Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_04843 LG1 69875243 69876713 PREDICTED: homeobox-leucine zipper protein HAT5-like
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Annotations  
category   relationship type   keyword
Biological Process   involved in   positive regulation of transcription, DNA-templated, regulation of cell growth, leaf morphogenesis, positive regulation of transcription, DNA-templated, leaf morphogenesis, response to salt stress, regulation of cell growth, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, negative regulation of translation, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, negative regulation of translation, regulation of cell growth, positive regulation of transcription, DNA-templated, response to blue light, regulation of cell growth, negative regulation of translation, negative regulation of translation, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, negative regulation of translation, response to salt stress
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus
Molecular Function   enables   DNA binding, DNA-binding transcription factor activity, RNA polymerase II-specific, sequence-specific DNA binding, protein binding, sequence-specific DNA binding, DNA-binding transcription factor activity, protein homodimerization activity, sequence-specific DNA binding
SNP Position Effect Amino acid change
A/T 69876181 intron_variant
A/G 69876347 synonymous_variant p.Gly196Gly
C/A 69876512 synonymous_variant p.Ile251Ile
T/C 69876638 synonymous_variant p.Tyr293Tyr

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_04843.1
MAGEKLNGGSRMTLLLQKERLPCSPEHIQTFWVQNSQPSFQGSKSLVNVVNVRDRPFFRGVEREENDDDEDFEVFPHQPGKKRRLTSEQVQFLESNFEMENKLEPERKVQLAKELGMQPRQVAIWFQNRRARFKTKQLENDYGMLKARFDILKRDYDNLVQENAKLKEEVYSLKKVIPREKEKQNLDDTSCDAVNSGHKEQKDLIINGGSENESKVALPVMVISKQKDANSAKSDVLDSESPHFTDGNQSSIFEPADSSHALEPDHSDFSQDEEDILSQNMPLLPKFEVEYVCYDEPPENPFTFRFPVEDQTFCFWSC*


CDS Sequence:
>Vu_04843.1
