Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_05580 LG1 83641421 83646546 PREDICTED: probable transcription factor KAN2 isoform X1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   carpel development, plant ovule development, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, plant ovule development, polarity specification of adaxial/abaxial axis, regulation of transcription, DNA-templated, carpel development, carpel development, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, carpel development, plant ovule development, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, plant ovule development, abaxial cell fate specification, abaxial cell fate specification
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding
SNP Position Effect Amino acid change
T/A 83641427 3_prime_UTR_variant
G/C 83641460 3_prime_UTR_variant
A/G 83641465 3_prime_UTR_variant
A/G 83641605 3_prime_UTR_variant
G/A 83641611 3_prime_UTR_variant
G/A 83641752 3_prime_UTR_variant
C/G 83641913 missense_variant p.Gly319Ala
C/T 83641987 splice_acceptor_variant&intron_variant
A/G 83642031 intron_variant
C/T 83642037 intron_variant
C/A 83642082 intron_variant
G/A 83642144 intron_variant
C/T 83642251 intron_variant
C/A 83642377 missense_variant p.Val293Phe
A/G 83642378 synonymous_variant p.Ser292Ser
T/C 83642640 intron_variant
T/G 83642701 intron_variant
C/*,A 83642704 intron_variant
T/C 83642805 intron_variant
T/A 83642835 intron_variant
T/A 83642876 intron_variant
C/A 83642885 intron_variant
G/C,T 83642893 intron_variant
C/T 83642900 intron_variant
G/T 83642917 intron_variant
G/C 83642939 intron_variant
C/G 83642941 intron_variant
C/A 83642968 intron_variant
T/G 83643012 intron_variant
A/G 83643033 intron_variant
G/C 83643045 intron_variant
T/A 83643063 intron_variant
A/T 83643069 intron_variant
T/C,* 83643086 intron_variant
A/G,* 83643102 intron_variant
C/A 83643159 intron_variant
T/G 83643210 intron_variant
A/G 83643221 intron_variant
T/G 83643327 intron_variant
T/C 83643374 intron_variant
C/T 83643383 intron_variant
A/G,* 83643390 intron_variant
C/G 83643422 intron_variant
A/G 83643584 intron_variant
G/T 83643656 intron_variant
C/G 83643683 intron_variant
A/C 83643736 intron_variant
A/G 83643755 intron_variant
G/A 83643840 intron_variant
A/T 83643854 intron_variant
T/C 83644000 synonymous_variant p.Thr256Thr
T/C 83644094 missense_variant p.Tyr225Cys
A/T 83644143 intron_variant
T/A 83644144 intron_variant
A/T 83644166 intron_variant
C/A 83644189 intron_variant
C/A 83644225 intron_variant
