Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_05933 LG1 88089452 88091035 hypothetical protein
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, response to auxin, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, response to auxin
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, RNA polymerase II-specific, sequence-specific DNA binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
T/A 88089603 missense_variant p.Asp142Val
G/A 88089622 stop_gained p.Gln136*
A/G 88089866 intron_variant
A/G 88089912 intron_variant
C/A 88090202 intron_variant
G/A 88090208 intron_variant
A/G 88090286 intron_variant
G/C 88090432 intron_variant
G/C 88090455 intron_variant
C/T 88090474 intron_variant
G/A 88090548 splice_region_variant&intron_variant
C/A 88090744 stop_lost p.Ter58Leuext*?

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_05933.1
MMLFSHQYPGAFTEVTPPQQGKEAKPRRKRNKNGAAATPKKRKLTADQVSLLEKNFCSEQKLESERKDQLAFELGMDPRQVAVWFQNRRFRWKTKKLEEEYSNLKNVHETTMLQKCHLETRVLKLEEQLLEAKKEIQQLQERDERAASKDLLEAVNPPFPEEFRVEEYDYGDVFYIPETHYINGMEWINLYM*


CDS Sequence:
>Vu_05933.1
ATGATGCTCTTCTCTCACCAATATCCTGGTGCATTCACTGAAGTAACTCCTCCTCAACAAGGCAAAGAAGCCAAGCCAAGACGCAAGAGAAATAAAAATGGTGCTGCGGCCACCCCCAAGAAGAGAAAGCTCACTGCCGACCAAGTTAGTCTTCTCGAGAAAAATTTCTGCAGTGAACAGAAACTTGAATCTGAAAGGAAGGACCAACTCGCATTTGAGCTTGGTATGGACCCTCGACAAGTTGCGGTATGGTTTCAAAATCGACGTTTTCGTTGGAAGACCAAAAAGTTGGAGGAAGAGTACTCCAATCTTAAAAATGTTCACGAAACCACCATGCTTCAGAAGTGCCACCTTGAGACTCGGGTATTAAAGCTGGAGGAGCAGCTTTTGGAAGCAAAGAAGGAGATTCAGCAGTTACAAGAGCGTGATGAAAGAGCCGCAAGCAAAGATTTGCTGGAAGCTGTCAACCCACCATTTCCTGAAGAGTTTAGGGTGGAAGAATATGATTATGGTGATGTTTTCTACATTCCGGAGACTCATTACATCAATGGAATGGAGTGGATTAATCTCTACATGTGA


Promoter Sequence:
>Vu_05933::LG1:88091035-88093035(-)
ATATTTAAATTAAAAAAATAAGAATTCTTTCATAAGAAAATAATATTAAGAAAAAATAATCAAAATTTAAGTCAGTCATATGTTAAAACAATAAGTTATTTTTAGCTTAGATTCCCTCTGATTTTAACATTTAACACATTTCAAGTAGAAGATGACACAAACTTGACATGTCACTAACCTAAAATTTGATATGTGACTCTTCCCAATGGTATTAGTGCCAATTTAACCTAATGTCCATATTGAGTTTTTTTTTTATACAAAAATAGGAATTGAAATGAGTTTTTTTCTTTAAAAAAACAAAGACTAAAATATAGGACCAAAACGAATGAAAGATGTAAATATAGGAATCAAATTACTAATTAAACATTTTTTTTCTTTCTTCACATTTCATTATTAATAAGTACAAACAAATATTAAAAATTTATCGCTTTGTCTACTTAGTCAACACACATGATGAAACGAAATATTAAAGTCAGGGTGTGAAATTAAGTTAATCTAGTTTACACAATTTAGTTCACCATGAGTTGAACTAAAAATGAGTTAGTTCAATTTGGTTCACTTTTTAGCCAACAATTCTAACCACCATGGGTTAGTGAGTTAGTAAGTTGACTCACTTCAGGGTATTTTATTCTTTTAATTTATACATTGATTGTATTACAATCAAAGTGGTTTTATTAGACTCATTTTTTATAATAGTATAATCAAAGTGTTATCTATTTCAGCAAACATTATATATAAAGATAATAATTAAAAATTAAAGTGTCAACTTAGATAAAGAAATAAATTCAACTTGGAATTCAAACATTATTAATCAACATTCTAGTATTTAAAAATATCAATTTATCAACTAACATGATTAAAAGTAGTAAATAATAATGATTAACCAAGTTACAAAAAAGTGGAAAGAAACTAATTAATTATTGTTCTTAAAGGGTTAAAGTCATCTTCAATTGGGCTCAAACTCTTTTAACTTATAGATTAAGTGAGTTAAGGTCAATTTAACTCACATTTGAAATCTTTTTTTATCTCAATTCATAATAAGTCAAATTGGTTCACGGATTGAAACTCAATATTTCTAAAAAGAAAAATGAGAATAAAAGTTTAATTTTAATCCCCTCAAGAGGAGAAAGTAATTAATTATTTATAATTTTGTCTCATAAATCAATATTAATATTGATGGATTATGTTAAAATCCTTCAATAACTATATGCGTCCAATTTATAATATATAAGTGATTAAAACTTTAACTTATAATTTAATTCAGTTTTACACTAAAATATTTTTATGTTTTATGTGTCACGTATTTTTATCATATTTAATTTTCATCTTAACTTTTTTATATTTTTTATTTAAATTTAATAGTAAATATAATTAATTACTTTAAACAACCCATTAAATAAAAAAAGTAGTTTTATAATTTATTTAATTTAATCTTTTTAAATAATTAAATCTACTACCAACTTTTCACTTTTTCTATTAAATTTTTTCTTTCATTTTCTGAATTTAAACAATTTTATTCTTGAGGTACGTGTTTTCTTCGTTTCTTTAGTTTCTCATTCTCACACTCCAGTCCAAACAAACCAACTACATGTGAACGTATTATGTCTTTAACACTTGAAGTTAAAGAATGATAATGTTGATAAAATATTTCTGTTGATATTTAATTTGACTCTTTCACATTTTCCCCCTTATTTATTTCAAGATTTATTTTAGTTATACAATTTTAGAATTTAATATAAAGAAAAAAATGCCTACAATGGCACCTACTTGCAATTTTAACTCAGCCTGGGAGCAATTTGGAAGTCGTCTTCAACATCTTCACAAACTAAACAGATATTTCCACCATTTTGCTTATAAATAGAAGGTAATCTTGAACTGTTTGTTGTGTCTCAGTAGACATTGAACTCTTTCAAGAAGAACATCTTACTCATCTTTGAGAGAACAAAAGAGTTATATATCTACTACTACACTTGACCATGAATAATCGACTTGAAAGCCAA


