Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_05566 LG1 83457457 83461689 PREDICTED: zinc finger CCCH domain-containing protein 12
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, positive regulation of DNA-templated transcription, initiation, regulation of transcription, DNA-templated, positive regulation of DNA-templated transcription, initiation, regulation of transcription, DNA-templated, positive regulation of DNA-templated transcription, initiation, regulation of transcription, DNA-templated, positive regulation of DNA-templated transcription, initiation
Cellular Component   located in   nucleus, nucleus, cytoplasm
Molecular Function   enables   DNA-binding transcription factor activity, mRNA binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding
SNP Position Effect Amino acid change
G/C 83457518 3_prime_UTR_variant
G/T 83457540 3_prime_UTR_variant
T/C 83457778 3_prime_UTR_variant
T/G 83457849 3_prime_UTR_variant
G/A 83457867 3_prime_UTR_variant
T/A 83457928 missense_variant p.Lys353Ile
A/C 83458242 upstream_gene_variant
A/T 83458243 upstream_gene_variant
A/T 83458472 upstream_gene_variant
G/A 83458839 upstream_gene_variant
A/T 83459086 upstream_gene_variant
T/A 83459102 upstream_gene_variant
A/T 83459363 upstream_gene_variant
C/T 83459364 upstream_gene_variant
C/A 83459367 upstream_gene_variant
A/C 83459417 upstream_gene_variant
G/A 83459418 upstream_gene_variant
G/T 83459584 upstream_gene_variant
G/A 83459651 upstream_gene_variant
C/T 83459790 upstream_gene_variant
T/G 83460027 upstream_gene_variant
A/T 83460120 upstream_gene_variant
A/T 83460280 synonymous_variant p.Ala238Ala
A/C 83460616 synonymous_variant p.Val126Val
G/A 83460685 synonymous_variant p.Ile103Ile
C/A 83460746 missense_variant p.Gly83Val
T/A 83461175 5_prime_UTR_variant
A/G 83461209 5_prime_UTR_premature_start_codon_gain_variant
A/G 83461264 splice_region_variant&intron_variant
C/T 83461387 intron_variant
G/C 83461476 intron_variant
G/A 83461480 intron_variant
A/C 83461485 intron_variant
T/A 83461486 intron_variant
C/T 83461490 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_05566.1
MDYARDGNVVQIITGGGGGGESWSSDQADWATEDEYRYWNNNNNNGDAESTPSNSNYESRSEPPSKKSRNSQDGSSNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEEKAVMAEPREEFQIPTVGSSTFAGDTMQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYAGGGGGGSGGSGSGGGGGSGNGGGGGGSGGANAAGNGANSKPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHRYGGGLMEGESRDGVSVVGCDTNKGAASKASADNVVAAVTPVAHSDVYHIGVPSQRPSIVIQRPGQRTHQKWKGPDKISRIYGDWIDDIE*


