Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_05849 LG1 86820603 86823381 PREDICTED: NAC domain-containing protein 37 isoform X2
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   xylem vessel member cell differentiation, xylem vessel member cell differentiation, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, xylem vessel member cell differentiation, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, positive regulation of secondary cell wall biogenesis, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, callus formation, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, xylem vessel member cell differentiation, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus, nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, sequence-specific DNA binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding
SNP Position Effect Amino acid change
T/A 86820603 splice_region_variant&synonymous_variant p.???234???
G/A 86820968 missense_variant p.Ala112Val
A/G 86821353 upstream_gene_variant
A/T 86821363 upstream_gene_variant
G/T 86821382 upstream_gene_variant
T/C 86821399 upstream_gene_variant
T/A 86821400 upstream_gene_variant
A/T 86821476 upstream_gene_variant
C/A 86821586 upstream_gene_variant
A/T 86821665 upstream_gene_variant
T/A 86821673 upstream_gene_variant
C/A 86821763 upstream_gene_variant
A/T 86821807 upstream_gene_variant
G/A 86821808 upstream_gene_variant
G/T 86821888 upstream_gene_variant
C/T 86821991 upstream_gene_variant
T/C 86822002 upstream_gene_variant
T/C 86822328 upstream_gene_variant
C/T 86823087 upstream_gene_variant
T/G 86823108 upstream_gene_variant
T/A 86823290 missense_variant p.Lys31Met

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_05849.1
MESCVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIKEIDLYRIEPWDLQEGWVVCRAFRKRTNGQTKTIEGWDRRYTYEEQACGVYSWVDPIDLMLRKPQRNNISAENLLHKKETRLMHAEEAMQLPELESPSMTIVKKQSSTSVSLISDNINKEDGSEKVTDWRALDKFVASQLSQEERHEIEGMSSFAGHSGSDMALLLLQNTNERNKFNPFLSAASSDCDIGICVFEK*


CDS Sequence:
>Vu_05849.1
ATGGAGTCGTGTGTCCCACCGGGGTTTCGCTTCCACCCAACAGATGAAGAACTTGTGGGTTATTATCTCAGGAAAAAAGTTGCTTCTCAGAAGATTGATCTTGACGTTATCAAAGAAATCGACCTATATCGCATTGAACCATGGGATCTCCAAGAAGGATGGGTTGTGTGCAGAGCATTCAGGAAAAGAACGAACGGTCAAACGAAGACTATCGAAGGGTGGGATCGAAGGTACACATACGAGGAACAAGCATGTGGTGTCTACTCTTGGGTGGATCCTATCGACCTTATGTTAAGGAAACCACAGCGGAACAATATTTCGGCTGAAAATTTGTTGCACAAGAAAGAGACAAGGTTGATGCATGCAGAAGAAGCGATGCAGCTTCCTGAGCTAGAAAGTCCTTCCATGACAATAGTGAAAAAGCAAAGCTCGACATCAGTGTCCCTTATATCAGACAACATTAACAAGGAAGATGGTTCTGAGAAGGTGACCGATTGGAGGGCACTTGACAAGTTTGTGGCTTCTCAGTTGAGTCAAGAAGAGAGGCATGAAATAGAAGGGATGTCAAGCTTTGCAGGTCACAGTGGGTCGGACATGGCATTGTTGCTACTCCAGAATACTAATGAAAGGAACAAGTTCAACCCTTTTCTAAGTGCAGCTTCATCAGACTGTGACATCGGGATATGTGTATTTGAAAAATGA


