Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_05791 LG1 86244510 86245437 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, response to salt, negative regulation of abscisic acid biosynthetic process, negative regulation of abscisic acid biosynthetic process, response to abscisic acid, regulation of transcription, DNA-templated, response to gibberellin, regulation of transcription, DNA-templated, negative regulation of abscisic acid biosynthetic process, negative regulation of abscisic acid biosynthetic process, response to abscisic acid, negative regulation of abscisic acid biosynthetic process, response to gibberellin, regulation of transcription, DNA-templated, response to salicylic acid
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity
SNP Position Effect Amino acid change
G/C 86244587 missense_variant p.Trp26Cys
C/T 86244602 synonymous_variant p.Leu31Leu
C/T 86244642 missense_variant p.Pro45Ser
C/T 86244644 synonymous_variant p.Pro45Pro
A/G 86244712 missense_variant p.Asn68Ser
C/A 86244883 intron_variant
G/A 86245075 synonymous_variant p.Ser158Ser
C/A 86245130 missense_variant p.His177Asn
T/C 86245186 synonymous_variant p.Ile195Ile
G/A 86245353 missense_variant p.Arg251His
T/A 86245366 synonymous_variant p.Ser255Ser
G/A 86245408 synonymous_variant p.Ser269Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_05791.1
MSQSEEDWCEELTRALEANSTLLDQWCPEELYNLQGQSLPQQNLPDSPPIQHNANVTNVESALIPLLNNPLKTQSQNGDPPVQRRQRKPRITWTVKEHELFLWGVKKYGMSWKIISKEIVRTKTPSQLASHAQKYFERQKIPPSERKRKSIHDITLPLGVNPRPAPVQVTVPFNVHPPRAQVNGSLNVQSPLTPDFSMQNIHPLVYAPAQNSYMQNILPAQNSYMQNILPAQNSYMQDILTANVDPLPYTPLQDIYKQNIQGQQQMPPFGSPYYNIYK*


CDS Sequence:
>Vu_05791.1
ATGAGTCAGTCGGAAGAGGATTGGTGTGAAGAACTCACTAGAGCTCTTGAGGCTAACTCCACTTTGCTTGATCAATGGTGTCCTGAAGAACTCTACAACTTACAAGGCCAATCATTGCCTCAACAAAACTTGCCCGATTCTCCTCCAATACAACACAATGCAAACGTGACTAACGTTGAGTCGGCTTTGATTCCACTACTCAACAATCCGCTGAAGACGCAGAGCCAGAATGGTGATCCTCCGGTGCAACGTCGACAACGCAAGCCAAGGATAACATGGACTGTTAAAGAACACGAATTATTTCTTTGGGGCGTAAAAAAGTATGGCATGAGTTGGAAAATTATTTCAAAAGAGATTGTTCGAACAAAGACACCAAGTCAATTGGCCAGTCATGCCCAAAAATATTTTGAACGTCAAAAAATACCGCCATCAGAAAGGAAAAGAAAAAGCATTCACGATATAACTCTTCCTCTCGGTGTTAATCCACGTCCTGCTCCTGTTCAAGTGACTGTTCCTTTTAATGTTCATCCACCTCGTGCTCAAGTAAATGGTTCTCTTAATGTTCAATCACCTCTTACTCCAGATTTCTCCATGCAAAATATTCATCCACTCGTCTACGCTCCTGCTCAAAATTCCTACATGCAAAATATTCTTCCTGCTCAGAATTCCTACATGCAAAATATTCTTCCTGCTCAAAATTCCTACATGCAAGATATTCTAACGGCTAATGTTGATCCACTTCCCTACACTCCGCTTCAAGATATCTACAAGCAAAATATTCAAGGACAACAGCAAATGCCACCTTTCGGTTCACCATATTACAACATTTATAAATGA


