Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_05923	LG1	87943462	87946606	serine/threonine-protein kinase PBS1	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	seed germination, root development, calcium-mediated signaling, protein phosphorylation, abscisic acid-activated signaling pathway, abscisic acid-activated signaling pathway, protein phosphorylation, root development, protein phosphorylation, abscisic acid-activated signaling pathway, abscisic acid-activated signaling pathway
Cellular Component	located in	nucleus, nucleus, plasma membrane, nucleus, nucleus
Molecular Function	enables	protein serine/threonine kinase activity, protein kinase activity, protein serine/threonine kinase activity, protein kinase activity, protein kinase activity, protein serine/threonine kinase activity

SNP	Position	Effect	Amino acid change
T/A	87943672	missense_variant	p.Glu437Asp
A/G	87943953	synonymous_variant	p.Asp388Asp
A/G	87944021	upstream_gene_variant
A/G	87944045	upstream_gene_variant
A/T	87944192	upstream_gene_variant
T/C	87944195	upstream_gene_variant
T/A	87944257	upstream_gene_variant
T/C	87944595	upstream_gene_variant
G/A	87944598	upstream_gene_variant
A/G	87944746	upstream_gene_variant
T/C	87944768	upstream_gene_variant
A/G	87944820	upstream_gene_variant
T/A	87944823	upstream_gene_variant
G/A	87944963	upstream_gene_variant
A/C	87946089	splice_region_variant&intron_variant
T/G	87946095	intron_variant
T/C	87946100	intron_variant
T/A	87946193	intron_variant
C/G	87946328	synonymous_variant	p.Ala93Ala
C/A	87946555	missense_variant	p.Ala18Ser
A/G	87946559	synonymous_variant	p.Asp16Asp
T/G	87946565	synonymous_variant	p.Thr14Thr

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_05923.1

MSSPNKKSEPHNNTPDDATPDDSTPDNSTPDDSTPDNATPDNATPDKSNGSHKGSSSSSTHSPPTKEAHKSLSHEKLTESTNEDGTNKAALGAGIGVGFVILVLLVVCLVWCCRRKKRKQNKNYYYASPSKGKAANNYYNTGQQSLPHWQPGAGPHMGEHVVRVQQQQQQQGMGMGMGMQMGMQMGMGMGPPSGGWGTSHPQMSSGDMSSNYSAGMGSSSPGLPLTLKSGTFTYEELAAATKGFANDQIIGQGKGMPTMDWPTRMRIAIGSAKGLAYLHEDCSPRIIHRDIKASNVLLDLSFEAKVSDFGLAKLTSDTNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGKRPVDPTNAMEDSLVDWARPLLNKGLEDGNFGMLVDPFLEGNYNAQEMTRMAACAAASIRHSAKKRSKMSQIVRALEGDVSLEDLKDGMKLTTGNGNSGAYPSSSGSSEYDTMQYNADMAKFRQAIMSSQEFNDSGELSSKEIGYH*

CDS Sequence:
>Vu_05923.1

Promoter Sequence:
>Vu_05923::LG1:87946606-87948606(-)

