Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_05861 LG1 86974034 86974985 PREDICTED: GATA transcription factor 5-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   cell differentiation, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, tissue development, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, negative regulation of metabolic process, cell wall organization or biogenesis, defense response to other organism, defense response to other organism, positive regulation of transcription, DNA-templated, defense response to other organism
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, zinc ion binding
SNP Position Effect Amino acid change
C/A 86974312 missense_variant p.Ala202Ser
G/A 86974553 synonymous_variant p.Pro121Pro
T/A 86974576 missense_variant p.Thr114Ser
T/A 86974584 missense_variant p.Asp111Val
G/C 86974708 missense_variant p.Thr93Ser
G/A 86974717 missense_variant p.Thr90Ile
G/A 86974796 missense_variant p.His64Tyr

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_05861.1
MECLEAVLKSSFRKDMALKLSPQAFPEDLNMQNVTSSDDLFVDDLLDFSLLENEEPDQHKHSHHSTSVSPRNDNHHMYNCNHSFNDNFNTELTLPAEEVADLEWVSHFIEDSFTKYSLSFPATVTQSLAEKPQEPGNAGFTFKTLVPAKPRSKRTRTGVRVWPLRSPSSFTDTSSPDSPLVICAATSKDHHPEDKRAKKRAASDGGAARRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRQKKEAGPGPDTGSPASVPGF*


CDS Sequence:
>Vu_05861.1
ATGGAGTGTTTGGAAGCAGTGTTGAAGAGCAGTTTCAGAAAAGACATGGCCCTCAAACTCAGCCCCCAAGCGTTCCCGGAGGACCTTAACATGCAAAACGTCACCTCTTCCGACGACTTATTCGTCGACGACCTTCTCGACTTTTCGCTCCTCGAAAACGAAGAACCTGACCAACACAAACACAGCCACCACTCAACCTCCGTTTCCCCTCGCAACGACAACCACCATATGTACAATTGCAACCACTCCTTCAACGACAATTTCAATACCGAACTCACTCTTCCGGCGGAGGAAGTTGCGGACTTGGAATGGGTATCTCATTTCATCGAAGACTCTTTCACCAAATACTCTCTTTCCTTCCCCGCAACCGTCACGCAGAGCCTCGCTGAGAAACCGCAGGAACCGGGAAACGCCGGTTTTACTTTCAAAACCCTCGTTCCGGCCAAGCCAAGGAGCAAGCGAACCAGAACCGGGGTTCGGGTTTGGCCGCTGAGGTCACCCTCGTCTTTCACCGACACGTCGTCTCCCGACAGCCCTTTGGTAATTTGCGCAGCCACGTCCAAAGACCACCACCCGGAGGACAAGAGGGCGAAGAAACGGGCGGCGTCGGACGGGGGAGCGGCGAGACGGTGCAGCCATTGCGGCGTTCAGAAAACACCTCAATGGCGAACAGGACCGCTCGGGGCGAAGACCTTGTGCAATGCCTGTGGAGTTCGGTACAAGTCGGGTCGGTTATTGCCCGAATATAGACCCGCGTGTAGCCCTACTTTCTCGAGCGAGTTGCACTCGAACCACCACCGGAAGGTTTTGGAGATGCGGCAGAAAAAGGAAGCGGGGCCTGGACCGGACACCGGTTCGCCAGCGTCGGTTCCCGGTTTTTGA