Gene Sequence:
>Vu_05933(-)
ATGATGCTCTTCTCTCACCAATATCCTGGTGCATTCACTGAAGTAACTCCTCCTCAACAAGGTCTCTATTCATATTACAACGCTCAACATTTTTCTACTATATATTGATTCTGTATCTTCAATATGATATATTCGACACTCTTTTAATTTAAATTAATCTTTACACGTCTTTGCACAGGCAAAGAAGCCAAGCCAAGACGCAAGAGAAATAAAAATGGTGCTGCGGCCACCCCCAAGAAGAGAAAGCTCACTGCCGACCAAGTTAGTCTTCTCGAGAAAAATTTCTGCAGTGAACAGAAACTTGAATCTGAAAGGAAGGACCAACTCGCATTTGAGCTTGGTATGGACCCTCGACAAGTTGCGGTATGGTTTCAAAATCGACGTTTTCGTTGGAAGACCAAAAAGTTGGAGGAAGAGTACTCCAATCTTAAAAATGTTCACGAAACCACCATGCTTCAGAAGTGCCACCTTGAGACTCGGGTACTTACACCTAATTCATTTCTTTTCTACATAGCTTTTCATTACTATAGATCATTGCTCTACACTATTCTTGTACTTGAAGCAATTTGTTGAAAACAATCAAATGAGCTTTAGTAAGACCCCCTTTTGCATCTTATTGCCTTGGTAGCAGAAAACGGTCTCATCTGTGTTACCTTCTTTCTCACAACAATAACTTCAATTTTTGGGCAAGTTTAGGAATGTTTCTGCTATATTTATACTTATATCTACATATCATTGTCTTTTGTTACTTTAGTTCTTAAAGTCTGCTTTATGTATTTTATTTTAAATAGTTCCCCCGCCCCACTACTAGTTTAATCACGTACTTACAACCAGTACTTTGATTTAAATCTCAAGAACAAAATTTTCGAAGTTGTTGGCCACTTCATAAGTTAAAGAGTTCAAATATTTGGATAGAAAACATACTTATAACTAGTAGTATATATAATCATCTTCGTTTATCACATATTTTTAAGTAAAGACATTTTAAAATTACCCAGAAAATAAAATAAAAATCTTCTCTAAAACTATTTAGAACAACATTATTATAAGGAAATTTAGTGGAGAGTTTTTTTAGAACAAGACATTGACAAATGATTTGACATGAAACACCAAAAGGCATCCTTGGTGTACAATAAAAGCCACTGTCTTTCGGCCGTGGATGAAGTACGTACAATGTTTTGTGCACTGGCATTGGGCAATGGTTAATGCGCACTTATCAGAACCCACGTGACGTGTTCAAATACATTGCATCTTGCTGGAAAAAGCAAAAACTAACAAGACGATAGATCCTTTATTTCTAAGGTTCATATTACGACATCACAGTTCACAAAAAAAAAATAGAAATATAATGGCATTGTTCAAATATAGGTATTAAAGCTGGAGGAGCAGCTTTTGGAAGCAAAGAAGGAGATTCAGCAGTTACAAGAGCGTGATGAAAGAGCCGCAAGCAAAGATTTGCTGGAAGCTGTCAACCCACCATTTCCTGAAGAGTTTAGGGTGGAAGAATATGATTATGGTGATGTTTTCTACATTCCGGAGACTCATTACATCAATGGAATGGAGTGGATTAATCTCTACATGTGA