ATTTAAATTTGTTGGACTTTTTGTTTCTAAGTTCTTATATGTTTCCTTTGCTTTGGAATCCTTATTTGGGTGAATTAGTTTATAAATTTGTTACACTTAATTGATTTGAATAAATGAATATATTTATGGTTTATGAACATTTTATGTATATGTTTATGGTTTATGAACATTTTAGTTGTTCCACCACCACAAGTGTACAACTCGTCATAGTTCGACAATAACGCATGTATCCAGATTTTAAGTCGAGATGTATTACCTATTTAGGTGTTGCATTTAGTTTGAACTAAAAATATAATGTTACTTTGTGAATGTTGTGTTAGCATCTTAATATTACCTTACCCTTTTATCTTAGATTGTTTTCTTTCTCTTTTGCAATGATTACTTTAAATGGTGTGAAGTTGGAGGGAAGTCCTTCCAATTGATTCAGCTTTGGCGGGCAAAACAATGAAATAGTTAGGTTTTAATTCTATAAACGTAAGTCTTCAACTTTATAAATCAAAAGGTTTCTAGTTAGTTATCGTATTTGTACCACTTATTTTAATAATTTTATATTAGTAAAATAAGATATTACATATTGTTTTGGATGTATTTTTTTTACGAATTTTATTATTTGTGAAAAATTTTGTATGTAATATTATTTACAGAAATTTTTTTATATGTAAGTTTAATTATGCCTGATTTTGTTTTTCCATATATAATCCGTAGATAATATATAATTACTTATAGATTTTATACATTACATCTAGATTTTGTTTCCGAAAAAAATCAATTTCTTTTGTAGTGTTAAATCCAGTTATAAAAACAAACAAAACTTTAAAGCAATTCTTCAACTATCAAGAACAATAAGAGATAGCTGCAGAATTTAAAAGCAATTAAAAATACCACAAATTGGACAAGAAACATAAACGGTAATGCAGAAAGATAAAAGAAACAAAAATTAAAGGCAAACACAAATTAAATGGCAGTATTTAAAGACAAGAGAAATTAAAGACTATTAATTGGAAAAGAAATTTAAAAAAGAAAGTGCATTCTGTATTGAATTTGAATTTTACAAAAAATTGGAATGTATACAAGTTTTATTGAACTTCATCTTTTTGATCTTCAACCTTAATTAGTTTAACATTTTTGTAACATACTTTACAAATGAAGAATAAAATGGAGAGAAATTGAAGTTAGTTAATTATAAAGCTGTTGAAATTGTTATAACCTTAATTCTGAAGCATCTTTAACACAAAATGATAGAAATAACAAAGATATACTTTCAAAAATGTATGTTTAAGACTCGCACAGAGAAGGAAACCTATGCAATATATTGAATACCATAAAAAAACACGATCTTGATATTGTGCATCATCATTTATGGTATCTAACATTCAATATACTAATGTATAGCTTTTTTCTCTCTCTTTATTTAGTCACTCATAAGTTTTGTAAATTTAATAATTAAGGTTGGCACTTACGTATATAACAGGTAAAACTGTTTTCCATGAGTATTTTTCTAGCCATACAAGTTACAAGATATGCAAAAGAAGCAGAGAAGAAAAATATAATGAAAAGGTTTATTTGGAATTGAAAATTTGGGGGATGGGATGGGAGGTTGAGAAATCTATTTGTGGTTAAAATTTGTAAGGTAAGATGGATGATAGAAGGAAATGATGGGTGTTGATGATAAAATAAAGACCAGTCAGAAAATGGTAAATCTATAAATGACATGAACTAAATAAGAGGTGCTAAGGGCCCTCCTTTGTAGGGAAGGAATTGTGATCGATTCCTTTTGTATTACCACTTTTTCACCAATGCAATAGTTTCTTCCATTTCGTTCTTTCGATAATCCTTCCAGGTATTACCATTTCTCTTCCCAAACCATTTTCTCATTTCTTTCTTTTAATCTCTTTTCTCACAGGGCTCAAGCTTCGTGAAAAAAAAGGAGGGGAAATCCTGGTGTTCCGGCATTTCGTGGTTTTCAACGTATAAACCATTTCGCCGGAACCCAAGGAATA

Gene Sequence:

>Vu_05923(-)