Promoter Sequence:
>Vu_05849::LG1:86823381-86825381(-)
CAACCATATTGTTCAAAAAACGTTGAGTCTGCGATACATAACAACAGCAGTTAAAAATAAAAATAATCTGAGTAAAATAAATAGGTAACCTAAGGTGGGATAAGATAAGAAGAAGAAGAAAAAGAAAAAGAAAAAGAAAGAAAGCTGTGGTTTGACGAAGGTAAAAAACAAAAATAAGAAAAAGAAAAGAAAGAAAAAGATGAGCAAAAAGAGAAAAGAAAATGGGGTAGGAAGCTAGGCTATGACGTCACATGGGGGAACAACCATGAAGCCATGCGCAACTCAGTGGTCCTTCCTCTCTTTTATATATATGGAAAATGTTATTTGGACAACAAAAGTTTGACACAATTTTGACAACGGCGACGTGGCAGCTGTGCATTGGCTCACTGAACCGGGTTGAGGGGTATTTTGGGTTTTTTCTGGTTTGTTTTCAATTCACTGAGCCAATGCACAGCTGCCACGTCGCCGTTGTCAAAATTGTGTCAAACTTTTGTTGTCCAAATAACATTTTCCTTTATATATGGATTATACCCTTTCCATTCCTCTCTCCCAACACCATTTCTATTCTCACTCTCTCTCATCATGTTGTTCTCTCCCTCATAGTTTCTCTCCTTCACCTCATCATCATCATCATTAATTTTGTCCACTTCTTCCTCATTGCTCTTCTCTTTAACACTAACACTGATTATCAGGTCAGCTAATTACTATCTCTGCATGCCAAATCCAAACATCACACAAACAACAACCACCTTTCTCCATAACACTTCACCTTTTATAATTTTTTCTTTTCGTTTATTATCTTGTGTATTATTATCTATGTCTGGTGTTTTCTCATACATAACTGATTGATTATACATTCTCCCAATCTGGTTCCCAAACGAGTGTTGAAGTGTTTGATGAAGAATGTTGATGAAAACCTAGAAAGGAAGGACGTAGGGCAAAGGGTAAGGGTAGGGTACCCGAAAAGTTGTAGTTGAAGACTGATGTGTGCTGTGAAAATTCTCGACAAAGGGACAAGAGAGTCAGAGGGTCAGCTTCCACAACGAGACAGACTTTGGCTAATGGCTACTGTGCTTGTGTTGTGTTCTATGTATATATCTAACCTTAACTTTTTTCCCTTTTCTTTTTATTATTATCCCTTAGCCCGTGGCAGGCCTTGATCCAATAAAACGGTGTCTCTCTTTTTGTCCCTCAAGCTTTTAGCTTTCGACCAAACGCGTGCCCAATTTGTGATAACGTCATCTCATCTACCCTTTACAATTTCTTTGCTTTTATAACTATCAGTATTTTTACCCATATTGGTGTTTTTTTAACAAATAAAAAGTAGAGTTTGAAACTTTATATGAAAATGTTTAGATGAAAGTTTAGAAATTTTGAATAAGATGATAGGATTATTTGAGAATATGTATAATTATGAATGGTAACGTGGATTGGGAAACCCCGTTCTTGATGAATGATTCACACCATTCAGCAACACAAGACAGCATGATTAGCACAAGCCTCTAGCTGTCCGTTTCTCGCAGACCCTTCACAAACAGAGGTCTAAGCTCCAACTCCTCATGGTTTTCATCAAAACCTAACTCTCATGATTTGGTTATTTCCTTTCTCTGTGTACCCAGGGAAGAAATTAATCATTGTTTCTCAAATTATGGGTTTTTGTTTATAACACGCGCTTATTTTTATTTCCTTTTCAATTCAATTCCCTTGAGTATTGCTCTCCACCAAATGAGATGATGGTCATCTCTGATAGCACTTGCCACCTTTTCACCAAGAGGACTCCTATTATATATTTCCTTTTCTTCGCCTTTGCCTTTTTAGCTTTTTGGTTACTGGAGTGTTTTCTCTTTGCTTCTCTTCTTTCACCCTATATTCTCTCACATACACATTCATATATACTCGTACATTCATCTCTTCATGCTTATAATTCATACATGATGGAGAAACTCAAGGGTGGAAGGTATTAATGGTGAATTTTATGCAGTTCCAGTGATTCATAGGAT


Gene Sequence:
>Vu_05849(-)
