Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_05481 LG1 82218613 82221405 PREDICTED: myb family transcription factor EFM-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   gibberellic acid mediated signaling pathway, negative regulation of long-day photoperiodism, flowering, negative regulation of nucleic acid-templated transcription, negative regulation of long-day photoperiodism, flowering, gibberellic acid mediated signaling pathway, response to temperature stimulus, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, negative regulation of nucleic acid-templated transcription, regulation of transcription, DNA-templated, histone H3-K36 methylation, histone H3-K36 methylation, histone H3-K36 methylation, histone H3-K36 methylation, negative regulation of long-day photoperiodism, flowering, negative regulation of long-day photoperiodism, flowering, gibberellic acid mediated signaling pathway, negative regulation of nucleic acid-templated transcription, negative regulation of nucleic acid-templated transcription, negative regulation of long-day photoperiodism, flowering, gibberellic acid mediated signaling pathway
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   protein binding, protein binding, DNA-binding transcription factor activity, protein binding
SNP Position Effect Amino acid change
C/G 82218623 5_prime_UTR_variant
C/T 82218672 5_prime_UTR_variant
G/A 82218759 5_prime_UTR_variant
C/T 82218765 5_prime_UTR_variant
A/C 82218881 5_prime_UTR_variant
T/C 82218951 synonymous_variant p.Pro18Pro
A/C 82219006 missense_variant p.Thr37Pro
C/A 82219076 missense_variant p.Pro60His
G/T 82219102 missense_variant&splice_region_variant p.Ala69Ser
T/C 82219160 intron_variant
C/G 82219172 intron_variant
G/A 82219221 missense_variant p.Arg81Gln
T/A 82219234 synonymous_variant p.Ser85Ser
T/C 82219262 synonymous_variant p.Leu95Leu
T/A 82219314 missense_variant p.Met112Lys
A/C 82219413 missense_variant p.Gln145Pro
T/C 82219451 intron_variant
C/A 82219459 intron_variant
C/T 82219470 intron_variant
G/A 82219516 intron_variant
G/A 82219600 intron_variant
T/G 82219676 intron_variant
G/A 82219684 splice_region_variant&intron_variant
A/T 82219855 missense_variant p.Glu207Asp
A/T 82220071 missense_variant p.Lys279Asn
C/T 82220083 synonymous_variant p.Ser283Ser
