Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_04679 LG1 66505724 66507168 hypothetical protein GOBAR_AA07769
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   negative regulation of gibberellic acid mediated signaling pathway, regulation of seed dormancy process, regulation of reactive oxygen species metabolic process, meiotic cytokinesis, response to abscisic acid, positive regulation of gibberellic acid mediated signaling pathway, negative regulation of gibberellic acid mediated signaling pathway, meiotic cytokinesis, jasmonic acid mediated signaling pathway, regulation of seed germination, response to ethylene, jasmonic acid mediated signaling pathway, salicylic acid mediated signaling pathway, negative regulation of gibberellic acid mediated signaling pathway, regulation of reactive oxygen species metabolic process, regulation of transcription, DNA-templated, regulation of seed dormancy process, regulation of seed germination, negative regulation of gibberellic acid mediated signaling pathway, positive regulation of gibberellic acid mediated signaling pathway, response to abscisic acid, negative regulation of gibberellic acid mediated signaling pathway, regulation of seed dormancy process, regulation of seed dormancy process, regulation of transcription, DNA-templated, jasmonic acid mediated signaling pathway, regulation of seed dormancy process, response to ethylene, hyperosmotic salinity response, jasmonic acid mediated signaling pathway, gibberellic acid mediated signaling pathway, positive regulation of nucleic acid-templated transcription, regulation of transcription, DNA-templated, salicylic acid mediated signaling pathway, hyperosmotic salinity response, response to ethylene, negative regulation of seed germination, hyperosmotic salinity response, salicylic acid mediated signaling pathway, positive regulation of gibberellic acid mediated signaling pathway, regulation of seed dormancy process, positive regulation of nucleic acid-templated transcription, phloem transport, response to abscisic acid, response to gibberellin, salicylic acid mediated signaling pathway, hyperosmotic salinity response, negative regulation of gibberellic acid mediated signaling pathway, negative regulation of gibberellic acid mediated signaling pathway, jasmonic acid mediated signaling pathway, negative regulation of gibberellic acid mediated signaling pathway, response to gibberellin, positive regulation of gibberellic acid mediated signaling pathway, negative regulation of gibberellic acid mediated signaling pathway, response to salt stress, regulation of seed dormancy process, regulation of seed dormancy process, negative regulation of seed germination, jasmonic acid mediated signaling pathway, regulation of seed dormancy process, gibberellic acid homeostasis, regulation of seed germination, gibberellic acid mediated signaling pathway, positive regulation of gibberellic acid mediated signaling pathway, positive regulation of nucleic acid-templated transcription, jasmonic acid mediated signaling pathway, regulation of nitrogen utilization, response to abscisic acid, negative regulation of gibberellic acid mediated signaling pathway, negative regulation of gibberellic acid mediated signaling pathway, salicylic acid mediated signaling pathway, positive regulation of nucleic acid-templated transcription, negative regulation of gibberellic acid mediated signaling pathway, regulation of reactive oxygen species metabolic