Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_05911 LG1 87788489 87789648 PREDICTED: GATA transcription factor 18-like isoform X1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of flower development, regulation of flower development, negative regulation of transcription, DNA-templated, regulation of flower development, cotyledon development, flower development, embryo development ending in seed dormancy, cotyledon development, negative regulation of transcription, DNA-templated, embryo development ending in seed dormancy, negative regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of flower development, regulation of flower development, embryo development ending in seed dormancy, negative regulation of transcription, DNA-templated, regulation of meristem structural organization, negative regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of flower development, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, embryo development ending in seed dormancy, regulation of flower development, cotyledon development, negative regulation of transcription, DNA-templated, regulation of flower development, negative regulation of transcription, DNA-templated, regulation of flower development, regulation of flower development, embryo development ending in seed dormancy, cotyledon development, cotyledon development, negative regulation of transcription, DNA-templated
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   sequence-specific DNA binding, protein binding, protein homodimerization activity, DNA-binding transcription activator activity, RNA polymerase II-specific, zinc ion binding, DNA-binding transcription factor activity, protein binding, DNA-binding transcription factor activity, protein binding, protein homodimerization activity, protein binding, protein binding
SNP Position Effect Amino acid change
G/A 87788513 synonymous_variant p.Ser230Ser
G/A 87788678 synonymous_variant p.Gly175Gly
A/T 87788808 downstream_gene_variant
T/C 87788974 downstream_gene_variant
T/G 87789375 missense_variant p.Ser92Arg
C/T 87789412 synonymous_variant p.Arg79Arg
C/T 87789423 missense_variant p.Glu76Lys
C/T 87789425 missense_variant p.Gly75Asp
C/T 87789437 missense_variant p.Arg71His
T/A 87789439 synonymous_variant p.Thr70Thr
G/A 87789443 missense_variant p.Ser69Phe
A/C 87789445 synonymous_variant p.Pro68Pro
G/A 87789464 missense_variant p.Thr62Met
C/T 87789471 missense_variant p.Asp60Asn
A/G 87789473 missense_variant p.Val59Ala
G/A 87789499 synonymous_variant p.Ser50Ser
G/A 87789502 synonymous_variant p.Tyr49Tyr
C/G 87789613 synonymous_variant p.Val12Val
C/T 87789638 missense_variant p.Cys4Tyr

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_05911.1
MHRCCGNSQGHVMGTCTCTMLHTETNSYSILFSMPNTHAPYYDYEHEVYSSYTPSPSSVDCTLSLGTPSTRFTEGEELRNRHEPRSSVTNFSWDLLQSKHTTQSQTNKSTRATNAASNNDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEERRASAAAATSAAVPGSVMESSRSYGNQSSSWYSHSQMGNELRFMEDSDDRDSENGIPFFSWNLNVPDRTSMVHDYTR*


CDS Sequence:
>Vu_05911.1
ATGCATCGTTGTTGCGGGAACTCCCAGGGTCACGTGATGGGCACCTGCACATGCACCATGCTTCACACCGAAACTAACTCTTACTCCATCCTCTTTTCTATGCCCAACACCCACGCTCCCTATTATGATTACGAACACGAAGTCTACTCCTCCTACACGCCCTCTCCTTCTTCCGTCGACTGCACGCTCTCCCTCGGTACCCCTTCCACACGTTTCACCGAAGGCGAGGAGTTACGGAACCGCCACGAACCTCGCTCTTCCGTCACCAACTTCAGCTGGGACTTGCTGCAATCCAAACACACCACGCAATCTCAAACCAATAAATCAACCAGAGCAACCAATGCCGCCTCCAACAACGACCCTCTCCTCGCTCGTCGCTGCGCCAACTGCGACACCACTTCTACTCCCCTATGGAGAAACGGCCCTCGTGGCCCAAAGTCACTATGCAATGCTTGTGGGATCAGATATAAGAAGGAAGAGAGAAGAGCATCGGCTGCCGCCGCCACGTCTGCGGCGGTTCCCGGCAGCGTAATGGAATCATCTCGCTCGTACGGCAACCAAAGCAGTTCGTGGTACTCACACTCGCAGATGGGGAACGAGTTACGTTTCATGGAGGATTCCGACGATAGAGATTCGGAGAACGGCATTCCGTTCTTCTCTTGGAACCTTAACGTTCCAGACCGAACGAGCATGGTGCACGACTACACGAGATGA


