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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_04746 LG1 67896345 67898044 PREDICTED: protein ODORANT1-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   cuticle pattern formation, cell morphogenesis, cuticle pattern formation, regulation of cutin biosynthetic process, regulation of cutin biosynthetic process, cell morphogenesis
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
T/G 67896415 missense_variant p.Glu333Asp
C/T 67896423 missense_variant p.Gly331Arg
T/C 67897409 intron_variant
T/A 67897410 intron_variant
G/T 67897550 intron_variant
T/A 67897687 intron_variant
T/G 67897696 intron_variant
T/C 67897905 splice_region_variant&intron_variant
A/G 67897931 synonymous_variant p.Arg38Arg

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_04746.1
MGRSPCCEKVGLKKGPWTPEEDKKLMAYIEEFGHGSWRALPSKAAYRWSAIAAQLPKRTDNEIKNYWNTHLKKRLTRMGIDPTTHKPKTDALGGSGGCQSKDAANLSHMAQWESARLEAEARLVRESRLQVQSNLGPGSNTQPARLVLNKITTQQPSLPPCLDILKAWQSSWSKPQPPTKESNPKMMHSMYAMMLSTEDTLESPTSTLCFPGTTPTMLPVSNNNNIGVLFNENNDMFPLPSTNMDGGLMKENTVLHLQDDDIMAAVEAFRATTTMYDSNNNVVPPTLHNGVVLEGLNNDEGLVYDSNDNLGAEEENMAMMNGDGSLCNVNLEENNKHYWNNIFNLVNDPLSGPSVF*


CDS Sequence:
>Vu_04746.1
ATGGGTAGGTCACCATGCTGTGAAAAAGTGGGCTTGAAGAAAGGCCCTTGGACTCCTGAGGAGGACAAAAAGCTCATGGCTTACATAGAAGAGTTCGGCCACGGAAGCTGGCGTGCCTTGCCTTCAAAAGCTGCATATAGATGGTCAGCTATAGCGGCTCAACTTCCGAAGAGAACCGACAATGAGATAAAGAACTACTGGAACACACACCTGAAGAAAAGGTTAACAAGAATGGGGATAGACCCCACCACCCACAAGCCCAAAACCGATGCGCTTGGTGGCTCCGGTGGTTGCCAATCCAAGGACGCAGCGAACCTCAGCCACATGGCGCAGTGGGAGAGTGCTCGTCTCGAAGCGGAAGCAAGACTGGTGAGAGAGTCAAGGTTGCAAGTCCAGAGCAACCTGGGACCCGGCTCCAACACACAACCCGCGAGGCTGGTCCTCAACAAAATTACTACGCAACAACCCTCTCTACCACCCTGCCTCGACATCCTCAAAGCATGGCAAAGCTCATGGTCGAAGCCACAACCACCAACAAAAGAAAGTAACCCCAAAATGATGCATAGCATGTACGCCATGATGCTATCCACCGAAGACACTCTAGAGTCACCAACCTCCACGTTGTGCTTTCCAGGAACGACACCAACCATGCTTCCTGTATCCAACAATAACAACATTGGAGTACTGTTCAACGAAAACAACGACATGTTTCCTCTCCCAAGCACAAACATGGATGGTGGGTTGATGAAAGAGAACACGGTGTTACATTTGCAAGACGATGATATTATGGCGGCTGTGGAAGCATTTAGAGCCACTACTACAATGTACGACAGCAACAATAATGTTGTTCCTCCCACACTCCACAACGGTGTTGTCCTCGAAGGACTCAACAATGATGAAGGGTTGGTTTATGACTCCAACGATAACTTGGGAGCGGAGGAAGAGAACATGGCAATGATGAACGGGGATGGAAGCCTCTGCAACGTGAACCTGGAAGAGAATAACAAGCATTACTGGAATAACATATTTAATTTGGTGAATGATCCCTTGTCTGGTCCCTCTGTCTTCTGA