process, negative regulation of gibberellic acid mediated signaling pathway, salicylic acid mediated signaling pathway, response to salt stress, negative regulation of seed germination, negative regulation of gibberellic acid mediated signaling pathway, meiotic cytokinesis, gibberellic acid mediated signaling pathway, negative regulation of gibberellic acid mediated signaling pathway, negative regulation of seed germination, regulation of reactive oxygen species metabolic process, jasmonic acid mediated signaling pathway, regulation of seed dormancy process, regulation of seed germination, regulation of transcription, DNA-templated, response to ethylene, regulation of seed dormancy process, regulation of seed dormancy process, response to far red light, gibberellic acid mediated signaling pathway
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, DNA-binding transcription factor activity, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, transcription cis-regulatory region binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, DNA-binding transcription factor activity, protein binding, protein binding, protein binding, protein binding, sequence-specific DNA binding, DNA-binding transcription factor activity, protein binding, protein binding, protein binding, DNA-binding transcription factor activity, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, DNA-binding transcription factor activity, protein binding, protein binding, transcription coactivator activity, protein binding, transcription cis-regulatory region binding
Pathway   B 09132 Signal transduction   C 04075 Plant hormone signal transduction [PATH:ko04075]
SNP Position Effect Amino acid change
G/C 66505775 missense_variant p.Gly18Arg
T/C 66505786 synonymous_variant p.Ser21Ser
G/T 66505814 stop_gained p.Gly31*
C/A 66506046 downstream_gene_variant
T/C 66506054 splice_region_variant&intron_variant
C/T 66506137 missense_variant p.Ser65Phe
T/C 66506138 synonymous_variant p.Ser65Ser
A/T 66506620 missense_variant p.Gln198His
G/A 66507082 stop_gained p.Trp291*

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_04679.1
MKRECEQLGSSAGNSSCGYSSDKSNIWDEEGGMDELLAVDLKAIPGKAIYDRGVSTTPNAKRRKSTKSTRAFLVVDSQKNGILHVHSLMACAEAVENNNLVVPESLVKQTGFLAHSIPDSLEIHFYETCPYTKFALFTANQAIQEAFQGKSHVHVIDFGINQGMQWPTLLQALGLRPGGPLTFRLIGIGPPAADNSDQLQEVGWKLAQLAETIHVRIEYHGFGAIDPLSINSVGDSDSDRVEWHETLNQWQNRFSSTGFCPVRLNSNAFKQASMLLALFAGGDGYRVEENSGCLMLGWHTRALIATFAWQLATKSVVAL*


CDS Sequence:
>Vu_04679.1
ATGAAGAGGGAGTGCGAACAGCTTGGTTCCAGCGCAGGGAACTCAAGCTGCGGGTACTCGAGTGACAAATCGAACATTTGGGACGAGGAAGGAGGCATGGACGAACTTCTGGCGGTGGATCTCAAGGCTATTCCAGGGAAAGCAATTTACGACAGAGGTGTTAGCACCACGCCAAATGCTAAGCGTCGCAAATCTACCAAGTCAACGCGTGCTTTTCTGGTTGTTGACTCACAGAAGAACGGGATCCTTCACGTGCACAGTCTCATGGCGTGCGCGGAGGCCGTAGAAAACAACAACCTCGTCGTCCCGGAGTCGTTGGTGAAGCAGACCGGATTCCTCGCGCACTCAATCCCAGACTCTCTCGAGATTCACTTCTATGAAACCTGTCCTTACACCAAGTTCGCACTCTTCACCGCGAACCAAGCTATTCAGGAAGCGTTCCAAGGGAAGAGCCACGTTCACGTCATAGATTTCGGAATCAACCAGGGGATGCAGTGGCCAACACTGTTGCAGGCTCTCGGCCTTCGTCCCGGCGGTCCTCTCACTTTCCGGCTCATCGGAATCGGGCCTCCAGCAGCGGATAACTCTGACCAACTCCAGGAGGTCGGATGGAAGCTCGCACAGTTGGCAGAGACGATTCACGTGCGGATTGAGTACCACGGCTTTGGCGCCATCGATCCGTTGTCCATAAATTCGGTCGGAGATTCTGACAGTGATCGCGTGGAATGGCACGAGACCCTTAACCAGTGGCAGAACCGGTTCAGTTCGACAGGGTTTTGTCCGGTTCGTTTGAATTCCAACGCGTTCAAGCAGGCTAGCATGTTGCTCGCTCTTTTTGCTGGTGGGGATGGGTATAGGGTGGAGGAGAACAGTGGGTGTCTCATGCTGGGATGGCACACAAGGGCCTTGATTGCCACTTTCGCGTGGCAACTCGCAACGAAATCGGTGGTTGCACTCTGA


Promoter Sequence:
>Vu_04679::LG1:66503724-66505724(+)