G/A 83644265 intron_variant
A/G 83644293 synonymous_variant p.Asp213Asp
G/A 83644357 intron_variant
G/T 83644371 intron_variant
A/C 83644545 intron_variant
A/G 83644557 intron_variant
C/G 83644565 intron_variant
G/C 83644608 intron_variant
A/G 83644634 intron_variant
G/A 83644792 intron_variant
C/T 83644900 intron_variant
T/C 83644931 intron_variant
T/C 83644976 intron_variant
T/A 83644981 intron_variant
T/C 83645183 intron_variant
C/T 83645252 intron_variant
G/A 83645334 intron_variant
C/A 83645359 intron_variant
C/T 83645547 missense_variant p.Asp190Asn
C/T 83645548 missense_variant p.Met189Ile
A/T 83645631 intron_variant
T/C 83645644 intron_variant
G/A,* 83645702 intron_variant
G/A 83645750 synonymous_variant p.His177His
G/A 83645859 missense_variant p.Ala141Val
G/T 83645889 missense_variant p.Pro131His
A/G 83645909 synonymous_variant p.Asn124Asn
A/T 83645934 missense_variant p.Ile116Lys
G/A 83645990 synonymous_variant p.Asn97Asn
G/A 83646081 missense_variant p.Ser67Phe
A/G,* 83646099 missense_variant p.Phe61Ser
G/A 83646274 synonymous_variant p.Leu3Leu
C/T 83646281 5_prime_UTR_variant
T/A 83646298 5_prime_UTR_variant
G/C 83646404 5_prime_UTR_variant
C/G 83646407 5_prime_UTR_variant
G/C 83646408 5_prime_UTR_premature_start_codon_gain_variant
A/G 83646410 5_prime_UTR_variant
T/A 83646415 5_prime_UTR_variant
C/G,T 83646448 5_prime_UTR_variant
G/C 83646474 5_prime_UTR_variant
C/T 83646476 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_05580.1
MELFPVQPDLSLKINPPNTKPTSSNWNKRSTEDEMDLGFWKRALESKTVKTDLSLSNPRAFSSSSSSSSSNTNTPNPNPILIHHHFQNNTANTNKHNPIQQNHFFQHQDLGFLRPIRGIPLYQNPPFSFPPTSSTPFLNPAFLSRFPPKRNIRAPRMRWTTALHARFVHVVQLLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDTYDNGSSGDTSEDLVFDRNSPRRSDLSIRQARTSVNQDIGNGGLWNNSSSRQAFLHGKPNLDSIGNVPSVEGMDPKGQSNEISDGNSSSDIAESSGKKLNLDLEFTLGRSL*


CDS Sequence:
>Vu_05580.1
ATGGAACTATTCCCAGTACAGCCAGATTTGTCCTTGAAAATTAACCCTCCAAACACCAAACCCACATCAAGTAATTGGAACAAGAGAAGCACAGAAGATGAGATGGATTTGGGGTTTTGGAAGAGAGCTTTGGAATCAAAAACAGTCAAAACAGACCTCTCCCTCTCTAATCCAAGGGCTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCAAACACCAACACCCCTAACCCCAACCCAATCCTTATCCATCATCACTTCCAAAACAACACTGCTAATACTAACAAACACAACCCCATCCAACAAAACCATTTCTTTCAGCACCAAGACCTAGGTTTTCTCAGACCCATAAGAGGAATCCCACTCTACCAAAATCCTCCTTTCTCATTTCCTCCCACTTCTTCAACCCCTTTCCTTAACCCAGCCTTCCTCTCACGCTTCCCTCCCAAGCGTAACATCAGGGCTCCCAGGATGCGTTGGACCACTGCACTCCATGCTCGCTTCGTCCATGTCGTTCAACTTTTGGGTGGCCACGAAAGGGCTACACCCAAATCAGTTCTCGAGCTAATGGATGTAAAGGATCTCACTTTAGCCCATGTTAAATCTCACTTGCAGATGTACCGAACAGTGAAAACTACTGATAGAGCTGCGGCATCATCGGGGCAATCTGATACTTATGACAATGGGTCTTCTGGAGATACTTCTGAAGACTTGGTGTTTGATAGAAACTCTCCAAGGAGGTCTGATCTATCCATTAGGCAGGCAAGAACAAGTGTTAATCAAGATATTGGAAATGGTGGCCTTTGGAACAACTCTTCAAGCAGGCAAGCCTTCTTGCATGGGAAGCCAAACCTTGATTCCATTGGGAACGTGCCTTCTGTTGAGGGAATGGATCCAAAGGGCCAAAGCAATGAAATATCAGATGGAAACTCATCCTCAGACATTGCAGAATCAAGTGGCAAGAAGCTAAATTTGGATTTGGAGTTCACCTTAGGTCGATCACTTTGA


