Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_05111	LG1	75348539	75350122	disease resistance RPP13-like protein 4	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	defense response to fungus, signal transduction, defense response to fungus, defense response to fungus, defense response to bacterium, defense response to bacterium, response to inorganic substance, regulation of defense response, response to salicylic acid, defense response to bacterium
Cellular Component	located in	nucleus, plasma membrane, nucleus, nucleus
Molecular Function	enables	molecular_function

SNP	Position	Effect	Amino acid change
G/T	75348559	missense_variant	p.Gln522Lys
C/T	75348572	synonymous_variant	p.Arg517Arg
C/T	75348637	missense_variant	p.Gly496Arg
T/C	75348827	synonymous_variant	p.Gly432Gly
T/C	75348871	missense_variant	p.Ile418Val
A/T	75348926	synonymous_variant	p.Ser399Ser
T/C	75349216	missense_variant	p.Ser303Gly
G/A	75349240	missense_variant	p.Pro295Ser
C/G	75349246	missense_variant	p.Ala293Pro
G/C	75349276	missense_variant	p.Gln283Glu
T/C	75349281	missense_variant	p.Glu281Gly
G/C	75349347	missense_variant	p.Thr259Arg
T/G	75349374	missense_variant	p.Glu250Ala
C/G	75349390	missense_variant	p.Val245Leu
T/C	75349399	missense_variant	p.Lys242Glu
A/T	75349403	synonymous_variant	p.Leu240Leu
A/G	75349423	missense_variant	p.Ser234Pro
C/T	75349512	missense_variant	p.Gly204Asp
T/C	75349585	missense_variant	p.Asn180Asp
G/A	75349734	missense_variant	p.Thr130Ile

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_05111.1

MSIRTNPMKAVPTLLKRLVTVDKQAKLKDLKSELTNIKDLFSKVKKNEQDLLDKLTKVDGYLRNNNIRKLMEDEEMICKEIKESTKKLLPADQFPQPEKANKEATASRPSTPQPEESEVIKKNYESLGDTEMKCLKSLLHFPENSVMKRRNIILWWVGVGLVEMEAAKEKGEYMFGKLMNHKLILPDKYDFVNKLFKVNPLVYGVHESRKKANEGKKPFQTYSKIVTSSHQSDSPKCLALNKLKVELSDEFGSKSNHFTSIFNTGASYLIFGSQRMAKMKELQVLQLGRWLHASPKHHIEVNSEEFLKELRNQEKLKYLSLRGISRISQLPDSIFQLKSLETLDLKACHNLETLPGDIALLKNLKHLNLSQCYLLDRMPKGIDKLNKLEVLKGFVIGSSDKTGDLANLSKLKQLSIHIGSGAIVRDIEFPSGSFSVLEKLKISWGVFATRYSEIELKLPQKLKKLHLEGFPGQHIPEWLKPDKITTSLCELYITGGKLQSMDLQGYAHVSCSLQTIRLKYLQRLNIN*

CDS Sequence:
>Vu_05111.1

ATGTCTATTCGGACAAATCCCATGAAAGCAGTGCCTACATTGTTGAAACGTTTGGTGACTGTAGACAAACAAGCAAAATTGAAGGATTTGAAAAGTGAGTTGACCAACATAAAGGATTTGTTTTCCAAGGTGAAGAAAAATGAACAAGATCTACTTGACAAGTTAACAAAGGTGGATGGCTATCTTCGCAACAACAACATACGTAAGTTGATGGAAGACGAGGAAATGATTTGCAAGGAAATAAAGGAATCAACTAAAAAGTTGCTGCCAGCTGATCAATTCCCACAACCTGAAAAAGCAAATAAAGAAGCTACTGCATCACGCCCTTCAACCCCACAACCTGAGGAGTCGGAAGTGATTAAGAAAAATTATGAGAGCCTTGGTGATACTGAAATGAAATGCTTGAAGTCTCTCTTACATTTCCCAGAGAATTCTGTCATGAAGAGAAGGAATATAATCCTTTGGTGGGTTGGAGTGGGTTTAGTTGAAATGGAAGCAGCAAAGGAAAAAGGTGAGTATATGTTTGGAAAGCTTATGAATCATAAATTAATTTTACCAGATAAGTATGACTTTGTGAATAAATTATTTAAAGTTAATCCTTTGGTTTATGGTGTTCATGAATCAAGGAAGAAAGCAAATGAAGGAAAAAAGCCTTTTCAAACTTACTCAAAAATAGTTACCTCATCTCATCAGAGTGATTCTCCTAAATGTTTAGCACTTAACAAACTGAAAGTTGAACTTAGTGATGAGTTTGGTTCTAAATCTAACCATTTCACAAGTATTTTTAATACTGGTGCAAGTTATCTTATATTTGGATCCCAAAGGATGGCCAAAATGAAGGAGTTGCAGGTGCTTCAACTTGGTCGTTGGCTGCACGCTTCACCAAAACATCATATTGAAGTGAACAGCGAAGAATTCTTAAAGGAGTTAAGGAATCAAGAGAAATTGAAATATCTTAGCCTTCGTGGAATATCTAGAATATCTCAGCTGCCAGACTCCATTTTTCAACTTAAGAGCCTAGAGACTCTCGACCTCAAGGCCTGTCACAACCTAGAAACATTACCAGGTGATATTGCATTATTGAAAAACCTCAAACATTTGAATCTGTCTCAATGCTACTTGTTGGATAGAATGCCAAAGGGGATTGACAAGCTGAATAAGCTTGAAGTACTAAAGGGATTTGTGATTGGTAGTTCTGACAAGACTGGAGATCTTGCAAATTTGTCAAAACTAAAGCAACTCAGCATACATATAGGAAGTGGGGCTATTGTTCGAGATATAGAGTTTCCATCGGGAAGTTTCTCAGTGCTTGAGAAACTAAAAATATCATGGGGTGTGTTTGCCACAAGGTACTCTGAGATTGAGCTTAAGCTGCCTCAAAAGTTGAAAAAGTTGCATCTTGAAGGCTTTCCTGGACAACATATTCCAGAATGGTTGAAACCTGACAAGATAACCACAAGTTTGTGTGAGCTATATATTACAGGAGGAAAACTCCAAAGTATGGATCTTCAAGGATATGCTCATGTGTCTTGCTCATTGCAGACCATACGGCTCAAGTACTTACAACGTTTAAATATTAACTGA