TTCCAAGTTAAACGATCTTTTATTTTTTAAAGAAAGTTCTTACAAATACTACAGTAGAAGTTATTTTGAATATCACGTTACAAAGCTCATATTTCAAGTCGAGCTTCTAAGCCTTTAAAAGAATATTTTACATTGTCAACAACGTGTTATATCAGAAAGGTTGTGAAAAACATTTTTCATAAACATTATTCAACTCCTCCCTTATAGTGTTTCTTAGGTACTTCACGTATAACTTGTGTTATATTTGAAAAGATAATGTTGCAAGTGGTGGTTCAAATGCATAGTAGCAAGGAGCTTAGGGATTGCTTTGAGAATGCAATTTCTTTTATTTCGAATTATTTTGAATAAATTTTAATTATTGACTATTTTTAAGTATTTTTTATTATTTGAAATAAATTTTATTGAGTGGAAGATTTATAAAATTTATTTGATGAAATAAATGAACGTTATAATTTTATTTTATGATTCAAAATAAATACATTTAGAATATGTGTGAAACTTTTCTATGTTTTAGTAACACATAATAGGTGATATATCATTTGAGTTGATGATTAAAATTGTCTAGCCTTAAGCTCTAAAGACCTAAAAATAAGTTGATTATACACTTTTCTAGCCTTACTCTCTAAAGAACTAAAGGTTAGGGGTTGTGTGATGATAAGCCCAAAGCACTATGCTCAATACCAATGGAGTTAGTTATTCATGAGAAGATGGTTTAGATTTTACCTATAATAACCTAATGGTTAATTAAAAGGTCAAATGGGAAAAATGAGACATTAAAATCTGAAACAAAAAGAATTTAAAAGAAAGAGAAAACTCAAAAGACCACAAGAAATGAAGATAAAGAGAGATTTAGAAACAAAAAACAATGATATAAGATCTTTAAATGGTGTTGAATTTTTACGTTTTAGCTAAGAAAAAAAAATCAAAGAAAACCACAAAAAATGTGTCATTTGGATTGTGTCACAAGGTTGTATGGAGTTTCATCGGTGATATGGAATAGCATGCTTATGTAAACTAGAAATTACAATTAACATAGTAGAATTGAAAAAGGAATTGAAAAAAAGAAGCGAAAGATAAAGAATAAGAAAACTTATGGAGAAAGGTTGTCATACCACTTAGAAAAGATAAGTGGAAGGATTGACACGTGTTTTACCACAAGATAAGATTTGAAAATTGAAATTAAGAGATAATTGTTATCTTTAAGAAGTAATGCAATGGAATACAAAATACTTTTTATTTCATTTATTACTGTGTGTACACAGGGGAGCTAGAAATTGCTTTAAATAGCTTTAAGATAGGAAGAATGGTAAATGAGCTAAGGAATGTGAGACTAAGATGCATGAAGCAACTCAAGTACACAGCAAAGCAGCAACAAGTCTCACATCATTCCTTTCTTCATTTTTTTAAAGGTATATAAGCTACCATTCTCGTATCAAAATTAAAGTTAATAAGTTGTTGTCGTGAGATACAAGGCACAATATAAGGAAGATTTATTTATTCTTCTTTTCTTTTAATATCAAGCTATATGTTATGTCTCATATTATTTGTATTTTGGAAAAGAAGAAGGATATATAAACTTTTTACACTTAAAAGAGAAAAAAAACGACCAACACCACTGAGGATAGAAATAAGTCAAAAAATATATATACTACTCTTTTTTGACAAACAAATAAAGAAATCATGAGATGAGATGATTCCTTAAGTAATGTTTTGTGTAACTTATTATCTTCGTATATGATCACTGGTATGAAGTCTCCTCACAAGTTCCTTGCTCTCTGTTTTGTTAAATAATATTTTTACTCTTTAAAAATATTAAAAAAGTATTGTACTTAGACACATATTCAATTTATATTGTTTTTTCTATATATTTAAAAAAAATTGACTAATTGATATTTGGGGCTTGTCATGTGTTAAGTGGAGGATATACAGTTGTTACAGTTGTGGTAGCAAAAGTCACCAAAGAGAATAGAGAGAAAGAAATTGTTGGGCGAAGATAGGGA


Gene Sequence:
>Vu_04679(+)
ATGAAGAGGGAGTGCGAACAGCTTGGTTCCAGCGCAGGGAACTCAAGCTGCGGGTACTCGAGTGACAAATCGAACATTTGGGACGAGGAAGGAGGCATGGACGAACTTCTGGCGGTGGTGGGTTAGAAGGTGAGATCTTTCGACATGGCGGAAATCGTGCAGAAGTTGGAGCGTCTTGAAGAAGCCATGGGAAACATTCAAGACGATCTCAAGGAACTTTCAGATGGCGCCGCGCACTATAACCCCTCTGATATCTCCAACTGTCGAGACCATGCTCTGCAATTTCGACTTGCTTCCTCCAGAAGAACCAGATAAGGGCTACCCCTCTTCTGACTAGGATCTCAAGGCTATTCCAGGGAAAGCAATTTACGACAGAGGTGTTAGCACCACGCCAAATGCTAAGCGTCGCAAATCTACCAAGTCAACGCGTGCTTTTCTGGTTGTTGACTCACAGAAGAACGGGATCCTTCACGTGCACAGTCTCATGGCGTGCGCGGAGGCCGTAGAAAACAACAACCTCGTCGTCCCGGAGTCGTTGGTGAAGCAGACCGGATTCCTCGCGGTGTGGTTGGAGCTATGCAGAAAGTCACCACCTACTTTACGGAAGTGCTCACATGGCGAATCTATCGCATTTTCCCTCTCCAGCACTCAATCCCAGACTCTCTCGAGATTCACTTCTATGAAACCTGTCCTTACACCAAGTTCGCACTCTTCACCGCGAACCAAGCTATTCAGGAAGCGTTCCAAGGGAAGAGCCACGTTCACGTCATAGATTTCGGAATCAACCAGGGGATGCAGTGGCCAACACTGTTGCAGGCTCTCGGCCTTCGTCCCGGCGGTCCTCTCACTTTCCGGCTCATCGGAATCGGGCCTCCAGCAGCGGATAACTCTGACCAACTCCAGGAGGTCGGATGGAAGCTCGCACAGTTGGCAGAGACGATTCACGTGCGGATTGAGTACCACGGCTTTGGCGCCATCGATCCGTTGTCCATAAATTCGGTCGGAGATTCTGACAGTGGTGGAGCAAGAATCGAATCATAATGGACTGAGGTTTCTTGACCGCTTCATTGAGTCGCTACACTATTATTCAACTTTGTTCGACCCGGTGGAGGGCTCGCCTGTGTGAATCCAGAGAATAAGGCGATGACGGAGGTTTACCTAGGAAATAAATATGTAACGTGGTGGCTTGCGAGGGAATAGATCGCGTGGAATGGCACGAGACCCTTAACCAGTGGCAGAACCGGTTCAGTTCGACAGGGTTTTGTCCGGTTCGTTTGAATTCCAACGCGTTCAAGCAGGCTAGCATGTTGCTCGCTCTTTTTGCTGGTGGGGATGGGTATAGGGTGGAGGAGAACAGTGGGTGTCTCATGCTGGGATGGCACACAAGGGCCTTGATTGCCACTTTCGCGTGGCAACTCGCAACGAAATCGGTGGTTGCACTCTGA