Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_05718 LG1 85310377 85313167 "PREDICTED: probable serine/threonine-protein kinase Cx32, chloroplastic isoform X1 "
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   abscission, negative regulation of floral organ abscission, negative regulation of floral organ abscission, negative regulation of floral organ abscission, negative regulation of floral organ abscission, protein phosphorylation, protein phosphorylation, negative regulation of floral organ abscission, protein phosphorylation
Cellular Component   located in   plasma membrane, plasma membrane, chloroplast, chloroplast, plasma membrane, plasma membrane, nucleus
Molecular Function   enables   protein serine/threonine kinase activity, protein kinase activity, protein serine/threonine kinase activity, protein binding, protein binding, protein kinase activity, protein kinase activity, protein binding, protein binding, protein serine/threonine kinase activity
SNP Position Effect Amino acid change
C/T 85310378 splice_region_variant&stop_retained_variant p.Ter395Ter
G/A 85310396 missense_variant p.Ser389Phe
A/G 85310438 intron_variant
C/T 85310517 intron_variant
G/C 85310532 intron_variant
A/T 85310534 intron_variant
A/G 85310559 intron_variant
A/T 85310593 intron_variant
A/G 85310596 intron_variant
T/C 85310603 splice_region_variant&intron_variant
G/A 85310611 missense_variant&splice_region_variant p.His381Tyr
A/G 85310654 synonymous_variant p.Ala366Ala
A/T 85310696 synonymous_variant p.Thr352Thr
G/T 85310697 missense_variant p.Thr352Asn
T/G 85310700 missense_variant p.His351Pro
C/A 85310721 missense_variant p.Arg344Leu
G/C 85310770 missense_variant p.Gln328Glu
T/C 85310788 missense_variant p.Ile322Val
G/C 85310825 synonymous_variant p.Thr309Thr
G/C 85310826 missense_variant p.Thr309Ser
G/C 85310840 missense_variant p.Asp304Glu
C/T 85310842 missense_variant p.Asp304Asn
G/T 85310845 missense_variant p.Gln303Lys
C/G 85310987 intron_variant
A/T 85311001 intron_variant
T/A 85311079 intron_variant
T/G 85311080 intron_variant
T/C 85311120 intron_variant
G/C 85311158 intron_variant
G/C 85311163 intron_variant
C/T 85311214 intron_variant
C/A 85311223 intron_variant
G/A 85311232 splice_region_variant&intron_variant
G/A 85311242 missense_variant p.Ala267Val
