Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_04988 LG1 72752306 72753598 PREDICTED: axial regulator YABBY 4
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   cell fate commitment, plant ovule development, plant ovule development, plant ovule development, cell fate commitment, polarity specification of adaxial/abaxial axis, plant ovule development, polarity specification of adaxial/abaxial axis, plant ovule development, plant ovule development, plant ovule development, plant ovule development
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus, nucleus
Molecular Function   enables   protein binding, protein binding, protein binding, protein binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding
SNP Position Effect Amino acid change
A/C 72752341 missense_variant p.Glu12Asp
T/C 72752442 intron_variant
C/T 72752482 intron_variant
C/T 72752490 intron_variant
A/C 72752736 intron_variant
A/T 72752910 intron_variant
T/G 72753039 intron_variant
A/T 72753042 intron_variant
G/T 72753084 intron_variant
A/T 72753284 intron_variant
C/T 72753527 intron_variant
T/G 72753529 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_04988.1
MSTLNHLFDLPEQICYVECGFCTTILMPNEGSSEDGAAKTLKNYSSSVVTYSDCEEENTPQTSSVVNKPPEKRQRTPSAYNCFIK*


CDS Sequence:
>Vu_04988.1
ATGTCAACACTGAACCATCTTTTCGATCTTCCAGAACAGATATGCTACGTAGAATGTGGATTCTGCACCACAATATTAATGCCAAACGAAGGTAGTTCAGAAGATGGTGCAGCCAAGACTTTGAAGAACTACAGTTCATCCGTAGTAACCTATTCTGATTGTGAGGAAGAGAACACGCCTCAAACTTCCAGCGTTGTGAATAAACCCCCAGAGAAGAGACAGAGGACACCATCTGCTTATAACTGCTTCATCAAGTAA


Promoter Sequence:
>Vu_04988::LG1:72750306-72752306(+)
TTTCGTTGCACTATAGAAGACCTATAGTTTACTTTTTATTTCTTTCTTTGAATTTTCTTTTACCAGCATTACCTCTTGAATAAATGAGAGTAATTATAGTTATTACTTTTTACCAATGATAAACATACATACTTAAAAAAAAAAACTATTATGACTTACTTAAAATAGTTGTGATTGTGAAACATTCTCATAAAATAAAATATATACCAAATATTTCTTCATTTTTATCTTATATACAAGTTCTACCTAAACTTATCCACGTTTACTTTGATTTAATATGTTATAGTATTAACACTTTATTAACCTTATAGGTGCATAAGAAAAATAATAACGTTAAAAATCTTATCTGACGAAAGAAATGCAAAATTAATTACTTTTTATTGCTATGGAAATGCATATCAATCACCAAGATAAAAAAACTAAACATAATAGATTGGCTACAATGGATCCATTCACGCCTAGGATATTCTTGAAATATTCACTTTTGACCTTTTTTTAGGTGTGGCTTGAAGTGGAGGAGAATCAAATGAAGAAGTAAAACTAAAGTTAAAGAAGAATAAAAATTTCAAACAAAAATATCAAGAAGGAAAAAGAAGTTTCAATAAAGATTTACTTAGAAAAATTTAAGGAAATGTGGGAAGAAATAAAGAGACAAAATAAAATGTAACTTGGTTAAAGATTATAAAATATTCTAAAAAAAATCAAACAATATTCTACAAATCTTAAAAGATTACATAATGTACATGTCACATCTTAAAAGATTACATAATGTACATGTTACTTTTAAGTGTATGCGAATGTTGAAATTATTTCACATGTTTTTTTTTCTATTTTTTAAGGGTCATTCATGTGCTAAATCAAACTTAAAAAGATAACTTTGTATATCAATCATAAGAGTAGTGAGACATTAAGTGTAATTATTAGTTTAGACATTATTGTTGGGAAAGTGTTCATACTAGGTGCTTTATTACTTACGATATTTTTTTCATGTGCTATTGTTTGAAACTCATTTTTAATCTATCTGGGCTCAACTAATCTTCAAAATGACACTATCTTGTAAGTTGCATTCAAAAGAAAGAAATATTATTTATTTGTGGATTTATTTGAGTATCTTGAGTATAAAACTATTTCTTTTAATTTTTATTTGTAAGAGTTTTCTTTCATCTGACTAATTTTTACTGTGCTTATATTCTAGGGTAAAATATATTTTTAATTTTTAACCTTTGATCCAAATTTAAATTTTGTCTCTATTTCAAATTTTGATATAATTTTATTTTTAAATTTAAAAAAAAAAATATAGTTATTCTAATCCAACTGTATTATTTTTTTACTTGTTAAACTTATTTTAGGACGACGTTTAAGTTATTTACATTAATTTAACAAGTTAACTCAATTGTTAAATTAAAATATCATTTAACAAACCCAACAAATATTTTTTTGTTAATTTAAAAAAAATTATATATACCTTAATCTTTAAAATTTGAAAATCAAAATATATCAAAATTTGAAATAGAATCGAATTTTAATTCGCATCTTAAAATAAAATATATTTAATTTTATATTTTGTTTTGAAGAGACTCATGTTTCTTGGGCAACTAGTTCTTATTTTCCACGATGAGTCACAAACTATATTTGTTCATTATTCATGAGTTTTGGTTTAGTTAACCATTGATTATTCCATCCACTTTTGAATAAAATATATAATTTGTCAAATTTAAATATCACCTTTAAATTAGAAATGATCATAAACGATCTTCTTATAAGGGAGTGACTGTAATTTTGGTCCTGAACCTCTAAATATCATGAAAGGTTCGTGGTACTTAGCGTGAATGTTGGAGTGCATTCCGGCAATAAAAATCACCATTTAAGTACCCCTACCTCAAATCATTAAAGGGAGAGAGAAATTATGACTTTCAGCTATAAATTCTTACTTGTGTACAGTGAGCTACATCTTCAATCTCTCTCTTTCTCAAACACTTCAAACACGTGCACGACAACCA


