Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_04809 LG1 69300219 69303027 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   positive regulation of transcription, DNA-templated, cotyledon morphogenesis, positive regulation of transcription, DNA-templated, cotyledon morphogenesis, positive regulation of transcription, DNA-templated, cotyledon morphogenesis, primary root development, primary root development, cotyledon morphogenesis, leaf morphogenesis, leaf morphogenesis, positive regulation of transcription, DNA-templated, response to sucrose, cotyledon morphogenesis
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus
Molecular Function   enables   sequence-specific DNA binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, RNA polymerase II-specific, transcription cis-regulatory region binding, sequence-specific DNA binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
T/A 69300368 intron_variant
C/A 69300428 missense_variant p.Phe18Leu
A/T 69300620 intron_variant
C/T 69301039 stop_gained p.Arg194*
A/T 69301178 intron_variant
G/A 69301639 intron_variant
A/C 69301949 synonymous_variant p.Arg248Arg
G/T 69301950 missense_variant p.Arg248Ile
C/A 69301961 missense_variant p.Pro252Thr
A/T 69302215 intron_variant
T/G 69302220 intron_variant
G/T 69302371 intron_variant
C/G 69302379 intron_variant
A/T 69302380 intron_variant
T/C 69302383 intron_variant
A/G 69302457 intron_variant
G/C 69302474 intron_variant
G/C 69302476 intron_variant
A/T 69302480 intron_variant
G/A 69302485 intron_variant
A/G 69302492 intron_variant
G/A 69302533 intron_variant
G/T 69302547 intron_variant
C/T 69302549 intron_variant
G/C 69302553 intron_variant
C/T 69302557 intron_variant
G/A 69302565 intron_variant
G/T 69302569 intron_variant
G/T 69302571 intron_variant
T/C 69302580 intron_variant
A/T 69302582 intron_variant
C/T 69302590 intron_variant
C/T 69302591 intron_variant
A/G 69302606 intron_variant
T/C 69302644 intron_variant
T/G 69302654 intron_variant
C/T 69302807 intron_variant
G/A 69302813 intron_variant
G/C 69302815 intron_variant
A/G 69302819 intron_variant
T/C 69302828 intron_variant
G/A 69302835 intron_variant
A/T 69302869 intron_variant
G/C 69302887 splice_region_variant&intron_variant
G/A 69302906 synonymous_variant p.Lys303Lys