Promoter Sequence:
>Vu_04746::LG1:67898044-67900044(-)
TATATTTGAATCTAAATGGACAATTCATCGGCTCTATTTGACTGGTCAATAACATTTGTTTATAGCAGGTTGGTTTCTTTAATTCATGAAAAATTATTTCGGGAAAATGTTTTCTTACAATGTTATTTGATCAAGTTAAAAAAGAGCTCTCTTTTATGTTACATAGTTTGTGATGATTGTCGAATTTAAACTACTTTTTAAGGATTGAATTTTCTAAATGGAAGAATTTTTTTTTTCAATGTTTCGTAAAATAAACTCTTCAATCTTATATTAGTACAATCAAACCCATCTCATATAAGTTATTATACATTTTTTTTTGTCGATAGAATAGATAAATTCTTCACCAATACCAAAAAGTAAAACTTTTTTAAAAAAATAATATTTTTACTACTTTATATAATATATTATTTTACAATTTTATTATAATAAAATAAATATTGGAATTAACAAAGAAAATGAATGATATTTACAAATAATAAATCTTTTATACCAAACTTTGAATTGATACGAAAAATTCCTTTTAACATTTATTATAAATTACAATTCATGTAAAAATTGCATGCAGGAAAGAAGAATGTGAGCCCTCTTAAACATCTATGGATAAGCATTTCCTACATGTTTTTACACTTATTTTGCAACCCAAATTAATTGTCATTCATATTTTCAAAAGCTACATGCCATTCTTGGAAAGCAGCTTAGCATTGTTGATCACCATGCATTTAGAGGACATTCATTCATTGTTCTAATATCCTACCAAACTTTGTTTGGACAACATGATGCTCAACTTCCATGTAAGTGATGGTAACAAACATCTTAAACAAGATGCGAAAATTATTTCTTTGACAAAGATCTTTCTCAATAAAGAGTGAGTGAGAAAACATGGGTACAATAGATTCATGCATTGTCTTCACAGCCGTCAAAGGCATCATAAGAACTGACAACAACAATGTTGTGATAATATACCCAACAACTGCGAAACGATAAGGGTGGTTGACAACAACAAAGGTTTTATAAGAGTGTTTTGGTGATCATAACGACAACAAAATATGTAATGCTACACATTTACGTTTACATTAAGTTGTTCACACATTATTTGACAAATATAGCTTTCACTGCTGTTTGGTAATTGTTGATTCCACTTCTCTTCTTTCTACACATAAATTTCAATTATGCTACCCCAAGTGTTTGCACCTATGACCACATATCATTTATCTCACTTGCATCAGAGTTAGAAAAATTAGAACATGGAATATTAAAGACATTTAGATGGGTTTATCTGGCATGAATAAACTGATTTGAAAAGTTAATAAAAGTATGTGGTTGCTCAAATAAAATTAAAACAAAAAGGTTATTCCAATTTATCTTGACTTGGTTGTGTCTGACCAAATTATTGTGTACTTACAAAGTACAGTACAAGTTTGAAAATGGTTCTAGAGGTAAAACAGTGTACAACTTAAAGTTATCACTGCTAAACGAAATAATATGTAGATTACTTTTTCCTAACTATCACTTAATTGTAATAATGTTCATCTTATAATATTAGTTTAAAAGATTTAAGAGTCCTACCTTAGGCATTAGTTTTGAAGAATAAAGTGATATCAGTAACAGATTACGTCCACGTGATATGTTGTGTCTGTAAATGTTTTGAATATATTAAAGAAAAGATGATGTAAATATAAAAAAAAAAAAAAGAGAGAAAAAGAGAGTAAAAGAAAAAGAAAATGAGAAAATATATTAGGCCTCGTTACTCTGACTATCCCTTTCCCACGCAGGTGTCTAAAATTAAGATACGGAACCTCACTCACAAATACACGTACTGCATCATAACTACTTGCACAGTGATTTGTGATGTTTATCCCTCTATATATAACGTTCTTTTCTTACCCTTCTCCTTGAACTTGCTTACTTTGCTTGTGGTCTTTTCTCTCTTTCTCTTGTTCTCTGCACCAAACCTTCCAAAACCGCTAACTCAAACGTTTCAGTATTGGTCCACAGCACCA