Promoter Sequence:
>Vu_05861::LG1:86974985-86976985(-)
GATCACCTCTTATTGAAGTTATCAAATAAATAATGCTTAATTATAATAATTTCAGTTTGATCATTATCAAGTGTATTAGGATGATTAATAGAATCATGAATAATCCTCAAAATATTATTTTGTAAGCAAAAATATGTACATAAAGTAGTTGACTTTATCGTTTTGTCATTAACCAAAATCAGTTGCAATAGTAGATGTTTCATATGAATGTTCTCATTCCCTTAGTTCTTCTATTGCACTTGGTTCCTATAATGTACTATCCTCATAACGTTGCTATTGAAAATGATCATATATATACTAATTTCATATCCATCAGTAAACATGTTAGTATAAGCATCTTTAATTTTAATTTCTTCATCCGTAGGTTCAACAACATCTTTAGTAAAATTAATATGTTGATCTATAAGACATTAGTATGTAGGAGTATCAATATATCCATGGTGTGATGTGATTTTGTTTTTGGTTGATTTGAACTTTATACATTTTTTATAAGCTTTAACTTAAATGTGAATTTGATATATCTTTTAACAATATCTTTTAACAAGTTTAATAAAATTAATATAATTAAGTTTAAAATACTATATTAATTTATTTTTTTAAAATTAAAGTTCAAAATTTTAAAAGTTTGAATCAAAACGCATTCTAATTTTACATTCAAAGGCCTAAAAAATTTATTGCATAATTATATTAGTTAAAAATATAGTCATTATTATTTATTTTTTTATACTCAAGACGCTATTATTTTTCATTTACTTAACTGTTTTGATTGTCAAAAATATACAAATAACGAAATTTACATGTTTTAATTGAGTCAGTAATAATTATGATTAGTCTTTTTATTACTATTAATATTAATAATATAATTGTTATGATTTCAATATTTGAAAGTTAAATTTCAATTCCATGTTTTGATTTATTAATTTACATTTATCTTCTAAATTTTAAATACTATTATTTCTATAATTAAATTAAATATTATTTAACATTTTTGAAAAATAAGATATTAAAATAGCTAAGATTTTTTTCTTCCAACATTGAGTTTTAAAATTTCAATATCAGTTCAATTTTGTTTATTTCAGATAATAGATTGTAAATCATGTTCATATATTAAATACTATTTTTATCTTCAATTTATGTATAATGTTGTATTATGATGTGTGAAGTTTTAATTTGAATAAAAATTATAGATTTAAAAATTTCAATTTAAAAAAAAAGCAACAAAAATTAAATAATAATAATAATGAAATACATAACGGTGGTTTTTTTATTTAAAAAAACAAGTATAATAAACACTTATAAACATTAATCAAGTTAACATTTGAAATTTAAAATCGTAACAACAACAACCATAAATTTGGATTTTTTTCCCAAATTTGTAACATGTTAAAAGGCCAATGTTCTTACAAAATCATACTAAAAAGATATGAAAAATGTAACGTCTCATTTTTTTTAACAATCATATTATTAGATATAATATTTTAATATATTTAACTTTTCAGTACACATATGGTGATATTGTTTTAAAATCGAGTAACTTATAAACTATTTCATTTTATTTTTAAAAGCCTTTAATCTGATAATTATGATATATGATATAGTAAACATTTAATAAAAAATAAATTAAAAGATTATATATGTTTAATCCTATGTATAAAGTATGTATATTAATAAAGAGCATCTACCGTTGATATTTTAGTATTTATTATTCTTAATGTATAAAACAAAGTTGTATAATAGTGATGGAGAGAGTGGAGAGTTGGGAGGAGAAGATTGGTGAGAAAGAGGAAAAAGTAAAATTATTCATTTATTTATTATTTAAAGAAAGAGGCACATTTCAGCCCTCATTCAATGATGCTTTAACCAACGCACCATCCTCCGCTCATTCTCTTTCAATTTCATCCCTCTCTTCTCTCTCAGGTAACAACTGCAACTCCATAATCCTGTTTTCAATTTTCAATTTTTTTGTAAAAATTAATGAAACATTTGTGTTTAAGGTTGCA


Gene Sequence:
>Vu_05861(-)
ATGGAGTGTTTGGAAGCAGTGTTGAAGAGCAGTTTCAGAAAAGACATGGCCCTCAAACTCAGCCCCCAAGCGTTCCCGGAGGACCTTAACATGCAAAACGTCACCTCTTCCGACGACTTATTCGTCGACGACCTTCTCGACTTTTCGCTCCTCGAAAACGAAGAACCTGACCAACACAAACACAGCCACCACTCAACCTCCGTTTCCCCTCGCAACGACAACCACCATATGTACAATTGCAACCACTCCTTCAACGACAATTTCAATACCGAACTCACTCTTCCGGTACTTCTCTTCCCATTTCGCGTTAAAAACTTTTTCGTTTCTGTTTTCACCAAAGTCTTAATTTTTACAGGCGGAGGAAGTTGCGGACTTGGAATGGGTATCTCATTTCATCGAAGACTCTTTCACCAAATACTCTCTTTCCTTCCCCGCAACCGTCACGCAGAGCCTCGCTGAGAAACCGCAGGAACCGGGAAACGCCGGTTTTACTTTCAAAACCCTCGTTCCGGCCAAGCCAAGGAGCAAGCGAACCAGAACCGGGGTTCGGGTTTGGCCGCTGAGGTCACCCTCGTCTTTCACCGACACGTCGTCTCCCGACAGCCCTTTGGTAATTTGCGCAGCCACGTCCAAAGACCACCACCCGGAGGACAAGAGGGCGAAGAAACGGGCGGCGTCGGACGGGGGAGCGGCGAGACGGTGCAGCCATTGCGGCGTTCAGAAAACACCTCAATGGCGAACAGGACCGCTCGGGGCGAAGACCTTGTGCAATGCCTGTGGAGTTCGGTACAAGTCGGGTCGGTTATTGCCCGAATATAGACCCGCGTGTAGCCCTACTTTCTCGAGCGAGTTGCACTCGAACCACCACCGGAAGGTTTTGGAGATGCGGCAGAAAAAGGAAGCGGGGCCTGGACCGGACACCGGTTCGCCAGCGTCGGTTCCCGGTTTTTGA