Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_05537 LG1 82981299 82982654 PREDICTED: transcription factor bHLH93-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of gibberellin biosynthetic process, gibberellin catabolic process, gibberellin catabolic process, regulation of transcription, DNA-templated, regulation of gibberellin biosynthetic process, regulation of transcription, DNA-templated, gibberellin catabolic process, regulation of gibberellin biosynthetic process, regulation of gibberellin biosynthetic process, regulation of transcription, DNA-templated, regulation of gibberellin biosynthetic process, gibberellin catabolic process
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, sequence-specific DNA binding, DNA-binding transcription factor activity, protein dimerization activity, DNA-binding transcription factor activity
SNP Position Effect Amino acid change
G/C 82982310 intron_variant
C/A 82982397 synonymous_variant p.Thr272Thr
G/C 82982560 splice_region_variant&intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_05537.1
MELSQLGFLEELVAPRRETWNALSSGFLELLSNGWSFDTFLDNPSFPSSNTLFGAFSAPLDRRFECPFTNELPPYPFPDAFTMPLPDLQPGNDHPSPPLPPTLEDADIAFYHNNNNNFQEIKTVCKVEEHGVENPQPTEIPLFNTAMSDDGERKHKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIEYMKELLERIGKLQEEEVEEGSSQINLLGISRDQLKPNEAIFDVERRDQDTRISICCATKPGLLLSTVNTLEALGLEIQQCVVSSFNDFSVEASCSEVGEQRNSISPEEIKQSLFRNAGFGGKCL*


CDS Sequence:
>Vu_05537.1
ATGGAGCTTTCTCAGCTTGGTTTCTTAGAAGAATTGGTAGCTCCAAGAAGAGAGACATGGAATGCTTTGTCCAGTGGGTTCTTGGAGCTATTGTCTAATGGTTGGAGTTTTGACACTTTTCTTGATAACCCATCTTTCCCCTCCTCTAACACCCTCTTTGGTGCATTTTCAGCACCATTAGACCGCAGATTTGAATGCCCTTTCACCAATGAACTACCACCATACCCATTTCCCGATGCCTTCACAATGCCATTGCCAGACCTTCAACCTGGCAACGATCATCCCTCACCTCCACTTCCACCCACACTCGAGGATGCAGATATTGCCTTTTATCACAACAACAATAACAACTTTCAAGAAATCAAGACTGTCTGCAAAGTTGAAGAACATGGTGTTGAGAATCCACAACCCACAGAGATTCCACTCTTCAACACAGCCATGTCTGATGATGGAGAGAGAAAACACAAGTCCAAAAAGCTAGAGGGACAGCCCTCAAAGAATCTCATGGCAGAAAGGAGGAGAAGAAAGCGTCTCAATGACCGTCTTTCCATGCTTAGGTCAATAGTCCCCAAGATCAGCAAGATGGACAGGACCTCTATTCTTGGGGATACTATAGAATACATGAAAGAGCTTTTGGAAAGGATTGGCAAGTTGCAAGAAGAGGAGGTGGAAGAGGGCTCAAGTCAGATTAATCTGTTGGGCATTTCAAGGGACCAACTCAAACCAAATGAAGCAATTTTTGATGTTGAAAGGAGAGACCAGGACACTAGGATCAGCATTTGTTGTGCCACAAAGCCTGGATTGCTACTATCAACCGTCAATACATTAGAAGCATTGGGCCTTGAGATTCAGCAATGTGTTGTAAGCAGCTTCAATGACTTTTCAGTGGAAGCATCTTGTTCTGAGGTAGGTGAACAGAGAAATAGCATTAGCCCTGAGGAGATAAAACAATCACTATTCAGAAATGCTGGGTTTGGTGGGAAATGTCTGTAG