Gene Sequence:
>Vu_04746(-)
ATGGGTAGGTCACCATGCTGTGAAAAAGTGGGCTTGAAGAAAGGCCCTTGGACTCCTGAGGAGGACAAAAAGCTCATGGCTTACATAGAAGAGTTCGGCCACGGAAGCTGGCGTGCCTTGCCTTCAAAAGCTGGTACTTACTGCCACACAACACAACACAACACAATACACAACCTTTCTTTTTCTCTCTTGTTCTTTTCTTTATGGGGTGTGTGTTAATAGCTTCTTGCTTTTCACGTACTAAACTCTAGGCCTTCAAAGATGTGGGAAGAGCTGCAGACTGAGGTGGACTAACTACCTTCGACCCGACATTAAAAGAGGAAAGTTCAGCTTGCAGGAAGAGCAAACAATCATTCAACTCCATGCCCTTCTTGGGAACAGGTGAGCAAACCAAATCACTGGTAGAGAAGTGGTAGATGTGATAGACCCATAAACCAAAAATAACAAACCAAAGGACCCTTCCTATTCCCACTTTATTATTCATTATAAATGACCCCCATAGCTAGGAATGTTAACTTGCATACAATCATTTTTAGTATCCCCTTATATTTTACTAACAACATCATCCCATTTCCATTTATAAACCAACAACAAACTTACATTTTTTTATTGATGTTTTTCACATTTTTCTCATAAGAATTCAAGATTTCCATTCCATGCTGTCCCAGATTACTATTGGAGAACAGTATTTGTAACTGTATGTATAGACTATTATATAATGTCCATTGCTAATGGCTGTTTTTGTGCTGAATATTTTTGGAGCATATAGATGGTCAGCTATAGCGGCTCAACTTCCGAAGAGAACCGACAATGAGATAAAGAACTACTGGAACACACACCTGAAGAAAAGGTTAACAAGAATGGGGATAGACCCCACCACCCACAAGCCCAAAACCGATGCGCTTGGTGGCTCCGGTGGTTGCCAATCCAAGGACGCAGCGAACCTCAGCCACATGGCGCAGTGGGAGAGTGCTCGTCTCGAAGCGGAAGCAAGACTGGTGAGAGAGTCAAGGTTGCAAGTCCAGAGCAACCTGGGACCCGGCTCCAACACACAACCCGCGAGGCTGGTCCTCAACAAAATTACTACGCAACAACCCTCTCTACCACCCTGCCTCGACATCCTCAAAGCATGGCAAAGCTCATGGTCGAAGCCACAACCACCAACAAAAGAAAGTAACCCCAAAATGATGCATAGCATGTACGCCATGATGCTATCCACCGAAGACACTCTAGAGTCACCAACCTCCACGTTGTGCTTTCCAGGAACGACACCAACCATGCTTCCTGTATCCAACAATAACAACATTGGAGTACTGTTCAACGAAAACAACGACATGTTTCCTCTCCCAAGCACAAACATGGATGGTGGGTTGATGAAAGAGAACACGGTGTTACATTTGCAAGACGATGATATTATGGCGGCTGTGGAAGCATTTAGAGCCACTACTACAATGTACGACAGCAACAATAATGTTGTTCCTCCCACACTCCACAACGGTGTTGTCCTCGAAGGACTCAACAATGATGAAGGGTTGGTTTATGACTCCAACGATAACTTGGGAGCGGAGGAAGAGAACATGGCAATGATGAACGGGGATGGAAGCCTCTGCAACGTGAACCTGGAAGAGAATAACAAGCATTACTGGAATAACATATTTAATTTGGTGAATGATCCCTTGTCTGGTCCCTCTGTCTTCTGA

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This project is funded by the Department of Biotechnology
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