ATGGCTGGTGAGAAGCTGAATGGGGGTTCAAGAATGACGCTTCTACTCCAAAAAGAAAGGCTTCCATGCTCCCCTGAGCATATCCAAACCTTTTGGGTTCAAAACTCTCAACCTTCTTTCCAAGGCTCAAAATCCTTGGTTAATGTTGTGAATGTGAGGGATAGACCCTTCTTCCGAGGGGTTGAGAGAGAAGAAAACGATGATGATGAGGATTTTGAGGTATTCCCACATCAACCCGGTAAGAAAAGGAGGCTCACAAGCGAACAAGTTCAGTTCCTTGAAAGTAACTTCGAGATGGAAAACAAGCTTGAACCCGAAAGGAAAGTCCAACTTGCAAAGGAACTTGGCATGCAACCAAGGCAAGTGGCCATATGGTTCCAAAACCGTAGGGCAAGGTTCAAGACCAAACAGCTAGAAAATGACTATGGCATGCTGAAAGCTCGCTTTGACATTCTCAAAAGGGACTATGACAATCTCGTTCAAGAGAATGCCAAACTCAAGGAAGAGGTTTATTCTCTGAAGAAGGTGATTCCCAGAGAGAAAGAGAAACAGAATTTGGATGATACCAGCTGTGATGCTGTCAACTCAGGACATAAAGAGCAGAAGGATTTGATCATAAATGGAGGTTCTGAAAATGAATCCAAAGTGGCACTTCCTGTTATGGTAATAAGCAAACAGAAAGATGCTAATTCAGCTAAAAGTGACGTGCTTGATTCGGAGAGCCCACATTTCACTGATGGAAACCAATCCTCAATCTTTGAGCCTGCAGATTCCTCTCATGCTCTGGAACCAGACCACTCGGATTTCTCACAGGATGAGGAAGACATCCTCAGCCAAAACATGCCACTCCTACCAAAGTTTGAAGTTGAATATGTCTGCTATGATGAACCACCTGAAAATCCTTTCACGTTCCGGTTCCCAGTTGAAGATCAAACCTTCTGTTTTTGGTCTTGTTAA


Promoter Sequence:
>Vu_04843::LG1:69873243-69875243(+)
TTTATTACTATTCGATAGAAAAACGTCATTGCTCTCAACTGACTTTGGCATCGACGGAGGACCGGACGCACGGAGTACGAGTATAAGAAGACGTGGAGACATTGGACGACACATCCCTTCACATCCGAAACAAGTATATATTGTGTTGAATAATGGTTAGATCCAAGGAGCAGGTGAATTGAATCACAAAAGTCAATTTAAGAAAATCCTTTGAAGGGCAACACTGACTGTAAAAATGAAATGATCACAATATGGAAGTATATATTCTAGAAAGACTTCATCTAACCATGTCAAGCTTTGAATCCTACAATCATATATTCCAGTGAGACTTTATTCACAATGTTTCACCTAAAGATTACCTTTGTTTGGAGTTTTGGCAGTGAGAATTCCGGTCAAAGAGCCCTTTTTAGTGGTTTCTCTTGAAAGCTATATTTGGTCTTCTGCTATGTTTAAATTGGAACATTTCCTATTTAATTGATTCACTTTTCTTTATCCTAAGTCTGTCTTGTCCATACATAAACAAGCAATTTGATTCCAAGTCTATAAATTAGGCTTTAGAGTACTAGGATTATGAGCATAATGCAAACCTATTAACACGAATTTAACTACCTGAGCTACTCTTCAATTTTCATTATGATGTAATAAAATTAGATAAAAACTAATGGTGCAATTATAACATTAAGTTCTTGTTTTCATCAGCCTCTGGCGTTCGATCAAAGAAAAATGGAAGGAAAAGTTTCAACATGCAAGGCGTAATCGACATTTAGGTATTAGGTGTATATAATTACGTTTACCTTTCCAATATTGATTGAATGATTAATTAATGTGGACTTTTATCATGGAACCAAAGAGTACTGTTTGGGAGACATAATTGATCACAAAACAGGGGCCAAATCGGAGTATGACTAAGGACAATAGAAGATAAAGCAAGAAATAACCTTCGGTGTGAAGGCGGAGATGCTTCGGACGCTGGTACAACAATGACTTCAAGAGCGACGGCGGCCCTAAGAGTTCCGGTGAGACGGTTGCGCTGGTCCACAGCCTCACGACGGTGCGCTTGATGCTAGGGACTAGTAGGGAGCGATTCAGTGTGACGTGTGATGCGTTAAGGGTTTAAGAAGGCGAAACGCGGCAAAAGAACGATAAAAGAAGAGATATTTTTAGCATTACTTAAATTAATAAATAATTAAAATTTAATTATATTTCGTGCTATTTAAATAGGTAAATATTTGAGAACGAGGTTAACAAAACCGTGTTATTTGCATGCCTTTTAACAATTTGAATAATCTCAATTAAAAAAGTTACTTTAAAGAAAATATGAAAAAGGGAAAAAATATCTCTTTTCCTAAATATAAAAAAATAAGTGTATATAATAAAGTAGTTTTCTTAATTAAATGAATTGCTTAAAGAAGGAAAAAGACGTCTCTACTACCTTGATGGAACTGGTTTTTGAAGAAAGAAGATTCCAAGAAACAAAATGCAAAAAATAAAGTTGTGTGTGGTTGGAGGGGCCTAGTTTGTGAATGTTTCCCCAATCGCTTCACCATTCCATGACTCTCCATATAAACCCCATCATAGTTCCCCACTATCATCAACAGAATCTCCCTTTACATCACTTCTCAACTCAACACCAAATTTCCAACTCCCATCAACACACAGATAAAACTCTTGCTTCTCCCTCTCACCATGCTCTCTGTCTCTTTCAAAACATAGAAGAATGCACCACCCTTCGTCCTACAATTTTGATTCCTCTGTCTTTTATGGATATGATGCTCACTCCCCACTCTCACAATTCCCACGTCACATTCTTCACCACCACCTCCACCTTTCACCCTTCATTTTGATCAACATAAAGACCCTCATCCCTCTGCTCCTTCTATTCGCTATATTTGACTATGACCCTTTAGTTTAAATTCTATCAACAATCTACACCTAACAGTCTTGCAAGTTCTACCTATATATACTATTAACTCACCAAAAAGTTTCCATAAAGAAGGCCA


Gene Sequence:
>Vu_04843(+)
ATGGCTGGTGAGAAGCTGAATGGGGGTTCAAGAATGACGCTTCTACTCCAAAAAGAAAGGCTTCCATGCTCCCCTGAGCATATCCAAACCTTTTGGGTTCAAAACTCTCAACCTTCTTTCCAAGGTGATTTGCTATGACCATGTTGTTGGTTTCTTGATTATTGTCTCTGGCATGTGCCTTCATGAGCTCCTTGGAGTTGCTGATTTCTTTTGCTCATCAAAACTTCTAAACTTTTAGAAAGTATTTTTCTTAACAAAATCAGAATTGGGTTTCTTGTAGATACTGGTTTTCTTCTGATATAGAATCTTTCCCATATGAAACCAAGTTAAAAAAGATTTTTTTTTTTCACTGAAAACCGTTTATGTTTGAACTCTTTAGCTTGGTTATTATCCTTTCTGATGTTTGAATTCAGGCTCAAAATCCTTGGTTAATGTTGTGAATGTGAGGGATAGACCCTTCTTCCGAGGGGTTGAGAGAGAAGAAAACGATGATGATGAGGATTTTGAGGTATTCCCACATCAACCCGGTAAGAAAAGGAGGCTCACAAGCGAACAAGTTCAGTTCCTTGAAAGTAACTTCGAGATGGAAAACAAGCTTGAACCCGAAAGGAAAGTCCAACTTGCAAAGGAACTTGGCATGCAACCAAGGCAAGTGGCCATATGGTTCCAAAACCGTAGGGCAAGGTTCAAGACCAAACAGCTAGAAAATGACTATGGCATGCTGAAAGCTCGCTTTGACATTCTCAAAAGGGACTATGACAATCTCGTTCAAGAGAATGCCAAACTCAAGGAAGAGGTAACAATGGTTAGACATAAATAAAGTCATCCAGTTAACTTCTTTTTTGTGGTCTACCAATCAAAACTAGTGAATCTCAACAACTTGTGGTTTAGAAAAGATTCCACATAGTGTTTTCAACAATAATAACAAACACTCACTCAAAAAATCTTCTTCTGCTCTTTCTTTCCTCTGTATGAATTTAGTTCTTCAGTAGATTATCAGTTTAGTTTTTCCTTGTTACAGGTTTATTCTCTGAAGAAGGTGATTCCCAGAGAGAAAGAGAAACAGAATTTGGATGATACCAGCTGTGATGCTGTCAACTCAGGACATAAAGAGCAGAAGGATTTGATCATAAATGGAGGTTCTGAAAATGAATCCAAAGTGGCACTTCCTGTTATGGTAATAAGCAAACAGAAAGATGCTAATTCAGCTAAAAGTGACGTGCTTGATTCGGAGAGCCCACATTTCACTGATGGAAACCAATCCTCAATCTTTGAGCCTGCAGATTCCTCTCATGCTCTGGAACCAGACCACTCGGATTTCTCACAGGATGAGGAAGACATCCTCAGCCAAAACATGCCACTCCTACCAAAGTTTGAAGTTGAATATGTCTGCTATGATGAACCACCTGAAAATCCTTTCACGTTCCGGTTCCCAGTTGAAGATCAAACCTTCTGTTTTTGGTCTTGTTAA