACATATTTCATGGCAAATAATAGATAAATTTTGGACCGCTAAAAATACATAATAATGTTTAGGGTAAATTTATGGAAAAAAACTAACTCTTACATCCATTTTTTTCCTTAAAAGAAATTTGTAATTTTTAACTCGTATAATTATCACATTAATAGTAACATCATAATAGATTCTTTTATAACTTAGATGTATATTATTTAAAATATTGTTTTAAAAAATTTTAAACAAATATCTTTTTGGAGACTATCAATCATATTATTTTTCTTTAATATAAATTATATTTAGGCTCTCACAAAGGGTAAGTGATTTTTGTTATACATATTCAGCACAAAATCAAATTGATTATTCTCTTAACGTGTGATCAACTCAATCATCTTATCTCAATTTCATAGCGTGTTTCATAAATATTATTCCTTTATAATATTACAAAATTCTAAAAATGTTCTTTAGCTTTGCATCTAACATTTAAGAATGTTTCTTATATTTTCTTCAATCTTAAAATCCCATTAAAATAGATCAACACGTTAAATGACACTTTTTTCTTGAACACTATGTACAAGCTAACCAAAAAGAAAAATTAAATAGAAATAAACAATTTTTTTCATCTACATCAATTTGTGGTTCATATAAAAAATAGAAACCTAAAATAAGTGAATTTTTTTTAAAAAAATTATTTTGATAAGTTTTCTTATAAAATAGATTAGGAAGTGTTGATAAAAATGTATTGGGTTGTCTAACCATATTCTCTTGTCTCTGGAATGCATTCCACGTGCCTTTCTACAAACGGTTTATCTTCTTATTTTTCGTTTTCACAAAGATACTACTAAGCAGACAAACACAGAGGTGATGTCGTCTTTATGCATACTTCTTGTCCCCTTTTCTATTAAATTCCTTTTTCCAAAAACATCACTGCTTCATGCTTCCTTTCTTCACTCTCTTCAACCTCATCATCAACAAATTCAAAACAGCTAAGTTTTTCATAACAAGGGAAAACAATTTTTCATTTTAATATATAATATATATGTTTATTAAAAAAAAAGTAAAATTAGTTTATACAAGTTACTCTAGTGCTTTCATCTAAGGTTTAAACATATATCTTTCACAAATTGTCTTAATATTTTTTATTTTATTTTTATCTCTAAATTTGTTTTCAAAACACTTTAAACTATCAAATAAAAACATGGGTAATAGGCTAAAGAAAAATAACTAAAAAAACATTAAAAATGAAAAAGTAAAAAAAAAAATTGAAATCAAAGTTTAAATAGTTAAGTTCCTCATTTAACCTTTTGAAAAAGCAGATTTTAACATGAATAAACTTTTTTTCGTGAAAAGGTATTTCTCACTTTTATATTATTTTCCTTTAACAATATTTTATAGAAAACAAAAACTTTTTAACAAAAAAAAATTTATACAGACACTTTTTATTTTGGCTCCATTTTGCAGCACAAATTATTTTTTTATTCCGTCTCTTAAAAGTTTGATTCTGTCTTCTTCCCTTGGATATGACATTTTGATATTTGAACAAATCTTCTGATACTTTTTTTTTTCAATCTGAACATGGCAATGCAAAACCAACCCAATGTTCTCTTCTTAGTCCATTTCTAAATTTGGCATTTTTACAGAAAAATTAATCTCATTCTCACCATTCATTCATATCCTCTTTACCCTCTTAAACTCAAAACAACTTCCTTGTTCCTATTATACACTATTCTCTTCATAACAAAAATTGGAAGATCATAACCCAAAGGCCGCATGAGCTAATGTGCGCCACTGGGACCGTTAATATTCGTCAGTGCTTTTTTGTCACAGTGCATGAAAATTTATACACACACACACACACACACACACACACACACATATATATATATATATATATATATATATATATATATGTATATACCTGTATAATATATACATACACACACATATATTCCCTTCACCTCAAATTTT


Gene Sequence:
>Vu_04544(-)
