Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_05463 LG1 81962299 81966625 transcription factor bHLH153 isoform X2
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus, nucleus, nucleus, nucleus, nucleus, nucleus, nucleus, nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, protein binding, protein binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, DNA-binding transcription factor activity, RNA polymerase II-specific, protein binding, protein dimerization activity, protein binding, protein binding, protein binding
SNP Position Effect Amino acid change
G/A 81962563 3_prime_UTR_variant
C/T 81962603 missense_variant p.Arg165His
A/T 81963224 intron_variant
T/C 81963233 intron_variant
A/T 81963250 intron_variant
T/G 81963262 intron_variant
A/G 81963300 intron_variant
C/A 81963365 missense_variant p.Met89Ile
A/T 81963366 missense_variant p.Met89Lys
C/A 81963370 missense_variant p.Ala88Ser
T/C 81963411 intron_variant
C/A 81963417 intron_variant
T/C 81963421 intron_variant
A/G 81963460 intron_variant
A/T 81963529 intron_variant
T/A 81963545 intron_variant
C/T 81963561 intron_variant
A/G 81963585 splice_donor_variant&intron_variant
T/A 81963599 synonymous_variant p.Ser74Ser
C/T 81963941 intron_variant
A/C 81963962 intron_variant
A/G 81964066 intron_variant
G/T 81964259 intron_variant
C/A 81964284 intron_variant
G/A 81964463 intron_variant
C/T 81964545 intron_variant
G/T 81964680 intron_variant
C/T 81964681 intron_variant
A/C 81964682 intron_variant
A/G 81964683 intron_variant
T/A 81964732 intron_variant
G/A 81964763 intron_variant
T/C 81964909 intron_variant
C/A 81964956 intron_variant
G/T 81965015 intron_variant
C/T 81965171 intron_variant
C/A 81965211 intron_variant
A/G 81965217 intron_variant
A/C 81965221 intron_variant
T/C 81965233 intron_variant
A/C 81965279 intron_variant
T/C 81965338 intron_variant
A/T 81965436 intron_variant
T/C 81965484 intron_variant
C/T 81965629 intron_variant
C/A 81965881 intron_variant
G/A 81965989 intron_variant
G/A 81966002 intron_variant
T/C 81966045 intron_variant
C/T 81966246 5_prime_UTR_variant
G/A 81966272 5_prime_UTR_variant
A/T 81966374 5_prime_UTR_variant
G/T 81966388 5_prime_UTR_variant
A/G 81966444 5_prime_UTR_variant
C/T 81966506 5_prime_UTR_variant
A/G 81966552 5_prime_UTR_variant
G/T 81966557 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_05463.1