ATGGAGTCGTGTGTCCCACCGGGGTTTCGCTTCCACCCAACAGATGAAGAACTTGTGGGTTATTATCTCAGGAAAAAAGTTGCTTCTCAGAAGATTGATCTTGACGTTATCAAAGAAATCGACCTATATCGCATTGAACCATGGGATCTCCAAGGTATGTATATGCGCACATATATAAACATTATATATACGTATAGTACTTCTTAATTATCCTTCAGAGTAATGCATGATATACTTCAATTTATCTAAGAAGAAGTAATCTTCCATTTGTATAAGCTTAATGAACTTTAATATGAAAAAAAAAAATTAACCATTTCCCAAACACCCACTTACACCTTCAGTTTTCTTCGTGAATCAAAGTAGGGTTTTAAGTGTAAAATTGATCAAACTTTTGTTGAACAAGTGTTTTTAGCTAGATCTTTGTCTTTTTTTCAAAAGATTTTAGAGTATTGTTGTGAAAGATTTGAGTTTGGCAGAGAGATGCAGGATTGGGTATGAGGAGCAGAATGAGTGGTATTTCTTTAGTCATAAAGATAAAAAATATCCAACTGGGACAAGAACCAACAGAGCTACAATGGCAGGGTTTTGGAAGGCGACAGGAAGAGACAAATCAGTGTACGAAAGGACCAAACTTATTGGCATGAGAAAGACCCTCGTTTTCTACAAAGGAAGAGCCCCTAATGGACAGAAAACTGATTGGATCATGCACGAGTATAGGCTTGAAACTGTCGAGAATGGACCTCCACAGGCAAGTATATCTTTATGTATTATGCACAAATATACCATTGCCATATACCCTTTTACGTATTCTGCTAAATTCTTGCTTTCTCAACTATATTTAAATAATCATTTTCTTGTTCATGGAGTTGAATTTGAGATGTTAATTATGAGTTCACACTCGATGAGTTCCTTTAGATGGCCCTTCATTTAGTCAATTATACGTAATTATCACATATTTCACTACCCTAACCTTGTCCTATTCACACTATTCCTAGCTTAGTCACTGTTAATTAATCACTTCCAATGACTTTCCAATTTCCGAGTAATTCCTTCAGCAAAAACGTTAGTTTAGTCTCATGTGCTTCTGTTTCTGCATCAGTGCAGATTGAGCACTTGATTAGTTCCCCTAAATGAATTTTATAATTTAATATAGGCCCTAACAAGTTTGCTTTCGTAGACTGACTGAATATTCAAGGCACGTACAAGCTTTCTACCTATTTGCTACAGAACTTTTACCAACAAGAAGTCAAAAGTCAGTTCTTTCAAAAGCGTTTTCTTTTTCTTTTCTGATACACTTTTAATTCTTGTCATATGTGAAAACCCATCTTCTTTTTTGATATGGTAAAAGAATTTTTGAGGAACAAAGGAAGACAACTTCTACCTTGTCATAGTGATTTTGTTTTTCTATAAACTTGTTGGAGACTTAATTATGTACATAAATTATTATCTAATTAAGTTGTTATTTACATACAGAAAATAAGAAATTGTTTTTCCTCAAACAAACGAATGTCCAGTTTAATATGTTTAAGTTCTAGGTATTTCTCTTTATTGAACTTAATTACAAGTATATATGCTATATATGTTCATATAGAAAAAAAACCCTCAATGACTTTTTTGCGCACTGCAAGTAGTAGGTCTATGTAACAAGTAGTCAATAATTTCTCAGAGAAAAGAAAACTGTAAGAGAAAAAAAAATTGTTTCTCGAACAATTATTATAAGATTTTTTGGATTATTCTAGTTTTAAAGTCAAACAAGTGGATTCAAATCACATGTCCTTTTTTTGCATCTTTTCTCGTGTCTTTCTGGTTGAAAAACGACATAGCCAGAAAAAATCAAATAATTAAGCAAATGTCACCATTTACAAACCTTTTGCTAGTATATATCAATTTTCAATTCGGAAGACATAAAAGGTGAACAGATAAAGAACCAAAAGGAGACTTATTTCGCTCTCAAATAAGCCACAATAATATTCTTTTATTGAATGCTTTCTTAAGGATGCAACTAATAATTTGTTTATTAAGTGGCTATAGTACCATTCATACCACACAGGCCGAAAATTTGCAAAAGCTAATAGGAAAAAACACTCATGAAAAGTTAAACACGAACTTTCACTTTTTTATTTTCCATTAAAAACATGAGTTGAACTAGGGAAGTCAAACATAATACATTTCAAGAGAAAGTGAAAGTCTCATCTTAGCTTTCCAACATATAATCGAGTGTGTGCAGGAAGAAGGATGGGTTGTGTGCAGAGCATTCAGGAAAAGAACGAACGGTCAAACGAAGACTATCGAAGGGTGGGATCGAAGGTACACATACGAGGAACAAGCATGTGGTGTCTACTCTTGGGTGGATCCTATCGACCTTATGTTAAGGAAACCACAGCGGAACAATATTTCGGCTGAAAATTTGTTGCACAAGAAAGAGACAAGGTTGATGCATGCAGAAGAAGCGATGCAGCTTCCTGAGCTAGAAAGTCCTTCCATGACAATAGTGAAAAAGCAAAGCTCGACATCAGTGTCCCTTATATCAGACAACATTAACAAGGAAGATGGTTCTGAGAAGGTGACCGATTGGAGGGCACTTGACAAGTTTGTGGCTTCTCAGTTGAGTCAAGAAGAGAGGCATGAAATAGAAGGGATGTCAAGCTTTGCAGGTCACAGTGGGTCGGACATGGCATTGTTGCTACTCCAGAATACTAATGAAAGGAACAAGTTCAACCCTTTTCTAAGTGCAGCTTCATCAGACTGTGACATCGGGATATGTGTATTTGAAAAATGA