Promoter Sequence:
>Vu_05111::LG1:75350122-75352122(-)

CTTCCGCTGCGCCACTCTGATTTTTTGTTTATTGATTTATTACAAAATAAACTTAATTAATAGCAGTTAAGGTGCATGATTAGTATAATGTACAGAAGTTGCAAACTATGGGCTAGATTCACCCTCTAACTCCAGAGGAATGAAAAAGCGATATCAATCTTGCTGATAAAGACAAATTGCAGCAAACTTACTCATGAAAAACAGTCACTTAAAAATAACCTGTTATTCAATTTTTCATTTCATATTGAAACTCTAAATGTCAAACTAAACAGCACTCAATATACGCAGAAAGTAATTATATTTGTGTATTGCATTTTCTCCTGTATCGAGTCTATATTGGTACTTGACATGTACTGGCTGATCTGATCAAGCTACTAGTCTTTTGAACCAGAATGACATGCCTTCTATCAATCCCAAGATGTTTTACAGTCAAAAGCCCAGCCAAGTGATTTGAAAAATATCTTCTCACTTCTTATTGAAGCTTCATCAATCTCTACCCTTTTATATTTCTATTTAGTTAATGCAAAATGGAGAAGTACTTAAACTTTGTCTGAAGTATAGGAGAGATCAGATGTCAATCTTTACTTAGTTGTAAGAATGTAATGAGATAATCACATATGCTTGCCATTATACACTGACTTTTAATCTAATGATAGCATTTAGGTATGAATGAGAGTTGCAGCACATGCAGTTTTTATGCTTCAAGGAAGTGTTTGGTTTGCTAAAATATGTTATATTTTCATTTGTGACAATAATTTTCTTACTAAATTGCTAAGATAAGAAAATTATGTTTTGCTTTTACTTCTTGTTCTCAGTTTTAATTTCTTGACTAGCTCCCTATCTTCACCACCTGTTTCTCTACCACTTCTTTATTGTGGATTCTCAGTCCTGAATTGTCTAAGATCTTAAAGACTTATGGGGTTATTGTTATAGAAGAATAAAAAGTGAAACTACTGTAATAATCAAACAAAAATCTTTTGAATAGATATAACGAAATTGAGATGATGATTTATTACATTTTTGTGATACTAGTTTGCAACTATCAAAATTTTCAGAACGGAGCAGCATCAGTATTAAACGTCACTTCATTTTCTTATGCAGTTTGGACGCTTAATTTCTTAGTTGGAGTGATATTAAATAGACACATATCCAACGAACAGAAACACCAGTTAACTCTGGACATTTATTCTAACATTTAAAGTACTCTGTTTCAATCCCACATCGACAGTACTAGAAATAGTAAATGGAATAATAGGATACAAATATAACATGTTTCACTCGGAAAAACATACTTACCTGGACAGGGTCGATGGACGATCAAGAAGATCCATGGCCTAGAAAAGTGACATTCACTGCACTTTGAATGGGTGCTTTTCTAAGGTCTGTCCCAGTGACAGAGCCTATGTCATAATTTGTTGCAGTGGGGGCCTGCGTTCGCGCGGCCCCTTTTTAGTCTATCTTTTAAAGTTTTCTGTATATAATCACTGAAATGAACTTCTATTAATGTGAAGAATATCCTGGTAATTTCAAGGTGTCTTTCAATTACTCTAAAATGTTACTTGGGTTCTGGGTAAGTTCAGAATCAAGGAATGTGGCAGATGTTCCTGAAAAGAGAAATGAAACATTCCTGGGATTCTTTTCTTTGCTTCTTATTGTTCCTGAAAAGAGAAAAGAAACATTTTTGGGGATTCTTTTCTTTGCTTCTTATTGGCTATTGGAATATCTTGATGACAAAGTTCAGCTCGGTAAAAAAAATATTTCTCTCCAATCTTAAGTCCCATTCCACCTATCTCCAATCTCGAGCAAAAGTATTGTTTCTTTTATCAGGTTTTTATGAGATCATAGACTTGATACCTCAATCTTGTTGCAAAACTTTATTGCTTCGTTAACTGATCTTTAGTCTCAAAACACCACACCACTCTGTCCCTCCATCTTATAGGAAAAAATATAGTTTCTTTCGTCTCACAAGTCTGTTCTTCGGTCTCAAAGCAGAAAAAGAA

Gene Sequence:

>Vu_05111(-)