C/T 85311243 missense_variant p.Ala267Thr
G/A,T 85311246 missense_variant p.Leu266Phe
T/G 85311336 missense_variant p.Ile236Leu
G/A 85311341 missense_variant p.Ala234Val
G/A 85311372 intron_variant
A/G 85311440 intron_variant
G/T 85311444 intron_variant
A/T 85311445 intron_variant
C/G 85311452 intron_variant
A/G 85311468 intron_variant
T/A 85311786 missense_variant p.Thr191Ser
C/T 85311851 intron_variant
T/C 85311894 missense_variant&splice_region_variant p.Glu184Gly
G/C 85311896 missense_variant p.Phe183Leu
C/T 85311906 missense_variant p.Arg180His
G/A 85311907 missense_variant p.Arg180Cys
A/G 85311913 missense_variant p.Phe178Leu
C/A 85311919 stop_gained p.Gly176*
A/T 85311930 missense_variant p.Phe172Tyr
A/G 85312020 missense_variant p.Ile142Thr
G/C 85312030 splice_region_variant&intron_variant
T/C 85312033 splice_region_variant&intron_variant
G/A 85312046 intron_variant
G/A 85312149 intron_variant
T/A 85312150 intron_variant
G/A 85312197 intron_variant
T/A 85312279 intron_variant
A/C 85312366 missense_variant p.Cys117Gly
G/T 85312382 synonymous_variant p.Leu111Leu
G/C 85312414 missense_variant p.Leu101Val
G/A 85312421 synonymous_variant p.Phe98Phe
T/C 85312469 synonymous_variant p.Leu82Leu
C/T 85312477 missense_variant p.Glu80Lys
C/G 85312542 missense_variant p.Cys58Ser
G/C 85312584 missense_variant p.Thr44Arg
T/C,* 85312623 missense_variant p.Asn31Ser
A/G 85312646 splice_region_variant&synonymous_variant p.Gly23Gly
G/T 85312660 intron_variant
G/A 85312671 intron_variant
A/G 85312682 intron_variant
C/A 85312685 intron_variant
G/A 85312686 intron_variant
G/C 85312690 intron_variant
T/C 85312711 intron_variant
G/T 85312720 intron_variant
T/A 85312735 intron_variant
A/G 85312743 intron_variant
C/T 85312746 intron_variant
G/A 85312773 synonymous_variant p.His20His
G/A 85312795 missense_variant p.Ser13Phe
A/T 85312797 missense_variant p.His12Gln
A/G 85312810 missense_variant p.Val8Ala
C/G 85312813 missense_variant p.Gly7Ala
G/A 85312824 synonymous_variant p.Leu3Leu
C/T 85312842 5_prime_UTR_variant
T/A 85312868 5_prime_UTR_variant
T/C 85312877 5_prime_UTR_premature_start_codon_gain_variant
T/C 85312880 5_prime_UTR_variant
T/A 85312886 5_prime_UTR_premature_start_codon_gain_variant
A/G 85312887 5_prime_UTR_variant
C/G 85312891 5_prime_UTR_variant
C/T,* 85312906 5_prime_UTR_premature_start_codon_gain_variant