Promoter Sequence:
>Vu_05580::LG1:83646546-83648546(-)
TATAAACATTATTAGATAATATTTTAATATTTAAAAAATCATATTATTAACCTACATAATTTTAATAAAAATAATAAAATACTATTATTATAGATTAATCTATATTTAACCTAAATTCATTTAAATCAATATTAAGTAAGTTGTTGAATTTAATTCATATTTAAAAAAAATTAAATTTTTTTCCATCTGATCCAAATTAAATGCATGATAAACCAAACTCACTCATAAATTTTAAAACAATCTTCTTATATTAATGTTTTCTTTTTGGGTTTTGTGTCTCTTTTATTATGTCTATCTTATTGGTATGTGTGTCTCAATAGAAGTCAAATATACGTGCAGTCGCAGGTACATTCTATAATGGAAAGACAAATTTACCCTTCTAAAATAATTAATTTCAATTTTCTGTACAGAAGATAGAGGGTATATTTGACTTTAAAATTTTGTCCTCGATTTGAACGCATACGTGTATGTATAATAATCATATACCTTTGATTTGTTGGTTCATTATAATAGAGAAAGTGACAACAATATAAAAGAATGCATGATGTGATTTTCAAAGAATTAGGTATTGCTTATTTCAGGAATCAAATTTCGAAAATAAGTTCTTCCATGGTGACATTTTCTCAGAGAAATATTTTTATCAAGAATTTATATTTAGCAACATTTCTAAATATGTTGGTTAAGTTTTAACGTTTTTAGAATATTTTTAAAAATTGAAATAATTTATGTAAAGTTATAATTTTCTGGGAAATATTTTCTCACATTTTTATTGTAATATAACTTAAGTGCTCTTTTATTGTGTAAGAAAATCACGGTCTTACTACTTAATATCATACATATTCAGAAATAAATTTTTTTAAAATTCACAATAATTAAACACAACAATAATGCCAAGTTCGCATAATTACTTATAAATTTTCAATTCATGAAACAACCACATTTTTTTAGGACCAGATGAGTGGTAGGTTGGTCCTGAAATTTATAGTTTAGGACAAAACAGCTTTTATCTTTAAATATATATTATATTGAAACTTGGCACATGTATCTTTAAATAGTTTAGTTTCTACATAATTTGGATTTTTTTTATTTGTGTTTCTTGTTAAAAGATAAATAAACAGTTTTAATTATAAGTTATGAAAAAAAAAATCGTTCATGAATTTATATAATACATTAATAAGGACTGATATAGTCATACTTTTTTTATTATGTCATAATTTAATATAAAACTAGAATAAAATAATAGTTCCAATTTATTTTTATAAATAACAAAAAAATAAATTTTGGTGTTTTTTTTAGAATCTATATTCTCTAGCATGTTTTTTTCCTGAGATGTGCTCTTAAAATATACTGATTTTTAACATTTTAAAATATATTGGTAACATTTATAATATATTAATATTAGTGTATTTTGAAAATGTAGTAAAAAATAACATTAAAAATGTTAGAAATATAAGTATTAGTTTACGTTTTATATTGACAAAGATGAGAAAATTGAACATATATATAAAGTAATCTTTAAAATTTGAAGTTAAAATAATATCAATATTTTATATGAATTATATCTATGTAGGACTATTATTAGCCTCCTCTCCTATGTGAGTCTCAAGTGTAAAATAAGAAATGTAATTCTTTCTTGTTAGCTGAGAAAAGAGAAGCAGAGTTAAGTTGTATGTTATAAAGTTAAGTAATAAGCATGTGATATAGGAAATTATTTTAGTTTTCATATTTTAAAAATGCAATATTTATAAAAAGGAATAAAAGTTAAAAACCTAATTCCATTTCCTTTTGTCACCCTTTTCTTCCTTTCTTACCCTACTACCCCACCCCCACGTCCACAAAAGCAAATAACACACACTCAATCTCTCTCTTCCTCAACTCAACTGTCATTTTCTCACACATACTTCACACGAAACAAACAACATTTCACTTCCATATACCTCTTTCTCTTTCTCTCTGTTTACAGTTTCTCTTTTAAATCTCAAATCTCTTCTCTGCACTGC


Gene Sequence:
>Vu_05580(-)