Gene Sequence:
>Vu_04988(+)
ATGTCAACACTGAACCATCTTTTCGATCTTCCAGAACAGATATGCTACGTAGAATGTGGATTCTGCACCACAATATTAATGGTAACGAGTTCTCTAAAGACCTTACCGATTGCTTTTAATTCTTCTTTTTCGTATTTCTGTTTCCAATTCAATGTTGTGAGGTGCAGGTAAGCGTCCCATGCAGCAGTTTATCAACGGTGGTGACAGTCAGATGCGGCCACTGCACAAGCCTTCTCTCTGTTAATATGAACAAAACTTCCTTTGTCCCTTTCCAGCTTCTTGCTTCTCTTTCTCATGTTGAGGTCATCTTCGTTACCTTTCAATTCTTTATTTCTAGAAGTAGCACAATGACCCACATATTTACCTTTTTAACTTCAAAAAAGTTGTCAAATTTTATGTTAGAATGTCTTGTAGCATCTAAGAAGAAACTAAAACTATAGGTAAAGAATGGGTTTTTTGTGCGCTTTTTATGTGCATATATGAAAACATGATGACATATGTCATTATTTTAGTTTGCAGTCAAACCTTATTTAGTAATAGGGAATGAAGAGAATGAGTGTCACCACCACCTGCAGCCACACTGTGTGACACGCCATTCAACCCAACGCCGGTCAGTCTTTGTCGGCGGCAATTTTACCTTCCGTATCTCACCTCCACCACATCTCGCCTCCGAAATAATAAATCATGAATATTAGAAGACAACTGAAATACTGAAAGCCAACAAAAAACTGGGTAAATCGCATTGGGTTGAATGGTGGGATAGACAGTATAATTGGAGGGTGGTGACACTTAATCTTTTCATCTCTTTCTATGACTCAGTCTTTTTTTTTACTTTCAACTAAAATAATGTCATCACATGTTTTCCTTATGTACATGTGAAATACCAAAATTCTTTTTTTTCTTAAAAAGGGAACCGAAGGAATGTCCAGAAATGAATAAAAAAAAATTTATGAAAATGAACATATTTAAACCTTATTTATAACTTCAAGGGGATTAAATTTGAATGCATTTGTGAATATTCTCATTCTGCAGCCAAACGAAGGTAGTTCAGAAGATGGTGCAGCCAAGACTTTGAAGAACTACAGTTCATCCGTAGTAACCTATTCTGATTGTGAGGAAGAGAACACGCCTCAAACTTCCAGCGTTGTGAATAAACGTACGTAAAAACTTTGATAAATATTACTAAGCTTGAAGCAAGTTTTGTTAATTTATTCATTTTTTCATGTTGGAATGTTTTCAGCCCCAGAGAAGAGACAGAGGACACCATCTGCTTATAACTGCTTCATCAAGTAA