Promoter Sequence:
>Vu_05537::LG1:82979299-82981299(+)
ATATTTTCTTATGTTGTTTATTTTTGTTTTCCCTATAACTATTTTTTTTCTCTGATACTTATATGATTTTCTCTAATAATAATTTGATATGTTCTAATGCAATTATTTTTTATATACTCTGATACTTAGAATTTTTTACATGCTCTTATGCTTATATGTTTATTTCATTGATGTGATATTTCTCTTACTCTGGTTAATTAATTATGCATTTATGCTTTGGTACATTCATTTTTACATTTTCTCTAAACAATGATTTATGACTTATAGGAAGTCATTTATCATTTCATTCTCTTATTGAATACATGTTATATGCTCTTATATATCATGTGCATAAATGACTAGTATGATAGAAATCGCTCTGATCAATTTTGAATATCCATCACATAAGCTGATATAGACGATTAGTTAAATGTTCTACTATAAATAACTGATATACTAAATGTATAAAAGACTAGATAAACTACTAGCATGATAAAGTTTATATGATCAATTTTGTCTTCTTTCTCTTATGCCTATTTCGCATTAGTATAAGTATTTGTTAAACATAAAAATGGAAGAGATTGTTAATACAAGATTGTCTAGGAACCCTTTATTTTATAGTTTAATAAAAGCATTTATAAAAGTGATCGTCTAGGATAACGAGCTAAACGCTATATATGATTAAACAAAATCTTGAATGCAATGTCTATCCTAAAGGCTAAAGAGAATAGTCTAGCATAAATATAATAGTTTACTCTAGACGCAACGATTTGATAAATAGACTAGCATAAATGTTATAGTACATGGACCTTGCTAAATGTTACAATGAACGCCTATAGTTTTAAATCCAAATGTATGAGTAGTACTCATTTGTCCGTTTCTCTTTATCTAATGTAGATACATGAAAGATTAATGTTTTATTCAAAAGTTCTACGCTGGTTCAGAAGAACATTAAGAGATGCGAAGACATTCTTGGAATGTTTCTTCAATGTCTTTTGTTTGCCTAATCTATACAAGCAACACAGTTGTCTCTACAAAAGCAAAATAGCATTTGACCTAGTACAAAATGCTACAACATCTACATCTAAGTTAGTGCTTCTGAGTAATGAATCTTTCTTAAAGTTGCCTGTATAAAGAAGACTTTATGAAGAGAAGAAAAATAACTAATTGCATATAAAGAAAACTCTTTGTAATAAGTTTTCAGATAAACTTTATATTGATTTAATTCCTCTCTAAGAGAGCTTATCAATATGTTCTTGTTTTAAAATCATTTTGTTTTTTTAGATAATCAAAACTTATTTAAAACACTTTGTTATTTAATTATGGGGGAGTTAAACATTATAGTTAGTTGGATTATTTTATACTAGAATTTGTAAAACTCGTTGTCTTCTAAAAAATAATAAATCCTTTAAGAGTATTTAAAGAAGAACTAAAAATAACTCAATTGAAATGAACTAGTATAAAAACAAGTTTTTGTTTACTCACTTTCTAAGGGTTTTTTGAAACATTCACAATCAAGCAAAGTTAAAATTTTCCCAATACCAACTCCTTAAACTTCTATAATAAAAATAAAAGCTTGTAAATAAAATAAATTTTATAATTTAAATAAACCTTTTTAATTATTTTGAAACTATAGTTAATGAAATATAGGAATAAGAAGAAAAAGAGGTATAAAGACGATGGTTGAACATGCTAAAAAGTATTACAAATATTTGGAAAATAAATTCAGACGTCTAATATTTTTTCTTGGCTGGTCAAGAATAACTACAAGATGATGCTTCCCTTCATTTATATATATTATAAAGTATATTCAAAATATATATTAATATATTTCAAAAAATAATTTATAAATAAAATTTAAAAGTTATTCTATGTAAAAAATAAATTTCAGTTGAAAGGAATGTAGACACCGATAGTAAAAAGCTTGGCTTACTGACCTAAAATGTAAATAATATTTTGAAGTTGGGAAAACATTATTAGTTGGTGAGGTCACAGGGTGAGAGAGTGAGAAAGAAGAGAGA


Gene Sequence:
>Vu_05537(+)
ATGGAGCTTTCTCAGCTTGGTTTCTTAGAAGAATTGGTAGCTCCAAGAAGAGAGACATGGAATGCTTTGTCCAGTGGGTTCTTGGAGCTATTGTCTAATGGTTGGAGTTTTGACACTTTTCTTGATAACCCATCTTTCCCCTCCTCTAACACCCTCTTTGGTGCATTTTCAGCACCATTAGACCGCAGATTTGAATGCCCTTTCACCAATGAACTACCACCATACCCATTTCCCGATGCCTTCACAATGCCATTGCCAGACCTTCAACCTGGCAACGATCATCCCTCACCTCCACTTCCACCCACACTCGAGGATGCAGATATTGCCTTTTATCACAACAACAATAACAACTTTCAAGAAATCAAGACTGTCTGCAAAGTTGAAGAACATGGTGTTGAGAATCCACAACCCACAGAGATTCCACTCTTCAACACAGCCATGTCTGATGATGGAGAGAGAAAACACAAGTCCAAAAAGCTAGAGGGACAGCCCTCAAAGAATCTCATGGCAGAAAGGAGGAGAAGAAAGCGTCTCAATGACCGTCTTTCCATGCTTAGGTCAATAGTCCCCAAGATCAGCAAGGTGATTTCCAAAACGATATCTTTTGCTTTCTTTTAACCCTCACTTTTCCCCACTAGTAATATCTGAATCAGTATAAACAAAATTGGAATTCTCATGTTTGGCTTACATCCATAACATGATCCATGCTTGGTTTGTTTGTTTTCTTGATTTTGCTGTGTGACACACTGAACTGAGCAATATCAACTTTTAACAGATGGACAGGACCTCTATTCTTGGGGATACTATAGAATACATGAAAGAGCTTTTGGAAAGGATTGGCAAGTTGCAAGAAGAGGAGGTGGAAGAGGGCTCAAGTCAGATTAATCTGTTGGGCATTTCAAGGGACCAACTCAAACCAAATGAAGCAATTGTAAGAAACTCCCCCAAGGTACTCTGCCAAACCAAACCCCTGACTTAAAGCATTATCACAGACCCACTTTCTCAATAAATGTATTTGCAGTTTGATGTTGAAAGGAGAGACCAGGACACTAGGATCAGCATTTGTTGTGCCACAAAGCCTGGATTGCTACTATCAACCGTCAATACATTAGAAGCATTGGGCCTTGAGATTCAGCAATGTGTTGTAAGCAGCTTCAATGACTTTTCAGTGGAAGCATCTTGTTCTGAGGTCTGTATTCTATTTGGTCCCTTCAATCTTAATTGCATGCTTGAAACTCTACCGTAAACTTACTCTTTTCGTGGTCATAGGTAGGTGAACAGAGAAATAGCATTAGCCCTGAGGAGATAAAACAATCACTATTCAGAAATGCTGGGTTTGGTGGGAAATGTCTGTAG