Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_05382 LG1 80829116 80830272 PREDICTED: ethylene-responsive transcription factor ERF109-like
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Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, root regeneration, regulation of auxin mediated signaling pathway, regulation of transcription, DNA-templated, regulation of tryptophan metabolic process, root regeneration, regulation of transcription, DNA-templated, defense response to fungus, regulation of auxin mediated signaling pathway, regulation of tryptophan metabolic process, cell division, defense response to fungus, regulation of transcription, DNA-templated, regulation of auxin mediated signaling pathway, regulation of auxin mediated signaling pathway, defense response to fungus, phloem or xylem histogenesis, regulation of auxin mediated signaling pathway
Cellular Component   located in   nucleus
Molecular Function   enables   transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding
SNP Position Effect Amino acid change
G/A 80829159 5_prime_UTR_variant
A/T 80829162 5_prime_UTR_variant
A/G 80829734 missense_variant p.Ser179Gly
A/G 80829763 synonymous_variant p.Gly188Gly
T/C 80829775 synonymous_variant p.Thr192Thr
C/A 80829824 missense_variant p.Leu209Met
T/C 80829847 synonymous_variant p.Ser216Ser
C/T 80829894 3_prime_UTR_variant
G/A 80829895 3_prime_UTR_variant
T/A 80829907 3_prime_UTR_variant
C/T 80829919 3_prime_UTR_variant
T/C 80829965 3_prime_UTR_variant
C/T 80830031 3_prime_UTR_variant
C/A 80830118 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_05382.1
MSSSSSFSPATLTPEQELSVIVAALTNVVAGSTSSDVVSLPDFRLPNASQPLAGNTFSPPTMDTCRECNIAGCLGCNFFPEEKKKQKRVKKKYRGVRQRPWGKWAAEIRDPRRAARVWLGTFNTAEDAARAYDKAAIEFRGPRAKLNFPLVDESLSMQQSKPERVAAEEQIKNENLNQSMEMETLEFGNKDTEFWDRIGEADFHQLMMLMDFTGDSSDSATGNTLSS*


CDS Sequence:
>Vu_05382.1
ATGTCTTCCTCTTCCTCCTTCTCCCCCGCCACTCTCACCCCTGAGCAAGAACTCTCCGTCATCGTCGCCGCTCTCACCAACGTCGTCGCCGGCTCCACTTCCTCCGACGTCGTCTCCCTCCCGGACTTCCGCCTCCCCAACGCCTCTCAGCCTCTCGCCGGAAACACCTTCTCGCCGCCCACTATGGACACGTGTCGCGAGTGCAACATCGCTGGCTGTTTGGGCTGCAATTTCTTCCCCGAGGAGAAAAAGAAACAGAAGAGGGTCAAGAAGAAATACAGAGGCGTGAGGCAGAGGCCATGGGGTAAGTGGGCGGCCGAGATTCGAGACCCACGCCGTGCGGCACGGGTCTGGCTGGGAACTTTCAACACGGCCGAGGATGCTGCCCGGGCCTACGACAAGGCCGCCATCGAGTTCCGCGGCCCACGGGCCAAGCTCAATTTTCCCTTAGTGGATGAGTCCTTAAGCATGCAGCAGAGCAAGCCAGAGAGGGTTGCAGCTGAAGAACAAATAAAGAACGAGAATCTCAACCAGAGCATGGAAATGGAGACGCTGGAATTCGGAAACAAAGATACTGAATTCTGGGACAGGATTGGCGAAGCTGATTTTCATCAGCTGATGATGCTGATGGATTTCACTGGAGATTCTTCCGACTCTGCCACCGGGAACACTCTTAGTTCCTGA