AATTTAAACCCAAAGAAGGCAAACCCATTTTTTTCTTGAACTGAGAAGCAGTGATCCTTATGACTCTTCTCTCCAAAAGCATGGACAATGGTTGCTTCTCTTCGCCACGCCATGAGGCTTTTCCAGCTGGTCTGCGAGTTCTTGTTGTTGATGATGATCCAACATGGTTGAGGATCCTTGAAAAGATGCTCAAGAAGTGTTTGTATGAAGGTTGGTTTGTTTTACTCATCATCAGTGCTAATTATTATGTTACCCTTTTGTTTCTCCACTCTGCTACTGTTGTTGTGGCGTTGATTTGTTGCAAAAAAGGGCTTTGACATCTATAAGCTGGATGTGATTGGATAAACTTCTCTGTAACAAACTTTTGGAAGAGAAACATAACAAGGAATAAAAGTAACTTCTCTCTAAGCTAAAATTTGTTAGTTCTTAAGTTAATTTGTATAAATTTAACCATATAAGCTCTCTAAATTTTATTTTTTAACGTTTTGATAAGCTGGTTTTAACTTGTGAAGAAACTCATTTCCTATTTTTTAGAGCTTGTGTTACGCTATTTGTCTTCTATAGCTGGATTCTGGTTTTTTACTTGCTGCATCTGAATCTTTAGTCTGTGATGGGATGTGTTCATGCTGAGCTATATTTGATAGTTGCATGCGTCTCAGTAGTGTTTTGTTTGGTCCGTTTAATTCGTTTGTTTATAATTTTGAACTGAAGTGTTTCTCAGAGTACGAAGCTGTTTTTTTTATTCCATTTTTTAGTAAGAAAAAAGTTGGGAAATTTGGATGATAGAACTTATCAAGATTGAAGGGGCTTAATCAAAAGTATCTGGGTTTGTATGTTGCCAAGAGGCTTCTGCAACACATGGATCCCTGTTATACCAATTGATTTTGAGATAAAATCTAACCTGATAGACTATTTATTAACTCATCTCAGGAATCACCAATTCTATTATGATAGGTTCGCCTATTAATCTGAACAAACAAAACTTTGTGTACACTTTCTGTGGCGTTCTGAAATGCCCAATATGTCACTACTTAGTTTAACACGACAATGGAAACACTTAGTTGAGTTCAAATTTTCCTGTTTCTATATGGTGGTAGGTAGAGAAGAGTTTAAGCCTTCTGCTAACTTCTGTTCGTTATGCATCTTTTTGCACTTTGGGTTCAATTTATTTGCACAAAGTTGAGCTGAGCTTCAACTATTAGTCTCAGTAATTAAAGAATAGAAATCAAGAATAAGGTTTCTTCTTAATTGATGCCATGATGTTTATTGAAAGATGGCATATTAATGAACCCAAGTTACCAATATGAGGCAATTTGAATTGCCACAGTTAAGCAAAAGAACTCATTGGCATTTACATACTTTATATGTCACAAATAAAAACCCACGCAAGTTGAAATATAATCCAACCAGTTATGTGACTCCACATAGAAAGAATGATTTAGAAGCCCTGTCCAACCAGAGATGTGACTCCATACTGAAGGAATGATTTAGAAGTCATACGAGTGTTGGTCTAAATGTCAATGGTATCAGTAAAAGCTTTCATAACATGGACAGTTCTTTTTTTTTTTTTACATTATTTAAGTCAAGTACTCTTGCAGTTTATGGAATTAGATTGGATTGAGCTATGCAAAAGCTCGAGCTCAACGATTTGTAAATGTAACATAAGGTCTTTCATGTATTTAATTCATTCGACATCTTTAGTAACTTTGAAATTCAAATCCTCCTCCGACCTCTTTATAATAATTTCTTGTTACTCTGTTCATACAAATTTTCATGAAATTAGCAAATTTTGGAAGCAAGCACATCTTGTGTCCATTGTGAGTGCTCTGGTTAGGACAACAATTACTTATTTTCTTCTGACTCAGTTATTATATGTTTCAGTGACTACATGTTGTTTAGCAACAGAGGCTCTGAAAAAACTTCGAGAAAGGAAAGATGCATATGACATAGTGATCAGCGATGTGAACATGCCTGACATGGATGGCTTCAAACTTCTTGAGCAAGTTGGACTTGAGATGGATCTTCCTGTCATCAGTCAGTTCTCTTTTAATTTTATATGTTAATATTTTTCATTAAGTGATATCAAGTAATCTTTTTGATCACATTGAGTTGAAGTCTATGCTGACAATAAGTAATCTTTTGATCACATTTGGAAATGCTGTACAGTGATGTCTGTTGATGGAGAAACCAGTAGAGTAATGAAAGGTGTCCAACATGGTGCATGTGATTATCTCCTCAAGCCTATAAGGATGAAAGAACTGAGAAACATATGGCAGCACGTCTTTAGAAAAAGGATGCATGAAGCGAGAGATTTTGAAAGCCATGAGGGTTTTGAGGCCCTTCACTTGCTGATGAATGGATCAGATCAGTCCGATGATGGTAACATCTTTGCCGTAGAAGAAATTACCTCAATAAAGAAAAGAAAAGATGCAGATAGCAAGCACGATGACAAAGAATTTGGAGATCATTCTCCCACAAAGAAAGCTAGGGTAGTTTGGTCTGTGGATCTTCACCAGAAATTTGTCAAAGCCGTGAATCAAATTGGATTTGATAGTAAGTTTTCTATCAACCTTCCCAGCTAAGTGTAATTATGAATTATGACTTAGGTAAACAACACTGTAATTTCTGACCTTACTCTTTTTGTTAATATGACAAAAACCTTCTTCTCGTTTATGTACAAGAACGTAACATATAATTTATGTTTGGCAGAAGTTGGTCCCAAGAAAATTCTTGATTTGATGAGTGTTCCCTGGTTAACCAGAGAAAATGTTGCTAGTCACTTGCAGGTATATCACTTGCTCATATGCATTGCATAAGTGATACTATATTAACAGTCCTCAGCTATTATCATTGAAAGAGTGCAAAATAGGACACTTCAGTCATAACATTACTGTCAATAAACATCTGGGTATCTTAATACTCCATATTGTGCTAAAGTCATGACAGGAATTGTCTTTAAGATACTGTTTAGTTGGAGGGGAAAAATAATGAAGAGTGGAGGAATTTTGATAAAATTTCCATGTTTGGTTCAGAGGTTTGGAGGGGTGGGGAACGAAAATCTCTCCTCAACAACCTTTTCTGACCCTACAAAGTTTGGAATACTTGATTTTCCCTCCTCTTCCTTCCCCTTCTCTGAACCAAACAGTATGCATTTATTAAAGTCAGAAATAATACAACGAAGATTCAGATCCCCCTCATAAAATTAAATGTGAAGACTCGAGAGAAATAAGAGGGAGAAAACTGTTAATGGTCTTTAAGTTTGTAGTTTGAAATTCATAGGGTTCCTTGATGAGAAAAAAATTTATCCTGCAGAAATACAGGCTCTACTTGAGTAGGTTGCAAAAGGAAAATGATCAGAAATCTTCGTCAAGTGGAGTAAAGCATTCGGATTCTTCTTCAAAAGATCCAGGAAGTTTTAGTTTTCTAAACACTGCAAGCAACAAGCAACAAAGTGATGTTGTCATAGACAGCTTCAGTCATTCAGATGGAAGTTTACTACAGATGGATGCTCCAAGTCATGAAGGTGACCTCAAGAGAATCTTGTCAGAGCCTACAACCGAAAAAAGAAGATCTTCACCAAAAAGTTCACAGATGAGCCTCAATCAACCTTTTTCATCTGTAGAATCATCAGAAGCAAGCCATGCAATATTTGATTGCACCATACAAACACAGTACTCTTGGGGTGAGTTTCCAAAAGGACCACTCAAAGAAGAACAGAAGACAACTGTTCAATTAGAGGATAGCTTCAGCCAGTTGCCATTACACGGTACACGGCATCACATTCAGGTTGATCAATCACAATCGATTGCTTCGATTAATTCTAATCCTTCTATAACAGAAGAAGAGGTTGCTCCCAGCTTAGACACCAAAACTTTATATGCTGGTTACAAGAGTGATTATGTGAGTCCGTTGAGTTCAATGGGAACTGTAGTTGACACCTTTCCTAAACAGTCCAAAAGCCTCATCCCTAATGATCAATCTCCAGAGCCCATTTTCACCTCAAATTTGGGATTGAAAACTGATGGATTTGATGTTGATTGCATTTCTGATCTGGATTTTTATCAAAGGAATCTATTATTGTGTGGTGATGCAGCTTCTGCACCTTTGGAAGAGGACCTGAATTTCTTTTTGCTGCAAACTGAATGGTACAACATGAATTTTGGGCAGCAGAATATAGATATATCAGAATGTTATGATCCAAGGCTTGTTGCTGAAGCCCCTGGCTACTTTTATGATTCTGCAGATTATTCATCCGTAGACCAAAGTCTATTCATAGCATGATTGATCCTGCCCTGCCCTTTTCTGCATCTTCAACAAAAATCCAACTAAATGCACGAAAGGAAGATTTACTGTTGCTACTTGACTTTTATTTTTCCTTTCCAAGAATATCAACTTTAGGGGGCTCGGGTATTCTTTTTCCAATCAGAAAGGATTTTGATATTGGAGCACAGATAAAAGTGGGTGATGTGTGATGACAAACATTAAGCTTATCAATAAGCTTGCTTCCTTTTAAATAATAAATGATTATTCAGAGAAGC