Promoter Sequence:
>Vu_05911::LG1:87789648-87791648(-)
TGTCGAACTATGGTTCATCAATCTCTAGACGATCTGATTCTCTCTCCTTCTCTTTCTCTCTCCGTGAATGTTTTTGAATCTTTTGATCGAATGGGGTCGATATTCCAGAGGAGGGTGTGTTGGGTTTGGGCATGATGAATGTGGGTCCCTTTTGCGTTATTTTATTAATTTTGAAGAGATTTTTGGTTGGTTTTAGTAATTTATTCGGATTTGATTTAAAAATTTTAGAGAGGCTTTATTTCTTTTTGGTATAGGAGTTTCTATCTTTGACCCATAGAAATGTGTTGTTGTCTAGTGGACTAGACACATAAGAAGCCAAGTAAGAAGCCAGGCAGAGTTGCTTTGATGATTGCAGGGTATCTCATTTGGGATACCTTTATCTCTTTCTCTCTCTTGGCCTACTTTTTCCCAGTGTGATCCAAAAACCAATCCAAATCTCAGGATCTTCTCATCTTGATCAGTTTTTCTTCTTCTCCTTCTTCTTCTATCTACGGCTACTAATACTGTTGCCCCCATCAGCAACTGCTCCTAAAAAGCAATGTTGGTGTGATGGGGTTTGGATTCGGGGCATGAGGTTACTATCATGACAATTGACGAACTTGGCTTTGTGTTTGGATTCACGTGATCCTCACAGTACGGATGGAAAAAACTGGTCGTCGTGTTGTTGTTCCTGCAGATTTGACGGATTGAACGGCCTATAACAACTAACGGAGATGTTTTCTACCATTTCAAACAAACAATGGTCATTGTTCTGTTCAACTTCAAATCATAATAATAAGTCTTGGCACATAAGCACACCCGCCACTAACCCCACCAATCCCAGCACAACTCATCAAAGAGCGTGACCACCACCAAAATTAAATTAAAAACGTTACTTCGCTAGGATAATTTTTAAGTCATTTTATTGCTACCTATAAAAGAGAGTGAACACAGTTTAAATAGACCGAGTCAACGAATGAAGGGTTTGATTAATTAAAATTAGGTTAAATCGAAATAGAGAGATGGATTGGCTGAATTAGGTTAAAAGAAATGAAATTGCAGAAGTAAAGAGTTGAGAATATGAAAGGTTTGGCAATTAATATATGGTATTACCAAGGAAGGGGAAGGGTGTAGGCGAAAGTAGAGCAGTGGTATGTGGTTAATTAGCAGTATTGGGATTAGAGCGTGTTAGGGAAGAGAAGAGAGCGTGGGAGTGGGAAGGTGGAAGGATAGATAGATAGATAGATACACTACTAAGACTACTACTACTATTCCATTTTCCTTGGGGGATGGCAGTGGCAGAGATACGGATACAGACAGAAGTTTTGATGTATTGGGTTTGCGACTAAAAAAGCCTCGTGATCGGAGAAGGCAGATCCGTGGACGAATACTGTTACCACTGTCACGTGCCCACTTTTGACTACCCAATGACCAAACCCTCACCACACCACACTTCCTATGCTACCCCTCTCTCTGCTATAAATTAACATCATGCATGAGAAATTTTTATAAACTCACAAACAGTGCCGCAGATAGAAACTCTCAAACGCTTCCTTCCACTCACTCCCTGACTACTCTCACTCAGTACCACTCTTCCCCTTTCTCTTTCTTTCTCCCCAACACATCCCCAGCCACTGGGTCCCTCTCTGTTTTTCCATGTCTTTATAATTTTCCTTCATGCCCCACTATATTATATTGCACATACATTTGTGCATCTCTCTATTCGCAGTTAACGACAACGTGGACTGCACCTGCTGACTCGTATTTCGCCATTTTATTAGCTTATAAAGCTACCTGACAACACCCACTTCTCATTTCCCCCGTACCATTTTAACTCTTTCTTCCCACTGCTTCCTACCCTCTTTACATTTCAAACGTTTTATCATTACATTTCGCACCCACACTCCACTTCCTCCTTCTACTTCTCTGCCCTTTCCCTCTCTCTTTATCCCTTCTTAAACCCCAACACTCCCACATCGCATACCATCGCCTCCCCTTCCCACACCACCAACCCAATAATC


Gene Sequence:
>Vu_05911(-)
ATGCATCGTTGTTGCGGGAACTCCCAGGGTCACGTGATGGGCACCTGCACATGCACCATGCTTCACACCGAAACTAACTCTTACTCCATCCTCTTTTCTATGCCCAACACCCACGCTCCCTATTATGATTACGAACACGAAGTCTACTCCTCCTACACGCCCTCTCCTTCTTCCGTCGACTGCACGCTCTCCCTCGGTACCCCTTCCACACGTTTCACCGAAGGCGAGGAGTTACGGAACCGCCACGAACCTCGCTCTTCCGTCACCAACTTCAGCTGGGACTTGCTGCAATCCAAACACACCACGCAATCTCAAACCAATAAATCAACCAGAGCAACCAATGCCGCCTCCAACAACGACCCTCTCCTCGCTCGTCGCTGCGCCAACTGCGACACCACTTCTACTCCCCTATGGAGAAACGGCCCTCGTGGCCCAAAGGTACAAACATTCATTCATTAACAAATCTTAACAGCATATTCTTCATTTTCCCGGTATGTCTTATTTACGAACTTCACATATTTTATCATTTTCAATTAAGAGTATAAAATGTTTCAGACAAGACGAATATACGACACTACCACTTTCTTATGTTAATTGTTTATGTCAAAGTTGTGCCTTGGTAAATGGAACTGGACATATTTTATAAAAGTAACATCAAAAGCTTCTACTTGGTAACCAGGTTTATAATTACGCTTTTTTTTTTAAAGTAACACCAAAGAAATAAGTTCGTATCTGTACATTTTTTTAAAAAAAATCATTGAATTTGCAACAATATGTTGAGACATTGATAAGCCATTTATCTGATGTATTTTGAAACCCTGAAAATAATTAGTTATCAACTTATTCGATTTTGTTAACGTTGCGTTTGAATTGAATTGATGCAGTCACTATGCAATGCTTGTGGGATCAGATATAAGAAGGAAGAGAGAAGAGCATCGGCTGCCGCCGCCACGTCTGCGGCGGTTCCCGGCAGCGTAATGGAATCATCTCGCTCGTACGGCAACCAAAGCAGTTCGTGGTACTCACACTCGCAGATGGGGAACGAGTTACGTTTCATGGAGGATTCCGACGATAGAGATTCGGAGAACGGCATTCCGTTCTTCTCTTGGAACCTTAACGTTCCAGACCGAACGAGCATGGTGCACGACTACACGAGATGA