Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_04766	LG1	68437757	68438137	hypothetical protein	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	protein-containing complex assembly, seed development, response to red or far red light, cellular lipid metabolic process, seed development, response to light intensity, cellular lipid metabolic process, cellular lipid metabolic process, seed development, protein-containing complex assembly, seed development
Cellular Component	located in	mitochondrion, chloroplast, chloroplast envelope, chloroplast, chloroplast, chloroplast envelope, chloroplast, chloroplast envelope
Molecular Function	enables	ABC-type transporter activity, ATPase-coupled transmembrane transporter activity

SNP	Position	Effect	Amino acid change
C/T	68437775	synonymous_variant	p.Leu7Leu
C/T	68437911	missense_variant	p.Pro52Leu
G/T	68438011	missense_variant	p.Met85Ile

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_04766.1

MASIRSLSLSRSLSSSTSSPLPALLSLDNDHDDTQENDSDDAEAPPTGKVTPVTIRWRNINCCLSDKSSKNVSGGARPGRLLAIMGPSGSGKTTLLNVLVGQLTASPRLHLSGVLEFSGKPASKNA*

CDS Sequence:
>Vu_04766.1

ATGGCTTCGATCAGGTCGCTATCGCTCTCGCGGTCTCTTTCCTCATCCACGTCTTCTCCGCTCCCGGCCCTGCTCTCACTAGATAATGACCACGACGATACGCAGGAGAACGATTCTGACGATGCCGAAGCTCCTCCCACCGGAAAGGTCACACCAGTTACAATCAGATGGAGAAACATCAATTGCTGCCTTTCCGATAAATCCTCCAAAAACGTGAGTGGAGGAGCGAGGCCTGGAAGGTTATTAGCCATAATGGGACCTTCAGGTTCAGGGAAGACAACATTGCTTAATGTTCTTGTGGGTCAGCTCACAGCATCTCCTCGGTTGCATTTGAGTGGTGTTTTGGAGTTTAGTGGAAAGCCTGCTTCGAAGAACGCATAA

Promoter Sequence:
>Vu_04766::LG1:68435757-68437757(+)

ACATTTCTTACCCCTGCAAAGTGTTAATCCTCCATTCCATCTCCTTATTCCGGGACTATATCCAAGTGTTGAAAAGAATACCAAAGGAATCATCATCATCACAAGAAGTCACTCTCAACCACATCTGATGAAGTTTCCATTGATGTTGATATTATAATGGTAGATGCAACTTATAGAGTAAAACATGATGAAGGTAAAAGCAGCAATATTTATAATGAAGAAAGCACAAAGCATTAATGAAGAAGAAAGAAGATGAAGTGTAGGAAACGTACACCCAAAAGAGAAAGGAAGCACAGTAAATGGAAAGCTGAGAAATCCCTAGCACTGTTATCAGAGTAGCAGCGTGCATAAAAAGGGAAGAAGCAAACAGAGAAAAGGAAAGATAAAAGGAAGTGGGCTGGGCTTCCAAAACAGGCCCAATAGTAACAGCTTTCATCCCCCCTCAAGTTAGGAGTAGATATCAGTCATACCCAGCTTAGAATGGAGGTATTTAAACGTAGCTGCAGCAAGAGGTTTGGTGAAGAGGTCAGGAGCTTGTTGAGTGGTAGAAATGGGAAGCAACTTCAAGAGGCCATTATTGATCTTGTACCTTATAATGTAATAGTCTATCTCTATGTGCTTGGTGAGTTCATGAAACACCTGATTTAAAGCAATATGAATAGCAGAACGATTGTCACAATAGACAATAGCAGGCTGAATAATGGATATGTGAAGATCTTGAAGGAGATAGGTCAACAATTATAGTTCACAAGTGACAGTGGCTAGAGCCCGATATTCAGCTTCTGAAGAACTTCTAGAAACAATTTGTTGCTTTTTGGATTTCCAATAGATGATAGAATTACCGAAGTAGACGGAATATCCAGTAATGGATTTTTGGAATTCAGGACAGGTAGCCCAATCAGAATCACTATACGCTTTGAGCTGATTGATGCTTTTGTTCGGGAGGAATATGCCATTACCAGGACTGCCTTTGAGATATCGAAGGATGCGATTGGCAGGTTGTTGGTGTAGGGTGGTAGGAGCGAAGACAAACTGACTAAGATTGTTGACAGGAAAAGTCAATGATGTGGAAGAGATTATCAAGAGAAGTGACTTAACCAGCAATGGACTACACTACCCTACAGTGGCTGAAACTTTTCTTCCCCTCACGATTGAACATACGTCAATGACGTGAAGGTGAAAGAACGGGTGAGAATTGATCCGTACTTGGGGACAAATCTGAAACCCCTAACATCGAACGAGTCAAATCAGCGGGTGGTCTCATAGAACAACTCTCAGTGAGCTGTTACAACAAGGCATTGGTGGTGCAATGATCCTTTCACATGGCAAAAAGAACTGACTCAGTGGTGTCATGAGTGGACGTTTGCGATCCTCAAGATTCTGAACAGAATGATGGTGGAGACAGGCTTGGCCACAGGTGCCAGTGCATTTGGTGGCACAAGCGGCAGATACGACGACAAGAAGGACTGCCATTGTATATCAGTGAAACAAAGGGAAGAAGAAACACATTGGGTGTGGCAGAGAACCCTTCACATTGGTGAAGGCAGATAGCCCTTCTCAATGGAGAAGAAGATGATGGAAGCGGGAGAACTAGTACTAGGAGCCGGCACATCAGCGGCATCAGTAGTGGAGACAAAGCACTGTTGCTCGAGAAACAAAAACGAATTTAGTGAGAAAGGGAGAAACCTAGTGGTGGACCAGGAAAGGTCCTGGTCATGAAACGTGAGGCGAAACCCCTTACGGGAAAGTTGGAGGATGACGAAAGCGAAAGAGGATGATGTGAACTTGAGAAGAAGTCAAAGGGTCAAAAGAAGATCAGGAGAGTGAGGCGAACAGAAAGCCAGTGGCATAGTGATCTTCCGACCAGGGAAGGGCGACACGTGAACAATACACTCCACACTTGGTCTCACAGTGCATACTTCAGACGGAAGAGAAGAGACGCTAATGGTGGGTTTTGGCGGGAAAAAAATGCGCCAAATGGCTGTTGGTTTCGGCGGCAA

Gene Sequence:

>Vu_04766(+)