Promoter Sequence:
>Vu_05791::LG1:86242510-86244510(+)
CATGGATCTCTTTGCAACATTTATATCTTAATCACACTATAGTATCAACCAACCTTAAAAGTATCAAATCTTGACCTATCAAAGAACACTAGTCAACTATTTTTAATAATCTAAGTCTTTACAACAACAATTCATCCTAACTAACTGTATTAACATTTTACCTCAAAAGCACCTTTCACATGCCTTTCAAATATATCATTATTATTTCAATTTTTTATCTTTATTTTTATAAATATTTCTGGATGGGGATAAGTGTAACGATTCTCAGATGGTAAATTGACAAAAAAAAAATTCATATGTCAAAATAGTTCAACATATTAAATTTTTTTGAGGATAATTCAAATAATTTGAAAAAATTAGAAGGAAACAATGATATATTTTTTTTCCTTTTTAAAGAAATAAGCTTAAAATCATTTTACTAAAAAGCTCATACTTGTTTCATGAAAAAAACCTACAGATCAAATAAGTTTGCTAATTGTATGATTAAAAATAATAATGACTAAGAAAAGGTTAATGAAATTGTTAGAGTGTAAATGAAAAAAAGTAGGAATAATAATGATTAAGCCAATGGACATGTTCTTAAAGACAGCATAATGAGTGTCCTTCATGGGTAACAAAAGGAAAGTGAGAAAAGAGCACTGGATTAATGTGAAGTAGATGATGGCGAAAGACAGTGTTGTCATTAAAAGATAAAGGAAAAAGAAAAGAAAATGATAATAAATGTTCAGCATTTAATAGTCTTATCTAACCTACAGATGTTGTCAAGTTTGGATTGGACGGTTGAAAAAAAACACAGGTCACTCATTTTTTTTATCCTTTATTATTTTGTAATTTATTTTCAACTGCTAAAATGTATTTATTGATATTTCTAGTTGATAAAAGGGAGTATTAAATTTGTTATTATCGAAAATAAGTCATGAAATAGTTTAATTTTCTAAATGGATGTGAGATCTAATTTGATATAAAGGGAGAAAGTCTATCCACGTTAAAGTTAAGAAAAAATATTTCGTGAGGATGAGAGTAAATAATAAATTTTAGATTAGTACACTCTCTATTATTATATATATTTATAGATTTTTTGGGTTTGTTAGTGTGTATAATAATAAATAAGCTTAAGATATAATAAATATTATCATAAATACTATTTTTTTAATTTACTTTTAGAAGTGTTGATATTTTATACAGATTTCATATTTAAATATCACACTGATTGAATTATTTTGAACCTCACAACAATAATAATTTTGGTTTAGATAATTATAAAATCCAGCTAGCTAGACCGTTGGGATATGAACATAAGTGTTAAAATATATTTAATATCTAGAAGTATCTGTTTTGGATTTAATAAGTTAATTGTTCCAATGAATTAGGGAGGTTAAAATACCTGTACATTTTTTAGCTGAACATTAAAAAGTCAGAGTAGCACTTAATTAAATGAATAGTACTTTATTAAAGCATCGGTCAAGTACATGAAAATTTTGAAAAAATAGGATGGTAAACTGTGTATAAATTGAGTGGTAAAATATATAAATTAATAATTTAAATAATAAAAATTCTAATTAAATCTTTAAAATTCATGTTGACAGGTATTTTGCACTAATATAATTCTCTCCATATATAATTTAGAATAATATTTTTGGAATTTTTTAATATCATATATTTTGGTATATAGTTTTTTTTAATACTTGGACCTGATAAAAAATTAGATGAGATAAAATGAAATTAATCTTTAAAGAAATCCTCATGTAAAATATAATCAAATAAAGTGATAAAAATTAAATAAGATAGAATGAATTAATCTTTAAAGAGATTCTTGTATAAAATATAATCAAACAAAATAATAAAAGATTAGATAAGATAAAATGAAACTAATCTTTAAAGAGATCTTTACGTAAAATACACAATCAAACAAATCTAGATACAAATACAAATGAGAGCCTATAAAAGTAGTAGAGAAGGAAGAGAAGTTCATTTGTGAGAATTGAGATTCTTTGAGAAAA


Gene Sequence:
>Vu_05791(+)
ATGAGTCAGTCGGAAGAGGATTGGTGTGAAGAACTCACTAGAGCTCTTGAGGCTAACTCCACTTTGCTTGATCAATGGTGTCCTGAAGAACTCTACAACTTACAAGGCCAATCATTGCCTCAACAAAACTTGCCCGATTCTCCTCCAATACAACACAATGCAAACGTGACTAACGTTGAGTCGGCTTTGATTCCACTACTCAACAATCCGCTGAAGACGCAGAGCCAGAATGGTGATCCTCCGGTGCAACGTCGACAACGCAAGCCAAGGATAACATGGACTGTTAAAGAACACGAGTATGTATTCAAATTCAGCTTTTCATTATGAGTTAAATGTGTTTTTAATATCTCCATTTTCATGTAAAATTAAAATTCATTTTTTTTGCAGATTATTTCTTTGGGGCGTAAAAAAGTATGGCATGAGTTGGAAAATTATTTCAAAAGAGATTGTTCGAACAAAGACACCAAGTCAATTGGCCAGTCATGCCCAAAAATATTTTGAACGTCAAAAAATACCGCCATCAGAAAGGAAAAGAAAAAGCATTCACGATATAACTCTTCCTCTCGGTGTTAATCCACGTCCTGCTCCTGTTCAAGTGACTGTTCCTTTTAATGTTCATCCACCTCGTGCTCAAGTAAATGGTTCTCTTAATGTTCAATCACCTCTTACTCCAGATTTCTCCATGCAAAATATTCATCCACTCGTCTACGCTCCTGCTCAAAATTCCTACATGCAAAATATTCTTCCTGCTCAGAATTCCTACATGCAAAATATTCTTCCTGCTCAAAATTCCTACATGCAAGATATTCTAACGGCTAATGTTGATCCACTTCCCTACACTCCGCTTCAAGATATCTACAAGCAAAATATTCAAGGACAACAGCAAATGCCACCTTTCGGTTCACCATATTACAACATTTATAAATGA