Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_05854 LG1 86889036 86890745 PREDICTED: B-box zinc finger protein 18-like isoform X1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of circadian rhythm, circadian rhythm, regulation of transcription, DNA-templated, photomorphogenesis, regulation of transcription, DNA-templated, cellular response to blue light, regulation of transcription, DNA-templated, cellular heat acclimation, regulation of transcription, DNA-templated, cellular response to blue light, cellular heat acclimation, negative regulation of photomorphogenesis, regulation of transcription, DNA-templated, cellular heat acclimation, negative regulation of photomorphogenesis, cellular response to blue light, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, negative regulation of photomorphogenesis, photomorphogenesis, regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus
Molecular Function   enables   protein binding, protein binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein self-association, zinc ion binding, protein self-association, DNA-binding transcription factor activity
SNP Position Effect Amino acid change
A/T 86889048 missense_variant p.Thr5Ser
C/T 86889049 missense_variant p.Thr5Ile
T/C 86889101 synonymous_variant p.Ala22Ala
T/A 86889354 intron_variant
A/G 86889759 intron_variant
G/A 86890026 intron_variant
G/T 86890067 splice_region_variant&intron_variant
C/T 86890168 missense_variant p.Pro78Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_05854.1
MQNNTPSNSKPSTSIMRTLCDACESAAAIVFCAADEAALCRACDKKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGGKRTHERYLLFRQRVEFPGEKPGKSENPASQPLDPSETKRGQNALPKIKMGEKQQNHRMPLILTQEPNADEHAMMGTKMIDLNMKPQRIHEPTSNNQVRMPGK*


CDS Sequence:
>Vu_05854.1
ATGCAAAACAACACACCTTCAAATTCAAAGCCTTCAACTTCAATTATGCGAACGCTCTGTGATGCTTGTGAGAGCGCCGCCGCTATCGTTTTCTGCGCCGCCGATGAGGCTGCCCTATGCCGTGCCTGTGATAAGAAGGTTCACATGTGTAATAAGCTAGCAAGCCGGCATGTAAGGGTTGGTCTAGCAAGTCCAAGTGATGTGCCACGCTGCGACATTTGTGAGAATGCACCTGCTTTCTTCTATTGTGAGACAGATGGAAGTTCCCTTTGTTTGCAGTGCGATATGATAGTTCATGTTGGAGGTAAAAGGACACATGAGAGATATCTTCTTTTTAGGCAGAGAGTTGAGTTTCCAGGAGAAAAACCTGGTAAGTCAGAAAACCCAGCTTCACAACCTCTGGATCCAAGTGAGACTAAAAGAGGACAAAATGCACTGCCCAAAATAAAAATGGGAGAGAAACAGCAAAATCACAGGATGCCCCTGATTCTGACGCAAGAACCAAATGCTGATGAGCATGCCATGATGGGAACCAAAATGATTGATTTGAACATGAAGCCTCAGAGAATACATGAGCCAACATCAAATAATCAGGTTAGGATGCCTGGAAAGTAA


Promoter Sequence:
>Vu_05854::LG1:86887036-86889036(+)
TTTTTTTGCGGATAACGGGTACCCGCGGGTTGGGTAGTATACTACCCGTACCTAACCCATTTAGAAGCGGATATTAAAATACTCGTTACCAGTAAATATCCGTGAATAGTAACTACCCGCTGCAGATTTTATTTGCAGATACTCGTGTCCGAGAATGTTTTTGTCATCCCTAAGCAATATCAAAGTGTGGTATTGAATTGATTTATCAATTATATACTAGTGCAAAAAGAGCACGTTCAACGTCTAACCACTCAATAGTCAAAGTTAAGAATGACCGGTGACAAGTTTGTAAATAAATGCAATTATTAAACATCGTTTACAATTATAATTTGATTTAAAAGGATATAAAACGTCGAATGCCAGACGTCAAAAGGTTAGTGAATTCACTAAAAATTTGAGCGAGAGATTGAAAATTTATTCACTTTATCTTAGCGCGCGAGACCCTCTGCTCAAACTTTTTTCAAACGAATTTTGACGACCATCACATGTAATTTATCTTTCATTTGATACAAATGCATGTTAATTAACTACTGATTTTCGTTTTGTTTTCACCGATTATTTTCGTGTTCTTGTCCTTCATAGGCGCATTTTGCTTTCTCTCTCACTGGTGGCAACACTTTATTCCGATGAACTCACCTTTTGAAGGTTAGTTTTCGTTTTCGTTTTGAAAAACTTGTTTGTTGTTTGATTGAACTTGTTTGTTGTTTGTTATTGTTATTTATTGTTGATTCTATATTACCCTTCATAGTTCTGCTTTTCAAGATTGATTAATGTAGTATATTGACAAAATTCGACGTTAAATTAATGTCGAGTATTTTGACAAAATTAACGTCAAATTTTTTAAATTCGATGTCAATTTAACATCTCCTAATATGACATCGTTCTCAAATTCAACATGAAAGATAAAAAATATTCGACGTTGTACTAGTGTTATCACTCTTCACGTGTAGTGTTAAAAATTCTTTCATAATCAATTATCACTTGTAATTTGAAGTGATAGTAACAAGGCAAAAAGAAGATAAACTGACAAAATCTTCTTAAAGAAAATAGAAAAAAAGAAAGAGAACGAGAGAGAAGATTATTTGATGATAATTAACTAAACATTGACTAAGTCATTGAAAGGATGGAAAAATATAACATAAAAAAAGAGATTATGTCTCAATTTTGAGTGCTGGAGATTCCAAGTTAGATTAGAATCAGCATATACAAGATTCAAGTGGTGTGAAACAAAAAGTAAATGTGTGAAAAATTAATGTTAAAGTTGAAACTAATAAAAAGGTGAGAATGTTAAGTTTATCGAATTCACTTGAAAAATACAATACTAATAAATATTAATAAGATCTATGTCTAATCATATAAAATATTAATATCATTTTCTAAAAAAAACTTTAAGATAAGATAATAAATTAATTGATCCTCACTTTTATAATGTTTTACTTATTTTTATTCAATATAAGATTTAGATTTAGTTAAAATTTTATCAGAAAAGTCGAATCTTCAACTAACCAAAATTTAGAAATAATATGGTATAAGATTTTGAATTTTATTGAAGAAAGACACAAATCTAAAAAATAATTAAAAGTAAAAAATTACTTTTTTTTTTATCGTGCAACAACAAGAATAAGAAAAACACATATCAATGCATAAAAAATAAAAAAGAAAACATTCTATAAACACTTATTAGTTTGTGACATATTACACCTATCATTAGACGAAAAGAAGAATCAAAGAATTTGTTATAATTTATGTTTTATATGACAGTATTTGAGTGTAAGCATAAATAAAGAGCATTAAATGGGTCCCAGGCAGGTGCGATATGAGTCGGAGAATAATGCGAGAGGTGCTGTCAAAGCCACACAACATAACACCGAAACAGAGTGCCTTTCAATTTGTGGCTGAGAAGTAATCGCTGAGGCCAACAAAATTCACAAACACACATTTATTGTGTCAGTTCTTATGAATTTTTAAGAATAAATAAACAAACTCTCACTCTTGGATCA