G/A 69302954 stop_gained p.Trp319*
G/C 69302980 missense_variant p.Arg328Pro
G/C 69302992 stop_lost p.Ter332Serext*?
G/A 69303000 missense_variant p.Gly335Arg
G/A 69303001 missense_variant p.Gly335Glu
C/T 69303009 stop_gained p.Arg338*
G/A 69303010 missense_variant p.Arg338Gln
A/C 69303013 missense_variant p.Glu339Ala
G/A 69303022 missense_variant p.Ser342Asn

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_04809.1
MWRIRDLSLVHNSSLQYHSAIEDQWQAQTSNDMAFFPANFMLQTPHQEDHQPPPSLNSIITSCAPQEYHGGASFLGKRSMSFSGIELGEEANAEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYEAIKADNDALQAQNQKLQTEILALKSREPTESINLNKETEGSSSNRSENSSEIKLDISRTPAIDSPLSTQQNSRNLFPSSTRPTGVAQLFQTASRPELQCQKIDHMVKEESLSNMFCGIDDQSDFKRERRQGDGKGGKKTRRVGNGHSREWDIVDFVVDDKGRSESGSV*


CDS Sequence:
>Vu_04809.1
ATGTGGCGCATTAGAGACCTTAGTCTTGTTCACAATAGTTCTCTCCAATATCATTCAGCTATTGAAGATCAGTGGCAGGCACAGACTAGCAATGATATGGCTTTCTTCCCAGCAAATTTCATGCTACAAACACCTCACCAGGAAGACCATCAACCTCCACCTTCACTCAACTCAATTATAACTTCATGTGCACCTCAAGAGTACCATGGAGGAGCATCCTTTCTAGGCAAGAGATCTATGTCATTTTCGGGAATTGAACTTGGAGAAGAAGCTAATGCCGAGGAGGACTTATCTGATGACGGATCACAAGCAGGAGAGAAGAAAAGGAGGCTTAACATGGAACAGGTGAAGACACTTGAGAAGAGCTTTGAGTTGGGAAACAAGCTTGAACCAGAGAGGAAAATGCAGCTGGCAAGGGCTCTTGGCTTGCAGCCTAGACAGATTGCTATATGGTTCCAGAACAGGAGAGCTAGGTGGAAGACCAAGCAGTTGGAGAAGGACTACGATCTTCTCAAAAGACAATATGAAGCTATCAAGGCAGATAATGATGCACTTCAAGCTCAGAACCAAAAACTTCAGACCGAGATATTGGCACTGAAAAGCAGAGAACCAACCGAATCCATCAACCTCAATAAAGAAACTGAGGGCTCCAGCAGCAATAGAAGTGAGAACAGCTCAGAAATCAAGTTGGATATCTCAAGAACCCCAGCTATTGACAGTCCTCTATCCACTCAGCAGAACAGCAGAAACCTCTTTCCATCTTCTACTAGACCAACAGGAGTTGCTCAGCTTTTCCAAACCGCTTCAAGGCCAGAACTTCAGTGCCAAAAGATTGATCATATGGTCAAAGAAGAGAGCTTAAGCAACATGTTCTGTGGCATTGATGATCAATCTGATTTCAAGAGAGAAAGAAGACAAGGAGATGGAAAGGGTGGGAAGAAAACAAGGAGAGTTGGAAATGGTCATTCTCGTGAATGGGACATTGTCGATTTTGTTGTTGATGACAAGGGAAGGAGCGAGAGTGGATCAGTGTAG


Promoter Sequence:
>Vu_04809::LG1:69298219-69300219(+)
CATGTTGATGTACATATTGTTGGGTACTGATTTCATCCCCATATGTATGAAAATTAGAAATTTCAGCAACCATCAACAGAAAAATTGTGCATGTGTGTCCTTCATTGTTTCGTGTGAAACCAATTCCCAAAATAAAAAAAAATTAATAGTATACACACTGTTCCAAAACACAACCACTGGCCAAGTCTCTCTAGCAACTTGTAGTGGTGGCACTGCAGTTTCCATCAGAGTCAATAAATGTTGTTGCCATGTAATTTCCTGAACCCTTATTTCTCTGTCTCTCTCTCTCACAGCCAACCCTAACATTTCTTATGCCTTGCCTTGCACCATAAGTCAAACCAACTTTTCTTTCAAAATGTCACCATATATGTTATCTCTCCAATGGTAATCCATGGTGATGATCTCTGTGATTGCATTTGCAGTTACACCAATCACAGTTTTGTCATTTCTTACAACAACAACATATATTACAGCAATACCGGACCACAACTTAAATTAAAACAAACAGATGGAGTCCTGGTTGACTTGTTTTAGCATGGTAAAATGTTGGACATATTGGCATGTAGTGGCCAGCAAATTAACTAGGGTTGCACTTCCACAAAGCATATGTATGGAAGAGAGAGAGAGATAAATATATTAAAGTCTTTTGGCTTTGCTGTAAGAGATTTGAGTTTTTAATTAGCGAAATGTATGTATGTATGTAATTTATATCCATTTGGGGGGATGTTGGGAGGAGTATTGAGAGAGGAGGCAGTGGCAATGTGGGAAGAAGATGGAGATATATACGGAAGGGAAAAGGACAAAAAAGAGGAGGTATGGTGGGGTCGTAATAATAATAAGAAGAAGAAGAAGGTAACAGGCTTAGCTTAGCTTGGCTTGGCTTTGGAAGCCTCATCACATAGGTATACACACACACAAAGACATCATCAGATAGGGGCTGGGTTGAAACTGATGCAATAAGGGATAATGGTTGATGCGAAAGAGCTTCGTCCTAATGCATGATACCTGTTGGTGGGTTAGGTGGCAAACCCTGCCCCTCTTCATTGGACCCATCCCCTAGATTCCTCCCACTTCTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTCTTAATTACCCTCCAACAAATACATTACGGTTAGACCAAAATAACACAAATTAACTTATGCAAAATTATATTCTTCTGAGAACTAAAATCTAAGAAACTTTCACATTACAATTAGCAACTACTTCACATTATTTATACTGATAGAAGATCATTAGGGACGTATCTTTTTTTAAGCTATAAATTCACCCACCTCAAATTAAACAAACGTATAATATGTGAATCTTCATTGCCTAGCTTCAGCAAAGGAATCATGGACATAGCCTCTATAGCGTAGCTACCGTTCCACTTCCTATAACTATATTTAAAGACAAGCTTTCTTTGTAAAGAAAAAACCCACTGCCTGTCTCCTAAGTGAGAAGCTAATTTATCATTAGGAAAATAATTGCAAGCAATGATCTTAACATGCACACACTCCAATGGAATATTAGACAGGTTGACGCAGAGAAGTTAGCTTTCTTTTTCTCCTTTCCAAAAATAATCCTTCTTTCTTTATTCTTTTTCCAAACGCTAAACGTCATTTTGACATCTGATATAGATATAAGTTTAAAAAGCCTGACTAATTGTTTTTTCCTTTCATGTACATGAAAAATAAACCCATTGAACTTTTTATTTTTATTTAACTGCAGCAACTTTAAATTCAATAAATATAATAAAAGAACCCAGTGATATATATTGAGGACGGTGTATGGAACTATAGATTCAAACATATCTCACCCCCTGTCCCTCTCTTCCTCTCTTCTTTCTTCTATCACCTTTTCCTTCCAACTTCCTTTTCCTTTTGAAATTATCACATAAGAAAACAAGAGCTCCCCCTTAAACTGATAAGGTATATAAGCCACCCTTCACAGCAATTTGTCCGTCTTCTTCAATTTATTGGCGGAAGA


Gene Sequence:
>Vu_04809(+)
ATGTGGCGCATTAGAGACCTTAGTCTTGTTCACAATAGTTCTCTCCGTAGAAGCTGATATGCTTTATAAGCCATCCTATTTAATTTAGCAGAAGGTGTTCTGTATTAGACCATATTCTTTATCTGTTGTTTGTTTCACAACGACACAGTTTATCCTTTGAGCATCAGCGATCTTCTCTTCTCATCCCACATGGTGATCAGAATATCATTCAGCTATTGAAGATCAGTGGCAGGCACAGACTAGCAATGATATGGCTTTCTTCCCAGCAAATTTCATGCTACAAACACCTCACCAGGAAGACCATCAACCTCCACCTTCACTCAACTCAATTATAACTTCATGTGCACCTCAAGAGTACCATGGTACTCACTTTAGACATAAACACGTACACCTATTAGTGCAATAATATGTTATGGAATTAATACCATGTTTCAAATGTTGATGCAGGAGGAGCATCCTTTCTAGGCAAGAGATCTATGTCATTTTCGGGAATTGAACTTGGAGAAGAAGCTAATGCCGAGGAGGACTTATCTGATGACGGATCACAAGCAGGAGAGAAGAAAAGGAGGCTTAACATGGAACAGGTGAAGACACTTGAGAAGAGCTTTGAGTTGGGAAACAAGCTTGAACCAGAGAGGAAAATGCAGCTGGCAAGGGCTCTTGGCTTGCAGCCTAGACAGATTGCTATATGGTTCCAGAACAGGAGAGCTAGGTGGAAGACCAAGCAGTTGGAGAAGGACTACGATCTTCTCAAAAGACAATATGAAGCTATCAAGGCAGATAATGATGCACTTCAAGCTCAGAACCAAAAACTTCAGACCGAGGTTAGCAATTTTCTCAAAACTTCTAAAAGTTTTTGTTATGTTTTAGCTTCAATTTTTTTAAAGATCCTTGTTATGTAAGAAGAGAACTTAGAAAGGAAGTTCGGTTTTTCTTAAATTCTACAGTCAAATTCAGATAATTTTCTTGACAAAATACTTACATGCAAAGATAATAAAACTATTTAAGAACATAAAATTGATTAAACATTTTATAGAAACTTTTTTTAGCTAACTTTTTCTGCTGTTGAGATGTATAAATTAACTTTTAACTTATGGGAAAAGGTCTATGTATTTTACCTCTTTATAGTTCATTTTTGTTTCTTTCTGCTATGTGCTTGCTGAGAAAATTATTGAAATTAATCCTAAATTGAAGAAGAAGTGGAGGGATGTCCAAGTTCTGCTATGTTCGATTGTTTTTATTTTTACAATAAAGCTAGGTAATCATGATCTTTTTCTTTTTGAAAAATTGTATATCGTGGCTTTCAGAACCTTTTTATGATAGCTTTCTGCAAAGATGCTTTTTCCAATCATCCACAGTAACTTCATGAAGACCAGATTCCACTCAATTACATGTTTGTCATGCAACGCATAGTTTCCTTGGTTTGGAAATAAACAATCATTTGGCTCCTTTTTGACATTGACACCTTGGTTTTAGACTGATTACACGTTTGATGCTTGAACCTTTCGTGCATGTTAACATTTGTGCTATTTTGAATTTGCTAATTTCACTGCTGCCACTCACTGCCGCAGATATTGGCACTGAAAAGCAGAGAACCAACCGAATCCATCAACCTCAATAAAGAAACTGAGGGCTCCAGCAGCAATAGAAGTGAGAACAGCTCAGAAATCAAGTTGGATATCTCAAGAACCCCAGCTATTGACAGTCCTCTATCCACTCAGCAGAACAGCAGAAACCTCTTTCCATCTTCTACTAGACCAACAGGAGTTGCTCAGCTTTTCCAAACCGCTTCAAGGCCAGAACTTCAGTGCCAAAAGATTGATCATATGGTCAAAGAAGAGAGCTTAAGCAACATGTTCTGTGGCATTGATGATCAATCTGGTCTTTGGCCTTGGTTGGAGCAGCAGCATTTCAATTGATCAAGCAGCAAAGAGAGGGTGAGAAAGTGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTTGAGATTGCAATGTAGTTTTCCCTTTTCCGGATGAAAACGAAATCATCGCGAGGGTGTCTGTGTCAATTGATTACCATACTTAATGAGTTATTACATTAAAACCCGTGTTTTGGTAAAAAATTGATATATAAATTAGGATATATCAAGTAGAATATTTCAGGTGGGGCTTGAAAATTTTACATAAAAAGAATAAAGACTTGGTCACCTTTTCTTTTTCAGTTAATAAAAATGACTAATTTTCTTGAAACTTTTGAGTAAAGGGTGGTGGAAAAAAATTCCAATTAACTGCGAGACCGTGCTTGTTGGTGTCTGATTGAGAGGCAATGGCAGAGGGGCCACTAAAGGGAGAGATTCTCTTTAAATTTTCCCCAATTTTTTAATCCAATTATAACTTTGCTTGCTTTTGAATCAAACCTTTGTACTGCTAAAGAATTTCATTTTGCATGTACTACGTACGAGAGTCTTTCTGGTGTCTATGTGTTGGCATAGACATTAAACGTGAGAGTTTCTTTTAATAAGAATTTAATTATGATGTATGAGGCTATAGAGGTTGTAAAATTTATTTATGTGATGATTTGTTTGATCCGTGATGAGTATAGCATAGCATATAGAAGGGTAATGGAATTTGAGAAAGTGGGTATTAAAAAAGAAAGGAATCAAACACAGATTTCAAGAGAGAAAGAAGACAAGGAGATGGAAAGGGTGGGAAGAAAACAAGGAGAGTTGGAAATGGTCATTCTCGTGAATGGGACATTGTCGATTTTGTTGTTGATGACAAGGGAAGGAGCGAGAGTGGATCAGTGTAG