A/T 85312912 5_prime_UTR_variant
T/C 85312919 5_prime_UTR_variant
A/G 85312925 5_prime_UTR_variant
C/T 85312927 5_prime_UTR_variant
T/G,C 85312958 5_prime_UTR_variant
A/G 85312960 5_prime_UTR_variant
A/T 85312967 5_prime_UTR_variant
C/A 85312972 5_prime_UTR_variant
G/C 85312975 5_prime_UTR_premature_start_codon_gain_variant
G/A 85312984 5_prime_UTR_variant
A/G 85313028 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_05718.1
MGLCFSGVPSLHSSSLNRPHYPGSSDIHGSNVEFSGTTTTTTVTKSRFSVREGIDSECSPLPFPGGQILKWPELKVFSFEELKSATGNFKSDRLVGGFGRLYKGWLDENTLTPAKPCFGVEVAIKMFNPESSQGFSEWQSEINVLGRLSHPNVVRLLGYCWDEDQFLLVYEFMPKGSFERHLFERNHEPLTWNTRLKIVIGAARGLAFLHANENKAIFRDFKTSNVLLDGNYNAKIADFGLAKGLPGEQSLVNTLGIYGNAAPEYLATGKLYTKSDVYGFGVVLLEILTGMRAFDRRRPSGQQDLVEWTKPCLSSKKKLKTIMDGKIQGQYSPKAALQAAQLARKCLKVDHTQRPSMKEVLEGLEAIEDVHGRYPTHTQLHLLEPLSSSVGYEK*


CDS Sequence:
>Vu_05718.1
ATGGGTCTCTGCTTCTCCGGTGTTCCATCACTTCATTCCTCTTCACTCAACCGCCCTCACTATCCAGGTTCATCAGACATTCACGGCAGCAACGTCGAGTTCTCCGGAACCACCACAACCACCACGGTCACAAAGAGTAGGTTTTCCGTGAGAGAAGGCATAGACAGCGAATGCTCTCCTCTTCCTTTTCCCGGTGGCCAAATTCTGAAATGGCCTGAGTTGAAGGTGTTCAGTTTTGAGGAGCTAAAATCTGCCACAGGGAATTTTAAATCCGACAGATTGGTTGGTGGGTTCGGCAGACTTTACAAGGGATGGTTGGATGAGAACACCCTCACCCCCGCCAAACCATGCTTTGGAGTTGAAGTTGCCATCAAAATGTTCAACCCGGAAAGTTCTCAAGGGTTTTCAGAGTGGCAGTCTGAGATAAACGTTTTAGGAAGGCTTTCTCACCCCAACGTGGTCAGGTTATTGGGGTACTGTTGGGACGAAGATCAGTTTCTTCTTGTGTATGAGTTCATGCCAAAGGGAAGCTTCGAGCGTCATCTCTTCGAAAGAAATCATGAACCACTTACGTGGAACACCCGGCTTAAAATAGTTATCGGTGCAGCTCGGGGATTAGCTTTCTTGCATGCCAACGAAAATAAGGCCATATTCAGAGATTTCAAGACCTCAAATGTACTGCTCGACGGGAATTACAATGCAAAAATAGCAGACTTTGGGTTGGCTAAAGGGCTTCCTGGGGAACAATCACTTGTAAATACCCTGGGCATCTATGGTAATGCTGCACCAGAATATCTCGCAACAGGGAAGTTGTATACGAAGAGTGATGTGTATGGATTTGGTGTGGTGCTTCTTGAAATACTGACAGGCATGAGAGCATTTGACAGAAGAAGGCCATCAGGGCAGCAGGACCTGGTTGAATGGACCAAGCCCTGTCTCTCTTCCAAAAAAAAGTTGAAAACAATTATGGATGGTAAGATACAGGGTCAATATTCACCCAAAGCTGCATTACAAGCAGCACAACTTGCTCGAAAATGCCTAAAGGTTGACCATACTCAACGTCCTTCAATGAAAGAAGTTCTTGAAGGATTGGAAGCTATTGAAGATGTCCATGGAAGATACCCAACTCATACTCAATTACACTTGTTAGAGCCTTTAAGTTCTTCTGTAGGGTATGAAAAGTGA


Promoter Sequence:
>Vu_05718::LG1:85313167-85315167(-)