AACAAATCAAACACCTTTAGAATATCCATTCACTCACCTTTTTCTTCCACATCAAAACACCCTCTCATTCGTCTTCCTCATCCTTCAAAATTTTCTTAGCACAACAAAAGGAAATTGAGCTAGGAGAAACAACAACTTCGAACAAGAAGAGAAGAGAAAAGAAGGAGAAGGAGAAGAAGTACTTACCACAATATTACAGATATTTGTTATACACACATAGTTATAGATAGATAGATAGATAGATAGAGAGTTTGTCCTTTGAAAAGATGGAACTATTCCCAGTACAGCCAGATTTGTCCTTGAAAATTAACCCTCCAAACACCAAACCCACATCAAGTAATTGGAACAAGAGAAGCACAGAAGATGAGATGGATTTGGGGTTTTGGAAGAGAGCTTTGGAATCAAAAACAGTCAAAACAGACCTCTCCCTCTCTAATCCAAGGGCTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCAAACACCAACACCCCTAACCCCAACCCAATCCTTATCCATCATCACTTCCAAAACAACACTGCTAATACTAACAAACACAACCCCATCCAACAAAACCATTTCTTTCAGCACCAAGACCTAGGTTTTCTCAGACCCATAAGAGGAATCCCACTCTACCAAAATCCTCCTTTCTCATTTCCTCCCACTTCTTCAACCCCTTTCCTTAACCCAGCCTTCCTCTCACGCTTCCCTCCCAAGCGTAACATCAGGGCTCCCAGGATGCGTTGGACCACTGCACTCCATGCTCGCTTCGTCCATGTCGTTCAACTTTTGGGTGGCCACGAAAGTAATCATCCTTTCATTATTTCCCTTGTTCTCTTTTCCTTTTCCCTCCTCTTTATCTCCCATAACTTTGCTTTTCACTTTCTTTTATCGTCAAAACACACAAACAGATAAAATATATGGATCTTCATTCCTTCTAACCACTGCATTTTCTTTCTAATTTGGTATAGGGGCTACACCCAAATCAGTTCTCGAGCTAATGGATGTAAAGGATCTCACTTTAGCCCATGTTAAATCTCACTTGCAGGTAATCTCAAACTTAAGTTTATCATTAATCTGTCTATATTATTACTAATTAATCCCATCTCTCTTAATCTTGACTTCTTTTCATTGTTAATCTTTGTATTATTCACTTTAGTTAAAGTTGGGTACAGTTCTTAATTGACTTCGGTAAAAAAACCTACATTATATCTGTCGCAAATTCCAATGGTTTCCTTGCAGAGGGTCTCTCGTATCATTTACTATTTCATCTGTTGCCTCTGCTTCTGCAAGCTACTGATAAACAGCTTTTTCCTTGGAAGAATGAACCATCCATGTTGAGAGAGAGAGAGAGTGAGAGAGTCAGAAAGAGGTTTCCATAAACGAGTAAGACAAAACCCTGCAATTCAAAATGAGTCGCAGCGAATCCGAGACTTCAGTCCATAGCTATAAAGAAACATATATTAGTATTATTATATAAACTGCCAAAGAAAATGGGGAAAAAAATAATAGCAAGTACAAAACACCATCATTTCTCAATGATCCCTTCCTCAGTTATGTTTTTTAACCACACCAGTTCTAACCATGGTTAGTCACATGCTTCCATGCATTCCCTTCCCAACTTCACATGTTCCTCAAGTCACTGTCCTCGACATAACTATTTTATTTTAAAAATAAGATTTTTCACAGATAAAAGTCACGAGATTAATCTTTTCAAAAAGTAAAATACCCCTTTCTTTTTAGGTCTTGCTTTATTTCCATAATCTGAAATTAAATTCATGTATGCTTAAACATATCAATCCTTGTAGTTTTCAATGCTTCTATATATATATATGTACTAGAACTTCAATGATTGATTAGTAAAACAAGTTTGATATTATTCTCACACAGGTTTTCAATGTTGTTGTTATCTCTGGTTTTCTTTCTTTCTTCTTATCATACACTTTATTTTTCTCACTTGCCTTCTTATCTCTCATTTCTTCAATGAGATATCTACTAAAGAACATATTCTGATGATGAAGGTTTTCCAGTGCCTATAAATTAATGTTTTTATGTGATGTATTATACAATTAAATAAACATGACTCACTGTTGTATACTTTTTGTTTTATATATTTTCTATTTAAAAATATTAATTAATGCAAAAATATTTCCTAAACATGCATGCATGTTCTAAATAACTTACATAATGTAGCTTCTTTCCTGCGCTAATTATTCACAAATTCAAATCAGATGTACCGAACAGTGAAAACTACTGATAGAGCTGCGGCATCATCGGGTAAGTGACTATATATATATATATATATATAGAACTTGTATTTAGTTTGAAAACAAATCTACTAGTATATACTATTTTTGGTAAGTAGTAACCTTGTTCTTCCTAATTTTTTTCTCTCACTCTTTTTTCATTTTCTTGTTTAAATTTGAATTAATTATAATTAGGGCAATCTGATACTTATGACAATGGGTCTTCTGGAGATACTTCTGAAGACTTGGTGTTTGATAGAAACTCTCCAAGGAGGTCTGATCTATCCATTAGGCAGGCAAGAACAAGTGTTAATCAAGATATTGGAAATGGTGGCCTTTGGAACAACTCTTCAAGGTAATGGCGTTATGCTAATTACGATGAATAATATGTTAAGATACTTAGTTAGAAAGTTCTATATAACTATATAAGCCTACTTTGAGAACTTTTTCTTGTCAACTTTATCCTTCTTATAACCCTTGAAAGATTTTAGATTGAGATTTTGGTGTTGCAAAATGCATCGTTTTCACTTGCAAATATGCAATTGCAGTTGACAATGTAATTGCAAAGTTATATATAAAATAGTGTGCTTTTTTCTTTAGCAAATGTACGAAGGATCAATCGTCGTATATATGCAATATGTAAATAGACGGTTTTTGGATTCAAAATACATGAACAGGTCACCACATTTCAAGTTGTATAAAACCAATATATTATACGTCTGAAATTGTGAATAATTTAATCACTAAAAATGTGTTTGTTTCTTCACTTAAATTGAATGCTCATCTATATATTAGTATATAGGAGGTGGTTGTTTTAGTTATGTAAGTTAAAAATAATCAAAATTAATAAAAACTATGATCATTAAACTCATACCTAACACAGTTTGAACTTATAATAAATATCTCATTTTTTTTCCTAAAGTGTTTATGAGGAATTTTTCCTCAAGTATTTGTGAAAAAGTTTTTCCTAACGTACTAATAATTTATTATTACCTATTCCTCTAAAAAAAATTACAAATAACACGTTATTGTGAATGTTAGCAAAAAAAAAAAAGAATATTTTTAGTGGGTCTTTTATTATGATCATGACCAAAATTTAAAGTAATATATTTTGGTTGTTTGAATTTATTTGTTGGAAGTAAAACGTTATATATTTCATTTTATCTTTAAATAATGAAAAATTATTCTTTAACATACTTAAATTTTTTATATTCATTTAATACTATTTTTATTTATTTTTTAATTTCTTTTTTCTTGAACAAATATAAAAATTATATTTTTATAATTATTTTATCACGTGTTATGATCCATTAATTTTAAATAATACTAATGTAATGAGCGGAATTCATGCATCAGAAAATCTGTCTCTGAGCTTAGCCCATTGATACAAAGAAAGCAAGGGTCGAAAAATCAGAAAAGGTGTAAATCATGTCAGTTTGCTTTGTTGTATCTGTTCTGAAACGATGATGAGGTCCAAAACTCCATGATGGGGTAATAATACACTCTCTCTGCAAGCAAGTGGGTGAAAAAGGAAGTAAAAGAATCCCATTCCAAGACATTAGATTTTGATGATTGCATATAAATCCACCTCAGAAAGAGAGATATCTCTTTCCTTATGATTTGGTGGGGTCCTACAACTAGGAAACTTAGTCTTAAAGCCAATCACCATAGCTACAAATCATGGTGCCAAACAAAGTCATTTTACCCTTTGAGATGCGTTAGCTATCACATGCCATGGCTTCAACTTTATTTCAGAGAGCAGAAGAAGCTATAAATAAGACAGTAAAAGATTGCTTTCTTTCCTCAGAATGCTTTTCTTCTTCATGCCTTTCAGTAATGGGAAATATTCTTTCCATGTGTTTCTTGTAGCAGGCAAGCCTTCTTGCATGGGAAGCCAAACCTTGATTCCATTGGGAACGTGCCTTCTGTTGAGGTTTGTATAATGTTACTCAACACCCCTTTATCACAAAATCTGTCCTTTTGTTTAGGATTAAGTAGTTCTTTGAACTCATATATATGTTCACAATAAAAGAGAACACGTTCTATTCTTTTCGTTTAGCCTTGTACATTATGGAGACAAGGAAAGGAATAATTACACACTTTTCAAAAAGTTGCTTTCTTGCTCACAAATTCAACCTGCTGCTAGACCTATCTTTTTCACAGAGATGCTAATTACAAGGGTAAATTCATATTTATGCCAATCTTTATTGAAAAACACTACAGAAACTTAAACCTACCCAACTTGACTCAGATAAAGGGTTGCATCTGGCACATGAAACATGCAAATTCTGATCTTCATTTTCTTTGGTTTATTGAAGGGAATGGATCCAAAGGGCCAAAGCAATGAAATATCAGATGGAAACTCATCCTCAGACATTGCAGAATCAAGTGGCAAGAAGCTAAATTTGGATTTGGAGTTCACCTTAGGTCGATCACTTTGAGGTCTCTCTGGTGAATAATGCTATATTCATTTTGAAATATATAAATCATTATTATATATATATGTGTCTAGAATCACAAGAGCTATAGATAGCAGGAATAAGAATCAGGTACCCGCAAAGAAAATGAGAGAAAAAGAAAGCTGAAAAGAATAGAAAAGAAAGGATTAAAAAAAGTAAAAGTAGCTAAAGAAAGACAAGGAGACAAGAAAGACAGAAAGAAAGCAACAAAGAAGAGGGTGGGAAAGAAAAGCACGTCCTTCCAATCAAAGCTCTTTGTGATATTCAAATATATATTAATTTCTCAGTAAGTATATTAATTCTAATTTATTATTGTATATTTGCAATCTGACAAACGAATGTGCAGAAAAAGAGAGCTTTAGATATCTTAAAGTATGAAATGATACTTGATAATTGCAACACAGGACTTTACATTATGAATATTT