Promoter Sequence:
>Vu_05382::LG1:80827116-80829116(+)
GTCTACACTTTAATATTTTTGAATTAAATATTGTTAAACCGGAAGTAAATAAATAAAGATTGTTTTTGTAAAATAAAATTTACAGAAATATGTTGGCAATACGTAAATTCAAAATTGCATCTGATTCAAAATTATCTTCATCAAATGTTGGTCTTACGAAAACTTATTGATTGTACTTTTTCAAGTTAATATAAGTACTTTTATCAAACACGGATTTAGCAAAAAATTTAAAAAATATTAAATATATCATCTCATATGTTTTGTATACTTTCACATGTCATAATATAGATCATGTTAACCAATGAACTTTATATATTTTGTTAGATATATACAAAATTTCATTTAGTAACTGCTATAAATTTTTTGTAATCTATTTGCTCTACATAATAGATCCATATGCTAGAAAAAAAAAACATATTAGTTAAACTGACACTAATAAATTATTAGCATTAGATTTGTGTCAATCTTTGCATAAGTTAAACCAATACTACATGTTAAAACACAAAGTCAATACTATTCATCCCTTAGTGTTGACTTTCTAAGTTTTCTATGTAAAACTTAATTAAAATAATCATGTGGATTTACTTGTTAGATCGGGTGAAATAACTCATATATATGAACTAAACTTTCTTAGATAAATAAGAATTGTTTTTTCAAGTATTTATTAATTAACATTTTTACACCAAACATCTAAAAAAACCTTAAATGAAATTGACGTGTGAAAAAAATAATTGATAACCGAAGTACATTTTACTTAATATTTATTAATTATATTTATTTTATCTTTCACTATAATATTTGATTGATTAATAAAGGTGGATTAATGAAACGTGATGAATTTTGACATAAATTCGGCTTAACTAAATATTAATACACTTATAGATTTAGATATTTACAATTTAATTATTATTATATTAGTTTTTATTTATTATGTATTAAAAAATTTAGATTTTTAATTAAATTTTTTCATTTTTTTAATAAGTTGACGTGGTTATTGTTTTTTGTGTCATCTTCAATAATTGTCTTTTTATATGTAAGATTTTTTAGTTAATATAAAATATACGATAATTAATGTAAAATGATACGTAAATTTTATTATTTTCACTAAAAATAATATAAATCACATGTTATATTATATTAATTATAATATTATTTTATATTAATTATAAAGTCTCAAATTTTCAAAATATTTAAGAAAGGTAAACATGATATAAAAACAGGATAACAGTTATATTATTCAATTTATGAAAAAATTAAATTTAATATAAAAATTAAATACATAAATAATTAATAGAAACTTAATTAAAAATAGTAAAATTTATGAAAATGTTAAATTTAATGGAACCTACAAATGTGGTGGGATGCACAAGAAACTGTGTATATATATTGTATTGTATTTGCAATCGTTTATAGTTAAATTGATTAATAAAATAGTATGTGTGATATTTAAAATAGAAAAACTATGTAATATTTTGATGAAGTAGTTAAAGAAATATTATAAGGAAATTTAGAATTATTGATGGAGTACAATGATATTTTATTAATTAAAGGATAAGTTAAATGAAAATAAGAAAGAATGTGTAAAATAGTGATGGTTTGCGTTGACGGTCAATATTAAATAACATGACAAAGTTTGACATCCGTAGTAGTCCGTCCAGTTGCACCCAGCTAATGGTTTGCGAAAGAACAGGTCAAACCAATTTAAAGCAGTGAGTGAAGTGAAATCTCCCATTTCCTTCGTCCCAGACATTTTCTGTTGCTCAATCACTTCACATTGCTACTTTTCCCAATCCCACGCGACACCTTTCACCGTGGCAATCCATCACCACTCACAACCCTCCTACGTCACCCTCAAAATCTTATCTGTCACGTTTCTGGTATACACACGTGATCAAAAATCAATATCACTAACATGCGTGTGAAAACGGTGTTGACAACTGGCTTTAGCTGCCACGTCACCCCCAAACCGTATATAAGCAAACCCGTCCTCTCACTTCCTG


Gene Sequence:
>Vu_05382(+)
GCAGTTCGAAAAATCCTTTGACGCGCCAAACACAGAGACCACCGGCACCCTCCATTTGACTCTCTTCAACTGCTTTCGACTCCCATGTCTTCCTCTTCCTCCTTCTCCCCCGCCACTCTCACCCCTGAGCAAGAACTCTCCGTCATCGTCGCCGCTCTCACCAACGTCGTCGCCGGCTCCACTTCCTCCGACGTCGTCTCCCTCCCGGACTTCCGCCTCCCCAACGCCTCTCAGCCTCTCGCCGGAAACACCTTCTCGCCGCCCACTATGGACACGTGTCGCGAGTGCAACATCGCTGGCTGTTTGGGCTGCAATTTCTTCCCCGAGGAGAAAAAGAAACAGAAGAGGGTCAAGAAGAAATACAGAGGCGTGAGGCAGAGGCCATGGGGTAAGTGGGCGGCCGAGATTCGAGACCCACGCCGTGCGGCACGGGTCTGGCTGGGAACTTTCAACACGGCCGAGGATGCTGCCCGGGCCTACGACAAGGCCGCCATCGAGTTCCGCGGCCCACGGGCCAAGCTCAATTTTCCCTTAGTGGATGAGTCCTTAAGCATGCAGCAGAGCAAGCCAGAGAGGGTTGCAGCTGAAGAACAAATAAAGAACGAGAATCTCAACCAGAGCATGGAAATGGAGACGCTGGAATTCGGAAACAAAGATACTGAATTCTGGGACAGGATTGGCGAAGCTGATTTTCATCAGCTGATGATGCTGATGGATTTCACTGGAGATTCTTCCGACTCTGCCACCGGGAACACTCTTAGTTCCTGACGACTTCCATCGTTTCAGTTAATTAAGAAAAATTACTAGTTTTGGTAGTGTGTGTTTAAAAATTAGTACAACTCGGATAAGTCAGATTATTTGTTAATTACCATTTAGCTAGCTCCACTACGTATATTTCTGTATATCTTTCTTCCGCTAGATTTTACGGAGGAAGCTTCAAAGTACAAACAAATCGAGGGGTTCCTTTTCTATATTTTATTTCATTAACAACTCTTTTTTCACCTTCTTTTCTTTCTAGCGTATTACCATCTATTGTAGCTAGTTTCGAGAACACTTAGTATGTTAACTCGTGTCACTTTCAATTTGAAAGTTTTTGTTATGGGTTTCGGATAACAACGTTGAATTCATCAAAGTAAAAAAAGGAGAAGTTTGTCTTC