Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_05173	LG1	76677618	76678397	hypothetical protein LR48	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	cellular response to zinc ion, cellular response to zinc ion, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, response to zinc ion
Cellular Component	located in	nucleus, nucleus, nucleus
Molecular Function	enables	protein binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, DNA binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, DNA-binding transcription factor activity, RNA polymerase II-specific, RNA polymerase II cis-regulatory region sequence-specific DNA binding

No SNPs found.

Sequence Details:

Protein Sequence:
>Vu_05173.1

MDDGNAELSDKLSNNVLFLNPESSSSFQASASVNTVPELCRSSSRTCTHTHTCNPPGPDAAHTHTCYHTHTQIFAPEDDDHKEHTNSKSKRPSGNREAVRKYREKKKAHTAYMEEEVKKLRLVNQQLARKLQGQALLEAELARLRSILALLKGKIDSELGAFPFQKQCNSYILKEGDAGLLSTARTYGLQCQNKLPCFHPHAGSSSQVNICAYGKSVSPWEGNCQPEIVDCHVDANNLTSTEGQTVETVDNFLSSASQE*

CDS Sequence:
>Vu_05173.1

ATGGATGATGGAAATGCTGAGCTTTCTGATAAGCTTTCAAATAATGTTCTATTTTTGAATCCAGAGTCATCTAGCAGTTTTCAGGCTTCAGCATCTGTGAACACAGTTCCTGAATTATGTAGGAGTAGCAGCAGAACATGCACCCACACTCACACTTGCAACCCACCTGGCCCTGATGCTGCTCACACACACACATGCTATCACACTCACACCCAAATATTTGCACCTGAAGATGATGACCACAAGGAGCACACCAACTCCAAATCAAAAAGGCCTTCTGGCAACCGAGAAGCAGTTAGGAAGTATAGGGAGAAGAAGAAGGCACACACAGCATACATGGAGGAGGAAGTTAAGAAATTGCGTTTGGTGAATCAGCAACTAGCGAGAAAACTACAAGGGCAGGCACTTCTTGAAGCAGAATTGGCAAGGTTGAGGAGCATTTTGGCACTCCTAAAGGGGAAAATAGACAGTGAATTGGGTGCTTTCCCCTTTCAGAAGCAGTGTAACTCTTACATTCTGAAAGAAGGGGATGCTGGTTTGCTTTCTACTGCAAGGACATATGGCCTTCAGTGTCAGAACAAGTTGCCATGCTTTCATCCACATGCAGGATCATCATCCCAGGTCAACATTTGTGCATATGGAAAGTCCGTGAGTCCATGGGAAGGAAACTGCCAACCTGAAATTGTAGATTGTCATGTTGATGCAAATAACTTGACCAGTACTGAAGGACAAACTGTTGAGACAGTGGATAACTTCTTGTCATCTGCATCTCAAGAGTGA

Promoter Sequence:
>Vu_05173::LG1:76678397-76680397(-)

TAAAATTTAATATTTTTATAAGATAGGAGCTAAAATTATAATTTATCAAAAAATCAATTTTAAATTAAAAAAACTAGAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAGTTTCGGTAGGGTTTGGAGGTCTCTTGCTAAAACACTCCTGGTTGTACTTAAGACTAGATGGACGTTGAAGACCGGACAGACGGACTTTGTTCGAAGCGCTCCAAGTTGAAGACCGGACCGGGCGGGCTTTGCTCCAAGCGAGTGGACGGACGTTGCTCCATGCACTAGGTTGAAGACCGATCAGACGTTTCTCCATGCACTCCAGGTGGTCGTCCACCTCCTTCTCCAAGCCGGGCGGGCACCTCTCAAAGGCACTCCGACGCTCAAGTTAGTAATGTAACCGAGCGGTAAGTAATGCATGTATATAATGCATCGTGTCTAAAGTCATACTTGAGACCTTTATTTATACTTAGTTGTGATGAGCTTTTACCTTTTGTCGGCCTAATGACGGTCCAATCGCACCTTAACCTTCATTAGGGACCTCCATTAGGGGGTTAATGAGTCATTATCGTTTATAATCTAACCATGTGGTTGGCTCGGCCGGTAGTTAGGCGGCTGATGGACGGTCAGCTTAATAATCAGCCGCTCAGTCGGCCTTATCTGAGGACTGTCTAGTCCGGTGGTATGGGTAGACCATTCGATAAGCGATAGAGTATGGAGACCGAATGATTCCATCGGTGTATGAAGGAGCAGGGGACCATTATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATAGATATATATATATATATATGTGTGTTTTTTTTTTTGAGAGTGTACATAGAAATTACATTTACCTCTTTTAAAATTCTTGATAAATGTTATTTATTTATATTTTTCGGACACTTACCTCTTTTTCATGAAGAATAATTTAATTTTAATTTTATTATTATTGTTATTATAATTTTAGTATTTATTAAAAGCATAAAAAAAAAGATGAATGTGTAATAAATATCATGTAGCATATATTATGTAGATAACATGTAAATTGCCCCTTTCAGAAAGAGAAAATGTCTACAAGGAGGTCCCATCGTCATGAGTCATGCTTGTGAGTGGAAGAATAGTTCCACTTCTTGTACCTCACAATACAATCCTCTCACTTACCCTTAACACGCAAATTAAGGCTAAAGAACAATCTGGAGCAACGCATAGACTTCTCAGAGGCTCACCCTTTTCCATGGCCTGAGTCCTACCAAGAACGAATCTTGAAAGTTACATATAATAAAACAAACAGTCATGCTTCTGGTGCCACCAAGGGCCAGGTAATTCAATCCAATCTCTAATCTTTCATCTCTAATTTCTAACACAAAGAAAGCACACTCTTGTTCCTTTATTGGCTCTTCCATATGACTCTTCATCAAGTTTTTTGGCTAGTGTTATTCTGTGCCATGCCATCTTGCCTCCACTACACCTTAGATTCTCTCTCCTCTTCCATCTCACTTCAATTTTAAAAAGGTTTTTCCTTTATGCTCAGTGCTGTATTATTGGGAAGAGAATCCAACTGGGTAGTCTTTACTTTGCTCAAATAAGCTTCTTTGGGAATCTTTGTCACCCCAACATCTAAATTTGAGAATACTATTCGACATCATTCCTGGGCAATTGTTTAGTCAGATATATATTCCTTGATCAGGACCCCTCAAAAATGAATTCTTTGACTGTTTTTTGTTCTAGGTATATGCTTCTTTGCATATATTCCATATTAAGTCTGTGTGCGTCTGTTTTACATAATATATTGGGAAGGTTTTCTGTGTTCTATTCCATTTTCATATCATAGTGGTAGTTAATTTCAAATGGATGTTGCTGACGCACCATTTTGTTGAGACTGCTGCTGATTATTCGTTTGGGGTGCAGAAAGAACAC

Gene Sequence:

>Vu_05173(-)