CDS Sequence:
>Vu_05566.1
ATGGATTACGCTCGAGACGGGAACGTGGTTCAAATAATCACGGGCGGTGGCGGAGGAGGAGAGAGCTGGTCCAGCGATCAAGCCGATTGGGCAACGGAGGATGAGTACCGGTATTGGAACAACAACAACAACAACGGAGACGCGGAATCGACGCCGTCGAACTCGAATTACGAGTCACGGTCGGAGCCGCCTAGCAAAAAGTCCCGGAATTCGCAGGATGGCAGCTCAAACCGCTCAAAGGCTATAGGGAAAATGTTCTTCAAGACGAAACTGTGCTGCAAGTTCAGGGCAGGGACCTGCCCTTACATCACCAACTGCAATTTTGCCCATAGCATTGAGGAGCTACGCCGCCCGCCACCAAATTGGCAGGAGATTGTTGCAGCACACGAGGAGGAGAAGGCAGTGATGGCAGAGCCAAGGGAGGAGTTTCAGATTCCCACTGTGGGGTCTTCCACCTTTGCAGGTGATACGATGCAGAGGTCCTACAAGGGAAGGCATTGTAAGAAGTTTTACACTGAGGAAGGGTGTCCCTATGGGGATAGTTGCACCTTCCTTCATGATGAACAATCAAAGAACCGAGAGAGTGTTGCTATAAGTTTAGGCCCGGGGGGTTATGCTGGCGGTGGTGGTGGTGGAAGCGGTGGCAGTGGTAGTGGTGGGGGCGGTGGAAGTGGAAATGGTGGTGGTGGTGGTGGTAGTGGTGGTGCTAATGCTGCTGGGAATGGGGCTAATTCGAAGCCCTCTAATTGGAAAACCAGGATTTGCAATAAATGGGAGATGACAGGGTATTGCCCCTTTGGCAACAAATGCCATTTTGCTCATGGTGCCACAGAGTTGCACAGATATGGAGGGGGGCTTATGGAAGGAGAAAGCAGAGATGGTGTTTCAGTGGTTGGCTGTGACACGAATAAGGGAGCAGCTTCAAAAGCTTCAGCTGATAACGTTGTTGCTGCGGTTACTCCTGTTGCCCATTCTGATGTATACCATATTGGAGTCCCTTCACAAAGGCCTTCCATTGTGATTCAGAGACCAGGGCAGAGAACTCATCAGAAGTGGAAAGGTCCAGATAAAATCAGTAGGATATATGGTGATTGGATTGATGACATTGAATAG


Promoter Sequence:
>Vu_05566::LG1:83461689-83463689(-)
GGAAATTTGGTGCATATTTGAAGCTTTCCTTTCCTATAAATAAGGGGCTTTTATCCTTTGTAAAAAACTTTTGAGGCAAGTAATGAAATGATAAGGGATTTTCCAGCCATGCTTGCTTTTTAGTATGCTCTAATTCAGAGTTCTTCTTCTTTTCCTCTAGCTTCCTTCCTTAGTAGGAAGGTTATATGAGCTTCAGGCACTATACACACATCATATTTCATCATTTGCACCTTCAACCACTTCAATTTTCATCTATTTTGTTGTAATATCAACAATATTCGTTGCATCTATAGCTTCCAACATCTGGAATTGAAGTTCTAGACCAAGGAGGCTTCCATCAATTAATTTCTTCTATGCATCCTCTACGAGTTGATGTTGTAGGTCTTCTCCTTTCATCATGTGATGAGAGAAGAGTGGAACTAACCTTGAGCACAACAAAGAGAAGAAGACGACACGAGAGGAAGACGAGCACAAAACACCACCATCACACATGCACACTGGAGAAGATGCACAATATAATGGGAAACCAAGAGAAAAGAAAAAAGGGAGGTGTGAGGGAGGACGAAGAAACAAGGAAGGTGCGAGAATGAGGGAGAGTGGGGAGGAGATATATAGGGGTGTAGGGTTTCAAAAATTTTAAAATAGGACATAGAAAAATCATGGTCAAAGATTCTCATTTCTCTATTAGAAAGGTAAACAAGATATTAAGAAAAAATTGAAAGTGCAAGACAAGATTGTAGAGGTGTAGGAAGAACGTCCTATGACCAAGTATAGTGAAAATATGGAAGATTACACCTATGAGATTTAATGGAACTGAGTGTATTTTTAGTAAAGAAAAAATTATGATAAATAAAAAATATTCTTAATGAAATCTATAATTTTTTTAATGTTTTAAATTTGATTATATATATCTAAATCATAAGTATAAGTTTTAAGTTGAAATATATAATTAAGATCAAATATGGATACTAATATAAAAATATATTTGATTTTGCCTAGTTTAGATATAAGAAAAATGAAATCTTTAAAATTGTTGTAGCATTTTTTAAATAATAAAAAACATTTATACTCCGACTCTAACCGACTTGTTATCACATACATACATTGGAGATACTAATAAAAGAAGTTAAGTTATAAATTTTTAAGAATATACAATCATATACAGATAAATATGATAGGTGGATCGACTTGTTATTTTATGAAGACTTCCTTCTTCTCTTCTCTTTTTCTTTTATATGTTAGTATGAAATTCCTCTCTTTTCTTTGTATGTTAGTGTAAAATAGGGTTATCTACTCCATGTTTTTTTTATTAGTAACCACTTTATTCTTTACAACTAAACTCCATTTTTTTCCTTTCTTTTCTCATCATCAAATATTTATATCAACCAATAATGTTAAGAAAAAAATTAAAGTGTTATAAGAATGAAGAGCCTTTAAATGAATACTCTTTTAATGCTAAAGATGAGAGATAGTCTTATTTTTCATTTTTTTCAATTATTTTTTTCCTAAATTCAGATATTGACATATGATAAATCGAGTGGTCCTCTTGTATATTATTTGACATGGAAACAATTTTCTACCCTTAGATATATTATTTTTAAGAGAATCTACGTTTCTATACATTTTTAAGAGAGGCAAAAAATTCCTTATTCTTTGTAAATACTTAATAATCTTTTTAGTAATATTAGAAAATAAATAATATTTAAAATAAAGTTTTGTTTATTGATGATGTAGAAGAAAATACTCCATTTACAAATTAAAAATAACATTTACTAGCTTTTCCCGATTATATCTTTATTCTACTTTACGAATATATTAACTAATATTTTTTAATGAACATGCAGATAACTAAAACAATTACACACGTAACGAAACAATGCATAACTAGAGAAATAATAATCTTCAGAAGAATTAATTGATATATACAATCATAAATAATATTATTTAATATTTGAAATTTAATGTGCATAAGTAGCACCAGATATATATAGATATGAATG


Gene Sequence:
>Vu_05566(-)
GACAAACATTGATCAGCGGAATACTGACAACGTCGTCAACTCTCAAACTCATTTCATTGTTAGAGAGACAATCTTAGCCTTAGAAAAAAAAAATACAGAGTTTCTTCAGTTCCTGTTGGTTCACACGAAATTCTAACCAGGTACCAAAAATTCTGAAACACATCCCAGTTCGAACCACTTTCCTAGATTGCATTGTTTTGAGAATCTTTCTTGCTTACAAATGTTCAAACTAATCTTCGTATCAGGTTTATGACAGTTTTTTGTTTTCATTTTTCTTGTTATCACAGATCTAGTTTCAGTTGGTGCCATAAATTAAACTATCTTTGTAGGGATTAAGTGAATCTTTGTTACAGACTTCTTTTTCTTACAATTGTATTTTTCTCATCATCCTATCTACAAGATCTGTCTGATGTTTCGAGATGTCTTGAACAGGATTGTCTCGAACATAACCAAGATTATCTTGAATACTTTGAGATAAGATTGTCTTGAAGAAGATAGTCTTGTTAGAACTAGAAAAGAAACCGTTGATTCCATTTCCTCAGCTGCAGCTGTGTTGGGGGCACTCCTAGGTAGGTGTTAGTTTCTGCGAATCACCCTTTTCTCAAATTTTCTATAACCTCCATTTCCGAGGACGAACAATACAGAGACAGAACTCTGAGGTCAAAATCTGATTAGGGTTTTGCCTCGTTTGGGACAATGGATTACGCTCGAGACGGGAACGTGGTTCAAATAATCACGGGCGGTGGCGGAGGAGGAGAGAGCTGGTCCAGCGATCAAGCCGATTGGGCAACGGAGGATGAGTACCGGTATTGGAACAACAACAACAACAACGGAGACGCGGAATCGACGCCGTCGAACTCGAATTACGAGTCACGGTCGGAGCCGCCTAGCAAAAAGTCCCGGAATTCGCAGGATGGCAGCTCAAACCGCTCAAAGGCTATAGGGAAAATGTTCTTCAAGACGAAACTGTGCTGCAAGTTCAGGGCAGGGACCTGCCCTTACATCACCAACTGCAATTTTGCCCATAGCATTGAGGAGCTACGCCGCCCGCCACCAAATTGGCAGGAGATTGTTGCAGCACACGAGGAGGAGAAGGCAGTGATGGCAGAGCCAAGGGAGGAGTTTCAGATTCCCACTGTGGGGTCTTCCACCTTTGCAGGTGATACGATGCAGAGGTCCTACAAGGGAAGGCATTGTAAGAAGTTTTACACTGAGGAAGGGTGTCCCTATGGGGATAGTTGCACCTTCCTTCATGATGAACAATCAAAGAACCGAGAGAGTGTTGCTATAAGTTTAGGCCCGGGGGGTTATGCTGGCGGTGGTGGTGGTGGAAGCGGTGGCAGTGGTAGTGGTGGGGGCGGTGGAAGTGGAAATGGTGGTGGTGGTGGTGGTAGTGGTGGTGCTAATGCTGCTGGGAATGGGGCTAATTCGAAGCCCTCTAATTGGAAAACCAGGATTTGCAATAAATGGGAGATGACAGGGTATTGCCCCTTTGGCAACAAATGCCATTTTGCTCATGGTGCCACAGGTACAACCCTGTTTCCTTTCGCTGTTTTTACGATCTTCTTTTCCTTTTTCAGTGATAATTGAGGGATCGTTGTGTGCTGTGTAAAATGCTTCTAGAATTGGAAATATTTTGGATTGTTGCTGTCATTTCTCATTATGAAGTGTATTCATGTTATTTGGATATAGAATCTGTGTTGATGGCACTTGATGTTAGATTGCTTTGTGTTTATGTATTATTCAATCTTGGATTTTATTTATTCATTTTATGTGGTTAGTATAGCTATAGTTCCTGCTGTTCTTATTTTGAGTATGCCATAAATACTGGTGTCAATTATTAATAATTTGATATCCAAGTGTTGTATCAAGCATATCATCAAAGTGTGTGTGGCAGCTGGAGTAATCCTTGCAATATTTTGTTCCAGCATGTTTGCATGTCAGAAAATCACGCTTGTGCACAGGGAAATGCATGGTTCCTTTTACTTCTACACAATGAAAGGCATAACAAACTCAACCTACAGCAAGAGAGAACTTTCGGGTTTTGAAGTGTGGAAATTTGGCCTTCTCTTTTTCCGAAGTATCTATCATTAACTATGTGTTCCCTTATTTGAGATTATTGATACTTTTTCTGTGCCTTGTATGCTTCAATATCTAAGGTTTATTTTTACTAAAATAAATGAGAGATCAGAAAGGCATAGGTTCTTAAGTAGCAGGTTCAAAATGAATAAAGGGTGCTGCTTTACATCCTTGTAGCTCTCAGAGATATAGCTTTGTAGATGGAATTGAAGCAAAATAATGTAAGATGGAACTTTTGTAACTGCTGTGTACGCAGTGGAAGCACACTAAGAGAAATGAAACTTTGTTAAACTATACTTGTCCGTTGACATACTTACAAATGTGAAGAAGCTGATTAGGTAACCACTCAAATGGTGGGTTCTCTCCAACTAAATAGTACTATTCTTGAGAAACTGTTATGCTAGGGCTTGAGAAACCAGAAATGCAACGAATGATTTATATTTGGCAACCTAGATTCCACTTGCATCAGCATATTTAGGGACCATACACATTGTATTGAAATACATTTATAGCTTCCATGTCAATAAATTTTGATTGTGTTGCTTTCTGATTTTATACAATTTAAATGATATGACATGAAAAATTGGAAGCACTTGTGAAGGTTATAATTAGAGAAATTCTATTCTTCTCTCTGAAATTTAAGGGCTTTGGTAATGTTGTCGAGAAACTGTCACTCCCTCTTTCTCTGGTTTGCCGAAATCCATTCAACTGTTGGACATGGACAATTGTACCAAAGTCCTAATTTATTTGGGTATCGTAGAATATGTCATCCAACTAACGTAGTAATTTAGTATATACCACCTCTGGTTCTATGTATAAAAAAAAACAAATACCTAACTCATCAGAACCAATAAACATAGTTAAGTTAGTTAATTTTAATTAATAATGTCAGAGATTAAGATGTATTCAAGAAACATGTATAGAATTAAACGATTGAAGTGTTTGGTTATATTCAATGATTTTTCTCAGAATTCAAGAAATAAGTTTTTTGAACCAATGGGAGTGATTATTTTTGTTGATAACTCAATAAATGCATCCACACTTATGGGGAATGAGTGCATAACTCATTAATAGACTCTCCAATAAACTAAGGTATAAAAACAAATTAGTAATAAAACATTTGGAAATGGTTCTATGTTTCTCATAAAAAGGATAAAAAAATTGTCCTCATCCGTTTCTTAAATATAGGACTAGAAGTACAAGTAAATACAATTGGAATGCAGAAACATGTTGGAAATATACACTTACTCATGCTGTATTTATTTATTTTTACATCTAAATGTTCATCCGCCATCATTTTAATGTCTGCCTGAGAATGCTTATATTTGTATTTTTTCTTGGATGTTGGCACATATACAAGTGTGTTGTTGGCTTGAATTGATTATCTATCAGATATGTGTTTAGTAGTAACAAGTATCGATTTTCACACTCATCTTACTCTGATATGGTGATCACAGAGTTGCACAGATATGGAGGGGGGCTTATGGAAGGAGAAAGCAGAGATGGTGTTTCAGTGGTTGGCTGTGACACGAATAAGGGAGCAGCTTCAAAAGCTTCAGCTGATAACGTTGTTGCTGCGGTTACTCCTGTTGCCCATTCTGATGTATACCATATTGGAGTCCCTTCACAAAGGCCTTCCATTGTGATTCAGAGACCAGGGCAGAGAACTCATCAGAAGTGGAAAGGTCCAGATAAAATCAGTAGGATATATGGTGATTGGATTGATGACATTGAATAGAGTTACACTCCCAGTCATGGATGAAAGAAACCAACCACTGATGAGGGCTTATGTACCATGAAGAAAAGTGAATACGCAATGATTTTTCATTCCCATGTTATATTTTTATTAGCTAATTTCTTTTATGATCCTTAACTTGTAACGGGAAAAACAGTTTAGTTGGTTTCACGGATAACTGTCTTGTACGATTATGTTTGCTGGTGTATTCACCTTCCTTAATACGCTGGTTCTCTGGTGTCTGAATGTGGCAGCAGCTTCCATGTACTTGCATCAGATAGTATGGCATAGTTGTTATTTTAGGTAGAACTTGTTCATTAGGATTGTTTTCCTCGCCTTGTTCACTTGTAATGAAAACCATTTTAGAATTTCCAAACAATAGTTCTGTGAATTGAAATCACTAAAATTTTGAGTAGTTC