G/A 82220203 intron_variant
T/G 82220235 intron_variant
C/G 82220271 intron_variant
G/C 82220287 intron_variant
A/G 82220321 intron_variant
T/C 82220331 intron_variant
G/A 82220420 intron_variant
C/T 82220427 intron_variant
T/A 82220505 intron_variant
C/A 82221167 3_prime_UTR_variant
C/G 82221191 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_05481.1
MGSVLPELSLDLRPSFVPKTITDFLRHLSSATDRLATLHDFLSRLEDELRKIHAFKRELPLSMLLLNDAISLLKTESQKCRLRDSSPVLEEFIPLKKERDRNEGNNYNDNDMDNECRDKKNWLSSVQLWNNSTTNNYASDRKHQQLHTLENKKIEEGQSVGEDPFQSCSNRNGGRRAFMPFSRYSSSSSSVPVATAGLAAATKEEKEESVMNRLSLQTPSVKEGCGSRGSRSSSSRAVSSSPPTVHPSLRASSLQQTARKQRRCWSPELHRRFVNALQKLGGSQAATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRVPAGSGNQPVVVLGGLWMSQDQYNDSSKVSSSGSGSPQSPLHLTTGSRGGTSPTEGDSMEDDEDARSESYSWKSHMQKPGKVDV*


CDS Sequence:
>Vu_05481.1
ATGGGTTCGGTTCTGCCAGAACTGAGCTTGGATTTAAGACCCTCTTTTGTCCCTAAAACCATCACCGATTTTCTCCGTCACCTCTCTTCCGCCACCGACAGACTCGCCACTCTTCACGATTTCCTGTCTCGCTTGGAAGACGAGCTCCGCAAGATCCACGCCTTCAAGCGCGAGCTTCCTCTCTCCATGCTCCTCTTAAACGACGCAATTTCACTCCTCAAAACGGAATCGCAGAAATGCCGGCTGCGTGATTCTTCACCGGTGTTGGAGGAGTTCATCCCTTTGAAGAAAGAACGTGATCGGAATGAAGGAAATAACTATAATGATAATGACATGGATAACGAATGCAGAGATAAGAAGAATTGGTTGAGTTCGGTGCAGCTTTGGAATAACAGTACTACTAATAACTATGCATCTGATCGGAAACATCAACAACTGCATACATTAGAAAATAAGAAAATTGAGGAAGGGCAATCTGTTGGTGAGGATCCTTTTCAGTCGTGCAGCAATAGAAATGGGGGAAGAAGGGCTTTTATGCCTTTCTCCAGGTACTCTTCTTCTTCATCTTCTGTGCCGGTGGCAACGGCGGGACTGGCTGCTGCAACCAAAGAAGAGAAGGAAGAGAGTGTTATGAATAGGCTTTCCCTTCAGACCCCTTCTGTGAAAGAGGGGTGTGGTTCAAGGGGATCCAGAAGCAGTTCCAGTAGGGCTGTTTCTTCTTCTCCTCCTACGGTGCACCCCAGTTTGAGGGCATCATCGCTTCAGCAGACTGCGAGAAAACAGAGGAGATGCTGGTCCCCTGAATTGCACAGACGATTTGTTAATGCTTTGCAGAAACTAGGAGGTTCCCAAGCGGCAACACCAAAGCAAATTAGAGAGCTGATGCAGGTTGATGGCCTGACTAACGATGAGGTGAAAAGTCACTTACAAAAATACCGACTTCATACGCGGAGAGTTCCAGCAGGAAGTGGTAATCAGCCAGTTGTTGTTCTTGGAGGTTTGTGGATGTCTCAAGATCAGTACAACGACTCCTCAAAAGTTAGCAGTTCAGGGTCAGGTTCTCCTCAAAGTCCCCTTCATTTGACTACAGGGTCTCGAGGAGGAACGTCCCCAACTGAGGGTGACAGCATGGAAGATGATGAAGATGCAAGATCCGAGAGTTATAGTTGGAAAAGTCATATGCAAAAACCTGGAAAAGTTGATGTATAG


Promoter Sequence:
>Vu_05481::LG1:82216613-82218613(+)