MIASSFCNADSMFSREEGIDVRKMMEHKRSPCSVDQSSYTSIASKRQKADLSISTKERKEKIGERIVALQQLVSPYGKTDTSSVLKEAMEYIGFLHKQLLSAPYLETSAAAKMQGMEACSLRSRGLCLVPVSFTIGVAESNGADIWAPIKTTTSPKLENDVSQFR*


CDS Sequence:
>Vu_05463.1
ATGATAGCCAGCTCTTTCTGCAATGCTGATTCTATGTTTTCAAGAGAAGAGGGGATAGATGTTAGAAAGATGATGGAGCATAAAAGGAGTCCCTGCTCTGTTGACCAAAGCAGTTATACTTCTATTGCATCTAAAAGGCAAAAGGCTGATTTATCTATCAGCACTAAGGAGAGGAAGGAGAAGATTGGGGAACGAATTGTTGCTCTTCAGCAGCTTGTTTCACCATATGGAAAGACAGATACATCTTCTGTTCTAAAGGAGGCAATGGAATACATAGGATTCCTTCATAAACAACTGCTCAGTGCTCCATATCTTGAAACTTCAGCAGCAGCCAAGATGCAGGGTATGGAAGCATGCAGCCTGAGGAGTAGAGGGTTATGCCTTGTTCCTGTGTCATTTACAATTGGAGTTGCTGAGAGCAATGGTGCAGATATCTGGGCTCCCATTAAAACTACAACTTCACCTAAATTGGAGAATGATGTGTCTCAATTTCGTTGA


Promoter Sequence:
>Vu_05463::LG1:81966625-81968625(-)
CAAGATTCGGAATTCAAATACCTACTCACTCATCAATTCTTATTTACTTTATCATGAAACAAACAAAATTAGGTTAGGAGTTGACTTTCTATATTTAAATAAAAAGTATATATACATTTAAATTAAATATTACTCACAATTTATTTCCATAAATTTTCTGCATGTATACTTTTTTAAAATAAAAAAAATTAAAGTTAAATTTTATACACAAACAATAGCGGTTTTCTTCTCTTAAATCTATTTTTTAATCCATTTTTTTAGTTTTGTAAGAGAAAAGTCTGTACTTGTGTGAAAACTTTAGTTTAAACTCATTCATAATTGAATTTTAAGATTTAAAACGGTCTAAAGAATATTTCTGGAATATATTTTAAAATCAGTTATATTGATATAAGATTGTATTAAGTAAAAATATAGACACAAGTTAAAAAAAATCTACACTTATTGATTAAATTAATTTTTAAGATATGATAGTTTGAAAATAATAAAATTATAATCTTAACTTGAATGAGAAATAGGAAAGATCTAAATTTAAGAAGTAGATCAAGTAGTTTAATTTTCTTCATTCTTCAAGAGGACAGACATGTTCTTTAAGTACAGTGTGTTCTTCTTTTACGCGACATTGGTTGGTAGTGTGCTCTTTTGAGACATTAATGTAATTACAGACATTAACCCTCCTTAGCGCAAATAAACTTTTCCTTTTGATAATAAGATATATTTTTTGAAAAAATTTATATGCTTGAGAATATGTATGTAAATGGTAAAATAATTGTTTATCAGACAAATAATAATTTAAATAATTTTTAAAATATTATATTTTGTAAATAATATATAATGCTATCTCTAAACTTGACATAGAAACACATACAACATGTCAATTTAAAGAATATTCTGTCCTTTATGATAAAACTTCAAGAGTTATGGACCCAAGTATTACTTGTATGTATGCTAATGTTCTTAATATTTTTACTCAAATTTAAATATATTATAATATTTCAGTGTTAACTTTAACACATTTCATATTTGAAGAATAATATTTCCTCCAATGCTCAAATTAGTATAAGTGTATGTAATTTTTTATAATATTATAATTTTTTTCTTATTAATTATTTTTTTACTAAAACAGTCTTTATTAAAATTACTGAAAAACTGCATCAACTTTGTAAGAAAGATATCAGTATTTATTAATAAAATAGAAAATTTTAAAAAGTATAAATTTATTATAATCAATTTTTTTAATTTTTATAGTTTATTAACAGATATAGAAACTTGAGTATTTTTTTGTTCTTAAGAAAGCAAAAAAGAAAAAAAAAATGGAATTCTGACTTTTTATTTTAATGTATAAATGATCACTGGTGGTTATGTCACAAATATTTGTCTTCTGGGGAAAGGTAGGGATTCCTGATGTAGACCAATTTAATTTAATTTCCAAATAAATGATTTATTTGTTCATTATTATTCATTTTATTTACTCTTCTGATTTTTAAAATTATAATCATATATTATCTAATTAATAATAATAATAATTTATATTTACATATATATAATTTATAATTTTTAAAAAATGGAAATATGCAAAATTCAATACAAATATTTATAATATTATATTAAAAAAATCTATTAAATCTTCAAAAAGATAACAGTTACATTTTAAAAATTAAAAAAATTAACCACTTATTAGTAGAAAAATAAGATTAAACATATTAGAAAAAAAAGTAATTAAGCAAAACACATTTTTTATTTTCTTCTTTAAGACAGATAATTTTTTCTTTGAAATGAACAGACATGGTTTGAAAAATATGTAGTGTGACTCTTCTTCTTAAAATAAAAAAAAAAACATTGTAGCCAATTAAAAAAAATCCGTTATATCTATTAAGCACAGTTTATTGTATTTATTATATGTAGAAAGATTAAAGAGAAAAAGAAAATTATAAAACCAAAACTTGTCTGGGTTGGATATTAGCTGTCAAGTATATTTATGACAATATACATTTAAAAATCTT


Gene Sequence:
>Vu_05463(-)
ACGTAAGGAATTATTGTATTATATTCCTTTCTAGCTTTATAAAATCACATTTTGACATTAACCTGTTCCTCCTTCTTCTTCTTCTTCTCCTTCTTCTTTCTCCACAACAAGCCACACACGCCTCTGTATTTTTTTTCTCAGCTTCACTTTCTTTTCCTCCATTTATGAGGTTCCACTAGTTTTTCTTTCTAGGATCAGTACTTCACTTCTTTCATTGTCCCATATATGCCTCTGTTCCCCACACTGCATGCTACTTTTTCTAAGTTTTTGAATTTTCTTACCATAGTATTGCAATGAAATTCTAATCACAGGCACTGCTTAAAGTTTCAAGCTTTGCAACTTTTGGAAGATACCCATCTAACCATTTCAGTTGCCTAAGGAAGGGGTTTTGGTTTCAACCATTCCTGCTTTTACCTCCAAAAGGGTCATAGATGATAGCCAGCTCTTTCTGCAATGCTGATTCTATGTTTTCAGTAAGTTCTTAACCTAAATTTAGTACCATTTGTCTTTTTTGTCTTTCAAGTGTTATCCCGTGTTCTCACTTTTCATGGAAGTTATTAGTGAATGAGTTTTTCGGTGGAAAACTTCTAGAATTTGTGATCAAAATTGTTGTGTTTTATCTACCTCTCTAATCCTCATCAATCCTTGCACTCCAATTCCGAGAGAATTATGATCAGAATTGTTCTTGTTGAAAGTACATATGTAATAAATGAGTGGTTGAGCCTATATTTTATTGGTATTTTTGATTTACTAAACCCCAACTCCAAAACCAACCCTGTGATTCTCTCTCTGGATTAACCATTGTCTTTTTCCGGAAATTAATTAATCACTCCTGTGTCCTTATGCATGTTGTCAATTAAGATATCCTTTAACATTAAACAAAGGTGGTTGGGAAGATTTTGTACGCAAGTTAGATTCGTTCATGCAAGGTGTATGTATGTGTGAATGCGTGTGTATGTGTGTGCTTACAATCTCTTTTTCAGAAATCAAATGGTGGCCCCCCCACATTTGAGGTTCTGGACACATCACAAAGATAGAAATTTTTTATTGATTACAATTAAAATAAACAAAAGAAAATCAATAATTTAACAATAATTTTGGCATGGTATGTAAGCTCACAATGTTGACTAGACTATTCTGGAATTAAGATATTTGAACCATTAATAAAGTTGTAAACCAAACCATTGAATACGGTGATCAATGTTTGTGACAGTGATGACCTTTGGAAGGTTTGTATTGTGGCTTATGTGGTTTGAATATGCATGGATGGTTCATTTTCTGTTGGCAATTCTTTTCTTTGTAGTGTAGCATCATGGCTATGCCTATGGGGCCACGTTTTGATTTTCTGTTGTGGTGTAGCTGTTACCAGTTTGTATTCTGAACTTATCTCATATATTTAATAAATGGTTCTGTTGTACAGTGTCAGCATTGTTCTGACTGAACAGTGCATGTTGGTATGAGTTCATGATGTATTATTAATGTAAAAAATCAATCTTGTAACTAGCAGTATTATTTTTTGCAAGCAAAGTTTGAGGATACATATTTATGGATGGAAATCATTTCTTCTCATTTATTGTCTCACTACTTAAAACGAGACTCTTCATTGCACACAGTTTTTTTTTTCCTTTTCAACAGCACTCTCTCTCTATATATGTGTTCTGTGTTACATGTATGCATGGCAGGACCCTAGAGCAGAAGCAAACACTGCCATATGGGAGGGAAAAAATTTCCTCTTTATTGGAGAAGTGTTTGAAATTTGATAAGCTTTCATCAAATGAAGGCATTAGTTTGACTTTGGTCCTTGTTTCCTGTCAGTTTTATTTTTTATGCTTTTCTAACTTCTTTCATGGAGGGACAAGGTTCTGAATTCTGATTGTGTTCTTTGACAAAAAAATGTTGTGGTTTTTGAAGTTGTGAAAAAATGCAACTGGGGCAGCCAGAGTTGCAGTTGTGATCTGATTGCAGTGAAAACCTTATGTTGCAGCTGAAATTACAGTTCAGAGAGGGTGCTGATGGCAGATTTATTCAAAGAACTGTTTGCTCATTCAATAGATTACCCCAACTTTTTTTTATCTCCTGTGAATGGATGACAATCATACTGAACTAGGGGCCAAAAGACTGTAACTATGGAACCAGTGGGACCAACCCACATTGACTCCAATCTGTATTCAGTACTTCCTCAATTTGTGGCTTTTGGCTTCCCCAAAGTTCTGTTGAACATGTTTCAAGCATAAAAGTAACTAAAATATATATGGTAGTAATTACTGTGTGTGTTGAATATGAACTATAGTTGTGTGTCTGACAACTATGATACTCAAGTAAGAGAAAGTGTTGATGATTTGATAGTTTCTTTTATAATCTGTATTCCTCTTTTCATTTTGTTCATCCTTCTTATACAAGATGTTTCATTGTTGATGCCACCAGAGAGAAGAGGGGATAGATGTTAGAAAGATGATGGAGCATAAAAGGAGTCCCTGCTCTGTTGACCAAAGCAGTTATACTTCTATTGCATCTAAAAGGCAAAAGGCTGATTTATCTATCAGCACTAAGGTTTCTTTTTTTCTCCTTCTGTTGTTCTTGGCTGCTGAATTACACTTCTATTTCATTTTCCTTTTTTCTTTTGAGCATCTACTTATATATTTTTATAGATATCCAAGCTTTACTATTTGAAAGTTTTCATCTAGGATCATGCAATGGTGCCTCTTCTGATCTTCTCTATATAAACTCTCTTGTTCGTAGCTTGTAATCTATGAATTGCCACATATTACATTTGTGTTTCTTATCATGCATAGCATAATTTCAAACCTTGAATAGGACTGTCTGTCTTATGTTAACCTGCATAATTTCAACCTGTTACATGGAACTCTCCTTGATACTCAATTTGGATATGTGATTTTCTTCTAAATTGAAGGTTTACTTTCTTCTTTATTTCTTTGATTTTTCATGTAACATTTCCAATGTTTCTGTGGATAGGAGAGGAAGGAGAAGATTGGGGAACGAATTGTTGCTCTTCAGCAGCTTGTTTCACCATATGGAAAGGTATACAACAACTATAGTTCCTGACGCAATAACAACTTATAAATTTGATGCTCGTCATGCTCATTCTTGAATGAAATAAAACTAAGAACTGCTTATTTGAGTTATATGATATGTTATGTTATGTTTTTGGATTGAATGAATTGTTCTTTAGTTTCTCTGAGCTTAAAGAGTCTCTACTTCTCACTGCAGACAGATACATCTTCTGTTCTAAAGGAGGCAATGGAATACATAGGATTCCTTCATAAACAAGTTAAGGTTTGGCCATTCTTGCTACATTATGCTGAAATTATCACTGTTAATATTCTAGTAATTGGTTTCATATATAGCAAACATACATACTTGGTTTGGACCTAAAAAGACATTACAGATTCTAAATCATGTTTAACAAGACCTTGATCTTATGCAATTTTTTTCTCTTCCTTTTTTGGCAGCTGCTCAGTGCTCCATATCTTGAAACTTCAGCAGCAGCCAAGATGCAGGTAAGCATAACGTGAACACTCTCACCATGGATTAGCAAACGGATGAGGTCACACATTTTCTTGTGGGGGCGTTCAGCATCAAATTCATGAAACATTTATTATACCCACAAGAACCCTTGTCTCTACCATTCTTATTTGATGTGCTTATTTGAGAGCAACCCAAGAGTAAAAATGTAATATTTCATTGAAAACTGACAAAATCAACCAATTTAAAAAGAACTGCAGAGTAAAAATACAATAATTTTGGAACAAGAGAGTACTATGTAGCATGACTTTCTTGCAAATCATGAATGAAACCTTGATTAATGAAAGCAGTTCAATTGGTGGTTATAATTGAGTTTTTGCCATTTCAGGGTATGGAAGCATGCAGCCTGAGGAGTAGAGGGTTATGCCTTGTTCCTGTGTCATTTACAATTGGAGTTGCTGAGAGCAATGGTGCAGATATCTGGGCTCCCATTAAAACTACAACTTCACCTAAATTGGAGAATGATGTGTCTCAATTTCGTTGACAAAGTTTCTCACTTTTATTGTAGCCTAAAGGTTGCTATGCTAAGTTGCTAAAGCAGTGTAGTGGCATGAAAATTTGTCATCATACATCTAGATGGAATCCTAATAGCTAAAATAGTTAAAGCATTAAAAGAACTTTCTAGTCATGAAGCTGTTCCACACCTTTAAGATTTTAAATGGGTGATGGGGCTAAGCTTCCTTAATTTCTTGTGCTGATTATTAAGTGTATATTTCAAAATTTCTAGTTGTATAATGATTCCATGTACTGATTAGCTTAATGAAAGTCGTTTCTTGATTTGATG