GTGAGTTTTGGTAGAGAGAAGGGAGAGCTTTTGGAGAGAAGGAGGAGAATTTGAGAAAAATCAGATTTTGGAGAAGAAGATGCATGCAGAGAGTGTGACGCGATTTTCAGAAAATTTTGTTTTGTTAAAACCGAACGTCCGCTCCTCTGCTGACACCTGCATTCTACTATCTGATTTCTGATCCTTGTTGCTTGACACCTGATGTCTGTTCAGAGGGGTTTTGGGTGCGTTTTTAATGAGGTCTGATAGTGTTGATATTTTATTACACAAAATTTTAATATTATTTTTTATTTGATTTATTTTTCGAATAGTTGTTTATAAATTTATATAGATTTATAAATTTATATTTTAAATATTTGTATAACTCTATATACCAATAATATTTATACAAATACAATTGGTTTAATAATAAAAAATTTTAAATTCAAATGTAAAATTTTAACACAGAAATTTAAATAAAGTTTAATATAAAATATAAATTTAAATAAAGTTAATATTGTTAAAAGTATTTAATAAAATTATCAGTTTTAATAAAAATATCTTTATAAAATTCATATGAAAGTTAAATTTGGTTTTAATAAGTGAAGTTGTTTAATTTTAAAAAAAATTAAGAGTAAATTTAATCAAAATAACAAAGGACTAAATTGATATTCAAACAATGATTACAACATACAAGAACAAACACTAGCTCTCAACTCTGGCTATCCTTGCAGAGGTATCCAATTACACGAATTGCTAAAGGACTTCATCAAATCACACATGATAAAACTCTCAATTATCATACCCTTAGGATAAAATCCTATTATGGGATAACCCAACAAAATTATACATATATCCATTGGAAAAACCCAACACAACCATGATATGACCCTATCACCATGCAAAACATATTGTCATACATCCACATGCATTAAAACAACATTACCTTTCAAGATAATCAAAAGCAAACCCTATTCATCATAAAAACAAATAAGAAAATAACCAATGATAAGTTTCTCCATACCTTGGCCAATCCTCCCTTGCACTAAGGTTTTCTACAACTCTTTCTCTTTTTCTCCTAGAAAACATTTATTTTCTCCCTTAACACTCAATTTCGTTTTTAGGAAAACTATGTGCAACCCCTTTTTCCTCTTCTCTTTTTTTTATCTTTTTTCACTTTATATCTTTATCTTTTTGGTTGAAATAAAATCTCTCACTTAATCTTTTAAAGCCATCAAGATTTCCTCTCTTATTTTATCTTATATACTTTTTAAAATACCACTAACCACCAAAAATCTCTTAAAGATTCTCGTAATATTTTAATTTTAGATTTTAATTTTATTCTTTTACTTTTTACACCCCCTTATATTAATTTCTATACCGATTAATAAAGACAAAAATATACTTTTATCTTTGGGCCTAAAATTCAATTAAAACAAAAGTTTCTCTTAACTCTTTTTCATTCTAGAATTGAACACACACCCATTCAATCCTAAACCACCCTTCCATCAACAAGTCAACACATCACATTTATCACACAAATCATTAAAATGACAATATATCAATCATATATTTTACTTAATCAACAATAACATTAATTAATAAGCATAACAATTATAATCATAAAAAAACACCTAAATATTAAACATCAATTATGAGCCAATAATATTCAAGTCTCAAAATCACTTCATTCTCTGATTACTATAATTTTGCTAATATTAACTTAAGCTAAGCATAAATGTTGTCCTACAACTTTACTAATGTTAAAAAATCCTACACTATTATTTAAAAGAAAATCCTACACTACTTAACCTATTTTATAATAGTCTAGAAATACTTCATGATGATGCAAATGAATAAGAATTTAGCTTTACCTTGAAAATTCTTAACTCTTCTTAAACTTTTTTAGCCATGTTTTTTTGATTGAACCTTGAATAAGGATTTGCCATGAGTGCCACAGTAGTAAAGCAAGGATATCAACGAGTATAAAGAATAAAGATGAAGCTCCAAAGGAGTTTATC


Gene Sequence:
>Vu_05718(-)
ATCTAGGATACGAGCATCGACCTTCACATTGACGCCACTAGAGGATGATTTGAGTTATCTACGAGGTTCGAGATTGGTGGGGTCAGGATTTACGCGCTTACCAGATGGCATGGATGTGCTTAAGGGGTATATTGAGGACTATGTCATAAGTCTTCGGGTGTGCGAAGTTTATTTACTCATACTCAGACAAATCTTGATTTTTATGAATGAGAAATTATTGTCTGATCTAAAACCAGTAGGGATGAACAACTTCAATTTAAAGTGCCAGCAATCCAAGACATAGTCTGATTAATCAAGTGACAACCAAAACCAGAGGTTTCTGATTGCCATATAAGATGGGTCTCTGCTTCTCCGGTGTTCCATCACTTCATTCCTCTTCACTCAACCGCCCTCACTATCCAGGCAAGTTATCAAAATTTCTGTGTCCTTTCTAAATTCATCCCAAAACAGGAAATGATTCGTTCCTTTTTTTCCTCCCATTCGAATTTTCCCATGACGGGTTCGGTTCCTCTGTTTTCAGGTTCATCAGACATTCACGGCAGCAACGTCGAGTTCTCCGGAACCACCACAACCACCACGGTCACAAAGAGTAGGTTTTCCGTGAGAGAAGGCATAGACAGCGAATGCTCTCCTCTTCCTTTTCCCGGTGGCCAAATTCTGAAATGGCCTGAGTTGAAGGTGTTCAGTTTTGAGGAGCTAAAATCTGCCACAGGGAATTTTAAATCCGACAGATTGGTTGGTGGGTTCGGCAGACTTTACAAGGGATGGTTGGATGAGAACACCCTCACCCCCGCCAAACCATGCTTTGGAGTTGAAGTTGCCATCAAAATGTTCAACCCGGAAAGTTCTCAAGGGTTTTCAGAGTGGCAGGTTTCATTTACATTTTTTAAACTTTGACTTTAAATTTTTAATGAACTGAAACACTTCCGCCCTTAGATTAAAGTAATCACTATCATGTTATGCATCTTAGCAATTGAGTACAAACTTTTCTTTACAATGTGGTAAAGTTAGATGAACACGTCCTTTTCTATCATGTTGTAATTTTACTTGTGATATTGCATTTAATTTCCGTGTCATTAATCATGCGTCTCGAACAACTTGAGTTGCTATATAAACATTTGCATTGGTTGGAAAATGCAGTCTGAGATAAACGTTTTAGGAAGGCTTTCTCACCCCAACGTGGTCAGGTTATTGGGGTACTGTTGGGACGAAGATCAGTTTCTTCTTGTGTATGAGTTCATGCCAAAGGGAAGCTTCGAGCGTCATCTCTTCGAAAGTATGAACTGATGACAATTAAAACAGATTGAAGGAATCAAGTCTTGACTTTAAGTTTAATTCATATTATTTGTCTTGTTTCTGTGCAGGAAATCATGAACCACTTACGTGGAACACCCGGCTTAAAATAGTTATCGGTGCAGCTCGGGGATTAGCTTTCTTGCATGCCAACGAAAATAAGGCCATATTCAGAGATTTCAAGACCTCAAATGTACTGCTCGACGGGGTGAGTTAGTTTTTATTCGTATGTCGTATTGGAATCCAAAGCAAATACAGTATCAAGTCAGGATGAATGGGCACTTACTAATTTGGACCCCATCATTGGTTTTACTGGGCAAACTCATTTTGAAAAGGTTTAACTCCATCTTTTAACATACAACCTGAAAAATGCAATATCTTCATTCTCATAGTCTCTTTCTTAGGGTTGTCAATACTATAGAGCCGGTGTCTAGTTGAAGAATAATATCACATGGTGATATTTTTAAATTGAGTGCTGAATTCCTCATATAACTTTAATAAGCGATTGCTTTGTATAGTACAGAATTACAATGCAAAAATAGCAGACTTTGGGTTGGCTAAAGGGCTTCCTGGGGAACAATCACTTGTAAATACCCTGGGCATCTATGGTAATGCTGCACCAGAATATCTCGCAACAGGTAACTATATCTGGTTTATTTGGTTTGAGGAAGTACTATTTGTTTTTATTTCACATATTCATAAGTAAAATGACACGTCACTTCTTGATTTCAAAGAAACTTAACAGGGAAAAAAGACATTGTCTTGTGAAAATAAGTCAAAGACAAGAAAACAGAAAGTTTCCTTAAAACAAAACACCTTAATGTTATAGCAGTAAAGCAATGAATGTTTTGTGGAAGATGAAGTTGGGAAGGTTGACTAAAAATAAGGAATAATGAACATGTGTTTGGATTGTATAAATATTTGACAGGGAAGTTGTATACGAAGAGTGATGTGTATGGATTTGGTGTGGTGCTTCTTGAAATACTGACAGGCATGAGAGCATTTGACAGAAGAAGGCCATCAGGGCAGCAGGACCTGGTTGAATGGACCAAGCCCTGTCTCTCTTCCAAAAAAAAGTTGAAAACAATTATGGATGGTAAGATACAGGGTCAATATTCACCCAAAGCTGCATTACAAGCAGCACAACTTGCTCGAAAATGCCTAAAGGTTGACCATACTCAACGTCCTTCAATGAAAGAAGTTCTTGAAGGATTGGAAGCTATTGAAGATGTCCATGGAAGATACCCAACTCATACTCAATTACGTTTTCTATATGTTTGATTGAATGATTGTGTTAATGACTTGTATGTATGACTGAAACCTGTGAACTGTTTGGTTTCTGCTGAAATTGTGTTCGGTTTGTGCTTGGTTGAAGAAAGTGAATGAGTGGAATTGAGAAGTTGAAGCTAAAAACGAAATTAGGTAATGAATTGTGTTTGAGCATGTTTAGTTAGACTTGTTAGAGCCTTTAAGTTCTTCTGTAGGGTATGAAAAGTGA