TGGTATGCAAATTGCATCGATCTTTATATGGCCTCAAGTAATCACCATGTGCTTGGTTCGGAAAGTTTAGCTCAATTGTTCAAAAATTTGGGCTAAAACATAGTGAAGTAGACCATTCAATTTTTTAATGTCATTTTTCTATTGGGAAATGTGTTTACTTATATGTTGATGATATTGTCATTATAAGAAATGATGTTGATAGAATATCTCAACTAAAAGAGTACTTGTGTAGACATTTTCAAACTAAGGATCTTGGAAGTCTCAAATACTTCTTAGGCATTGAAGTAGCGCAATCAAAAGATGAAGTTGTAATATCTTAAACGAAGTATGCTCTTGATATATTACAAGAAACAAACATGATTGATTGCAAACCCGTAAACAATCCCATGGATCCAAACCAAAAATTAAGGACAAGAAAAGGTGAATTGTTTTCCGATCTAGAGAGGTATAGGAGGTTGGTTGGAAAACTGATTTATCTCACTATTACAAGGTCATATCTATCCTTTGTAGTTGGTGGTTAGTCAGTTCATCCAGGCTCCATGTGTGCCATTAGAATGCTCTCATTCGCATTCTAAGGTATGTAAAAAAAGCTCCTGAGCAAGGATTGTTATATAAAGATAAAGAAAGCATTCATGTATCTCGGTATTGTGATACAAATTGGGCAGGTTCGCCTATTGATAGACGATCTACTATAGGATATTATGTTTTTCTAGGAGAAAACATTATTTCATGGAAAAGTAAGAAATAAAATGTAGTAGCTCGATCAACAACTGAAGTCGAGTATAAGGCAATGTCTTCACTAACATGTGAACTTATATGGGTGAAATAATTTCCTCAAGAACTTAACTTTTATGACATACATACTACGAAGATGTATTGCGATAATTAAGTTGTTCTCCACATTGCATCAAATCCAGTGTTTCACGAGATGACTAAACATATAAAAATTGATTGTCATTTTGTTTGTGAAAAGTTGTTAACTAAAGAATTTTGTACTGAGTTTGTTGGGTCAAACGATCAACTCGCAGATCTGTTGACCAAGTCATTAAGGGATCCTCGGGTTGAGTTTATTTGTTCCATGCTTGGTAGTACATACAATTTGTATGCTCTAGTTTGAGGGGAATGTTAGGATATTTATCCTATTTATCATGATTATATTGTCTTTAGGGTTACCTTATTTATCATGGTTATATTGTGTCTAAGATTACCCTACTTATAATATATTATTGAATCAATTTATCTTATAAATAAAAGATTACGAGAGATCAATCACGTCTTCTATAATTATTTTACAATTTAATAAAATAACTACATTATTAAATATTGTTATTTTCATCATTGATATTTTTAACTATCACAATTTAAATATTATATTATTTATAATTATTCACCTATTTTTATAATTTTTGTAATAAAGTGAGATATTAAAAGAAATATATGAATTTATAAAGTATAACAAAAATTTAATAAATGACATAGTAATGCATGTATATTTTTTAATCTATAAATAAATATTGTGTAACTAAGTTACACCATAAACTTAATCTTTTATAGAATGGAATGGGATGGAACAAAATCCTCACCCTTAGAATCCATGGCCTTAACGAAGCTTTAAAGTAATCTTAAATTTTAACAGTTACATTAAAAAAAAGAAAGAAAATATAAACAATATAATTTATAATAATTAGTATGTAACCTTAATTTTATACAATTAAATAGAGTTCTAAATTTTTATTGGCTATCTATTAAATTTATAAATAAATTTTAGTTATATTATTCTTAATTCAGATTAATAATAACAAAACAACGAATTATTATTTAATTAGGTTATTTAAATATTAATTTTTGATTAAAAAAATTGAAAATTAAATTATTATTATTATTATTATTTTAACATTATTATTTAAAGAGGAGAGAAAAGTTAAAAAAATAATAAAAGAATAAGATTATTAGTTTGGCGAAATAAAAGCCAATGGGTTTATAGAGATATTGGATTAAAT


Gene Sequence:
>Vu_05481(+)
TACGCGAGGACACGAAAGTGACTTTTAAAACCTTCGTCGTTGCTCTTCTCTAATTCTTCCTCTTTCTCTTATTTCTTATTTCCGCAGAATCTTCGCGTTCTGAAATTTGCCTACATCCACTTTCCTTATTTTCTCTTTATCATTCGGAATCTCACTCTCTTCCTTTCTCATTCCTATTTATTTCTTCATCCCTTTCCTTTACCCTCTCCTCGCTCACTGTTTCTTCATTTTTTTTTCTCCTGCAAGCAAAAGCAAAATCTGAATCTGAAGAGAAAACACGATCCAATGGGTTCGGTTCTGCCAGAACTGAGCTTGGATTTAAGACCCTCTTTTGTCCCTAAAACCATCACCGATTTTCTCCGTCACCTCTCTTCCGCCACCGACAGACTCGCCACTCTTCACGATTTCCTGTCTCGCTTGGAAGACGAGCTCCGCAAGATCCACGCCTTCAAGCGCGAGCTTCCTCTCTCCATGCTCCTCTTAAACGACGGTTAGTTTACTTCCGTTTCTATTTTCTTTGTTTCTCTCTCTTCTTTCTCCTAATTCATACTTTCATTTCCTTTCTGCCACAGCAATTTCACTCCTCAAAACGGAATCGCAGAAATGCCGGCTGCGTGATTCTTCACCGGTGTTGGAGGAGTTCATCCCTTTGAAGAAAGAACGTGATCGGAATGAAGGAAATAACTATAATGATAATGACATGGATAACGAATGCAGAGATAAGAAGAATTGGTTGAGTTCGGTGCAGCTTTGGAATAACAGTACTACTAATAACTATGCATCTGATCGGAAACATCAACAACTGCATACATTAGAAAATAAGGTTTAATAACTAGAATACCTCGCCGTTAGTTATGCTGTATTGTTTGTATTTCTAGTGTTGTTTTTCCAATCACAATTTGAGCGGCAATCACCTAATTATGCTTGGATAGAAACGTGATTTACCATTCTGAGATTTTTGACATAAAAATGGAAAGAAAGCAATAGGTGGATGCACGGAGATTTTTGTTTCTGATTATCCTTGTTCAAGGAAACAGGAACTAATGCTAAAGAGTGTTTCTTTTGTTGGTGGTGACAGAAAATTGAGGAAGGGCAATCTGTTGGTGAGGATCCTTTTCAGTCGTGCAGCAATAGAAATGGGGGAAGAAGGGCTTTTATGCCTTTCTCCAGGTACTCTTCTTCTTCATCTTCTGTGCCGGTGGCAACGGCGGGACTGGCTGCTGCAACCAAAGAAGAGAAGGAAGAGAGTGTTATGAATAGGCTTTCCCTTCAGACCCCTTCTGTGAAAGAGGGGTGTGGTTCAAGGGGATCCAGAAGCAGTTCCAGTAGGGCTGTTTCTTCTTCTCCTCCTACGGTGCACCCCAGTTTGAGGGCATCATCGCTTCAGCAGACTGCGAGAAAACAGAGGAGATGCTGGTCCCCTGAATTGCACAGACGATTTGTTAATGCTTTGCAGAAACTAGGAGGTTCCCAAGGTAAGAAGTTGATTTTTTATTTGTTTGTTGTTTATTCAAATGATATGAAATTGAGTTTTGATCTATGTATATTTCACTTTCTTAATCTAGAAATGTCATGTTACTTTATATTTCTGATACTGGTTTTCATAATAAAAGACTCAATTTTTAATCAATTCAGATACAATAGGTCAGTAGAAAAGTCCAAGAATTGATGCTGGAATTTGTTAAAATTATAGATGTTGGTTGAAGTTAGGTAGTGTTTGTTCTGTTAGTTCACGTGTAAAGTTGTTACTTAAAGTTAGATCAGGAGATACCATAGGAGTTTACAAATGTCGTCTTATCTGCAATCAGTAGGTTCATTAGGTCAAAACTAAATTATTCATCTCAGAAAACACGGATTTGAAAGGACATGCTATACTGAACCTTGTTTTGTTCTTTTGTTATGTCAATTGCAGCGGCAACACCAAAGCAAATTAGAGAGCTGATGCAGGTTGATGGCCTGACTAACGATGAGGTGAAAAGTCACTTACAAGTGAGTTTTTAGCATTCTTTTGGTCCCTTTAATTGGGGAAAAGTTTCAAGCAAAGATTTTAATGTGTCATGGAGTTTGGATCAGGATTGATGATTGGTTACGTATGATTGCAGAAATACCGACTTCATACGCGGAGAGTTCCAGCAGGAAGTGGTAATCAGCCAGTTGTTGTTCTTGGAGGTTTGTGGATGTCTCAAGATCAGTACAACGACTCCTCAAAAGTTAGCAGTTCAGGGTCAGGTTCTCCTCAAAGTCCCCTTCATTTGACTACAGGGTCTCGAGGAGGAACGTCCCCAACTGAGGGTGACAGCATGGAAGATGATGAAGATGCAAGATCCGAGAGTTATAGTTGGAAAAGTCATATGCAAAAACCTGGAAAAGTTGATGTATAGGATACTATTCTCCACCATGAATTTTGCAGATAAAAGTATACATGGGAGGAGTTTTACGACTACATAAGAATAATACATGATACATATAAAAGAGGGTCAACGAAAAGAGGCTGTTGGAGTTTCTGAAGGTTTAGCTTGTCTTCTATACTGAGTGAGTTTTGATATGGGACTCCCAATTAAAATATCCTTTCTCTTCACTTTGAGAAGCTGGTCATTTTTTTCCATACATTAAAATTCTTTCATTTCCTTCTTTTGTCACGAGAATTCTCTGATATTTAGATGGGTTTCTACATGTTTGGCTGGGACATTGGCTTCTCAACTCACTCAACTGTTTCTTATACTTTTATTTGCACAAATGTTTCTCTTCACAAACTCAGATATATTTTCACAATCATTCCTTTTCTCCTCGTAC