ATGTCTTCCCCTAATAAGAAATCTGAACCCCATAACAACACACCCGATGACGCCACCCCCGACGACTCCACCCCCGACAACTCCACTCCCGATGACTCCACACCGGACAATGCCACGCCCGACAATGCCACGCCCGATAAATCAAATGGATCACATAAAGGTTCCTCATCGTCGTCCACTCATTCACCACCGACCAAAGAGGCACATAAATCGCTGTCGCATGAAAAGCTGACAGAGTCAACGAACGAGGATGGCACCAATAAAGCAGCATTGGGAGCGGGGATCGGAGTTGGGTTTGTCATTCTGGTGTTGCTCGTTGTGTGTTTGGTTTGGTGTTGCAGGAGGAAGAAGCGAAAGCAGAATAAAAACTACTATTACGCATCTCCTTCTAAAGGAAAAGCAGGTAACATTTGAATTTAGATGTTGTATTCAGATTCTCATCTGATAATTACGTTGTCTGAAATAACATTGGGTTTAAGTTAGTGATTGATGATTAATAAGGTATAAAATGATTTGTTCAGCTAACAATTATTACAACACTGGACAACAATCTCTTCCTCATTGGCAACCAGGAGCTGGTCCTCATATGGGGGAGCATGTTGTGAGGGTTCAACAACAGCAACAACAACAGGGGATGGGGATGGGGATGGGGATGCAGATGGGGATGCAGATGGGAATGGGAATGGGTCCTCCTAGTGGTGGCTGGGGAACATCACATCCTCAAATGAGCAGTGGTGATATGAGCTCTAATTATTCAGCGGGTATGGGTTCCTCATCGCCAGGCCTTCCTCTCACGCTCAAGAGTGGTACCTTCACTTATGAGGAGCTAGCAGCTGCCACCAAAGGTTTTGCCAATGACCAGATTATTGGACAAGGTGGCTTTGGTTATGTCCATAAGGGAGTTTTGCCTAATGGAAAGGAAGTGGCTGTTAAGAGTCTAAAAGCAGGTAGTGGACAAGGAGAACGCGAGTTCCAAGCTGAGATTGAAATCATCAGTCGAGTTCATCATCGTCATCTTGTGTCACTTGTTGGATATTGCATTTGTGGAGGCCAAAGAATGCTGGTCTATGAATTTGTTCCCAACTCAACTTTGGAACATCACCTTCATGGTATCAACATAATTTATTGTTTTAACTCTTGTACTGAAAACACTTCTTGTTATGATTATTTATGATGAATAATAACAGAGCTTATGATTTGATGGCCACAGGTAAAGGTATGCCTACCATGGATTGGCCTACTAGAATGCGAATTGCGATTGGATCTGCCAAAGGGCTTGCCTACCTTCACGAAGATTGTAAGCATTACATTTCAATTTCTTCTGCTTATCATATTTTTTGTTTTGCTTCATTGTCTTTCTCATATTTGCAACATTTATAAATGAACTCAGGTAGCCCTCGAATTATCCATCGCGACATTAAAGCTTCTAATGTCCTTCTTGATCTAAGCTTTGAAGCCAAGGTTGAACAACATACATTTACTATTTTTTAACTACTTTAGTCGTATATCGCACATATTATACAAGTAAGTTTACACTCCAATGTGCATCTTGGTCAGGTGTCTGATTTTGGACTTGCAAAGTTGACCTCTGATACTAATACACATGTCTCAACTCGTGTCATGGGAACATTCGGGTAATTCTCCCTTCGCGCTCTAATATTTGTCGAACCATAAAGCAAGTAGAAAAGAAGAATATTAATAGTTTTTCTTATATAAATACAAAGTGCTTTTCTATAAATAGACATAATTTGTCAAAGCAGCCCTTAAAAGTGATAACGTCATTAAATATTTGTACAATGTCTGACCGAATACACGATATATCGTGTGTGGTTATCCTTAACACTCAATAACTTCATTAACTAGTGTCTTTGAACATTATACACTTACAAGCTTTTGCATAAGATAATTTGCATGAACACTGTTGTTTAAATAACCACAGATGTTGTTGATTTCACAATGTCAAATCATTCAGCATGCAGAACATATAGAAAAGAAAATAAATTCTTTTCCAATGCATGGTCTGTAAAAAAAAACAAGTGGCATAAAATCATATTCATTAATTAGTCCAACTGAATAGTTTAATTTTGTATATTAAAATAGGTACTTGGCACCAGAATACGCATCAAGTGGAAAATTGACAGAGAAGTCTGATGTTTTCTCATTTGGGGTCATGCTTTTGGAACTCATAACAGGGAAACGACCTGTAGATCCAACAAATGCCATGGAAGACAGTTTAGTGGATTGGGTTAGTACTATATATTACATTTCTATCTACAATAGTTTGAACTATAAATATATACATTTCTATCCTTTTATCATTTGGAAGAGATTTCAAATATACAGTCCATTAATCTCCCAAAAGTATAAAAGTATATACATGATGGTTCTTTTTAAAAAGGTTTATTAAGAGAAGATTAATATATATCACATAAGTTTTTAATATAAAATTTTGAGATATTAGATTTATGAGTTTTTTTTCTTTTACAGTATTTAATTTTGTTATTTTTATCGATTGTATGATTTAGATTCACATTTAAATATTTCCAAGTTCGTCCATATTGTCCTGCAACTTTTTTTTTTTTCAATCCAAATGTGAATAAAGAACTATATGTACCGAGCAGGCTCGACCACTCCTGAATAAAGGATTGGAGGATGGCAACTTTGGAATGTTGGTGGATCCATTTTTGGAAGGTAACTACAATGCCCAGGAAATGACAAGAATGGCAGCTTGTGCAGCTGCAAGCATTCGTCATTCTGCTAAGAAGCGTTCAAAAATGAGCCAGGTATATATATACACCTAGATCTGTTGATTATTGTTTTATACCATTGTAATTACCAAGTATATATTGTCCTCATGGATAGTACCAGAACAAGAATATGTATTAATTTAACGTATGTATGACTTAACTATGGGCAGATTGTGAGAGCACTGGAAGGAGATGTCTCATTGGAAGACTTAAAAGATGGAATGAAACTTACAACAGGGAATGGGAATAGTGGTGCCTACCCTTCTTCGTCTGGAAGCTCAGAATATGATACCATGCAATACAATGCTGATATGGCAAAGTTCAGACAGGCAATAATGTCGAGCCAAGAATTTAATGACAGTGGTGAGCTTTCCAGTAAGGAGATCGGTTATCATTAG