Gene Sequence:
>Vu_05854(+)
ATGCAAAACAACACACCTTCAAATTCAAAGCCTTCAACTTCAATTATGCGAACGCTCTGTGATGCTTGTGAGAGCGCCGCCGCTATCGTTTTCTGCGCCGCCGATGAGGCTGCCCTATGCCGTGCCTGTGATAAGAAGGTGCAATTCTCCACCCTTTTCTTTCTTACTTCATTAACTATGCTTCTCTACTGTGTGCAAACTCTCATCATTCACTACTGTTTTTTCTTTTTTTCTTCCTCCTTTCTTATTCCTTCATGTTGCTCCCTCAATGCCTGTTATATAGTATGTTCTTTTCTGAACCTTTCATGTTTTTTTTTTTAAATTCATTTTAGCAATTTTGTTACGTTTGGTGGAGATTTTTGTCTCTTTTTCATCCACGAAACTTTGGCTGACTTAACAATGTTGAAATCATTGAACCAAATGTTGTGTTGCATCCTTTAACCAAGTCGAGGATTCGATCCTCCCTTTAGTATTATGGAGTTGTAACATCTGGGGACACTTTATCCCTTAGTGGATCAATCTGTTAGACCTGTGAGTTTTGATATCACCTGGTTGAATTAAAAAAACTAACGTGTCTTGGTGTCGGAAAATTTCTTCTTGTCGAAAGTATGGAAAAGGGTCAACTATACTTCCGGATTATACACGACCTTATATTTTTCGAGGTAAAAGAGGTTATTTCAAGATTTGAATCTATGTCGAATCGGATACCAAGGCGCAACTCTAATGTTGTGCCGAGGCTTGCGCTCTGAATACCACTTGGTTATGCCAAAAAAATGTTGGAATCATTGGCTGAACCGGGAGAAAGCAGAAGGTTCCTTATTAAAAATAAGTACTCATGGGATGGTATGTGTAAGTGGTACTTCAAATTGAAGGACTCACCTATTTTGTTATTGCTTAATAATAGGTAAATCCTTTTATCAGATTATCTTTCTTTGGACTTGGGTAGTTATGAAATCCAAATTGGTTTATTTCAAGTCTTGGCTTTTCCTGGCATTCTTTCAAGCAGTGGCTCAAAGTTTAAACTATATTGGGATGGCAGGTTCACATGTGTAATAAGCTAGCAAGCCGGCATGTAAGGGTTGGTCTAGCAAGTCCAAGTGATGTGCCACGCTGCGACATTTGTGAGAATGCACCTGGTAGATACTCTTCTTTCACTATCCTCGTTCTGATTCTAATATTTTCTTTTCCTCATTTGCTGGTTTTCCTTTGAATCTGGATGCAGCTTTCTTCTATTGTGAGACAGATGGAAGTTCCCTTTGTTTGCAGTGCGATATGATAGTTCATGTTGGAGGTAAAAGGACACATGAGAGATATCTTCTTTTTAGGCAGAGAGTTGAGGTATGTATTCCTCTCCTTGCAAACATGAATTGGCCACAGTTTAGGAGGGTCTTAGTGATGCCTTTTGTTTAAAAAAACAACAAAGTTTAATGTCTGCTTGCAACATAGTTTCCAGGAGAAAAACCTGGTAAGTCAGAAAACCCAGCTTCACAACCTCTGGATCCAAGTGAGACTAAAAGAGGACAAAATGCACTGCCCAAAATAAAAATGGGAGAGAAACAGCAAAATCACAGGATGCCCCTGATTCTGACGCAAGAACCAAATGCTGATGAGCATGCCATGATGGGAACCAAAATGATTGATTTGAACATGAAGCCTCAGAGAATACATGAGCCAACATCAAATAATCAGGTTAGGATGCCTGGAAAGTAA