Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_05948 LG1 88337277 88337812 leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1
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Annotations  
category   relationship type   keyword
Biological Process   involved in   hormone-mediated signaling pathway, anther development, floral organ development, gametophyte development, microsporocyte differentiation, anther development, microsporocyte differentiation, microsporocyte differentiation, floral organ development, hormone-mediated signaling pathway, protein phosphorylation, microsporocyte differentiation, regulation of meristem growth, microsporocyte differentiation, regulation of meristem growth, hormone-mediated signaling pathway, anther development, protein phosphorylation, anther development, regulation of meristem structural organization, floral organ development, protein phosphorylation, floral organ development, hormone-mediated signaling pathway
Cellular Component   is active in   plasma membrane
Cellular Component   located in   plasma membrane
Molecular Function   enables   protein binding, protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein binding, protein binding, protein binding, protein binding, protein serine/threonine kinase activity, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, receptor serine/threonine kinase binding, protein binding
SNP Position Effect Amino acid change
C/T 88337323 stop_gained p.Trp105*
C/A 88337380 intron_variant
A/G 88337413 intron_variant
C/T 88337421 intron_variant
G/A 88337462 synonymous_variant p.Val87Val
G/A 88337485 synonymous_variant p.Leu80Leu
T/A 88337511 missense_variant p.Tyr71Phe
A/G 88337513 synonymous_variant p.Ser70Ser
G/A 88337520 missense_variant p.Pro68Leu
C/T 88337539 missense_variant p.Val62Ile
A/G 88337540 synonymous_variant p.Asn61Asn
A/T 88337549 synonymous_variant p.Leu58Leu
C/T 88337695 intron_variant
G/T 88337798 synonymous_variant p.Pro5Pro

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_05948.1
MGNIPGAWKPHRAWKHPPSSPPRRHPSEIGNLSQLVNALSGSLTPELGNLKSLMSMDLSNNVLSGEVPTSYVELKNLTLLNLNRVGVSRQLQLLLLRLGVEEGKVGGKEEGQGKMGWDWM*


CDS Sequence:
>Vu_05948.1
ATGGGAAACATCCCCGGAGCTTGGAAACCTCACCGCGCTTGGAAACATCCTCCGTCATCTCCACCTCGGCGGCATCCGTCGGAGATTGGAAACTTGTCCCAGCTTGTGAATGCGCTCTCCGGCTCGCTCACTCCTGAGCTGGGGAACCTGAAGAGTCTCATGTCGATGGATCTTTCCAACAATGTTCTCTCCGGCGAGGTTCCGACGAGTTATGTGGAGCTCAAGAATCTAACTCTGCTGAACCTTAACCGTGTAGGAGTCAGCCGTCAGCTCCAACTCCTCCTTCTTCGGTTAGGAGTGGAAGAAGGAAAAGTTGGAGGAAAGGAAGAAGGACAAGGAAAAATGGGATGGGATTGGATGTGA


Promoter Sequence:
>Vu_05948::LG1:88337812-88339812(-)
TCTTGTCTTGTATTTTTTTTAGTTTCATAATCCTTTCTTCATAGTATTTTTTAATATCTTCTATTCAATGTGGGGGTGAAAAAGGTGGTAATGACTCTATTTTTTGTGGGGGTCATGGTGGTTCTTCCATGATTATAGGGTGGAAAATATATGAGGATGGAAAGAAATTGAAAAAATAATTTTATTTTTTTTTTGGAAAAATGGAAATCGTAAAAAATATTGTAAAAGCATGAAAATTATATGAAAAAGTATATTTCGCAATTTTTACCTGTTACTTGCTTATGGTTCATATAGTGGTATTAAATTTTAGTTTAATTTGTCATGTTCTTTAATACAGTGTTGGAGTTACTCAATGAAAATATTTTTTATAAGAAAATCACAATAGGCTTGGGTTGCTTAAGGAACCGAAACTTATAGTCGGATAGGTTTAAATTATTTTTCAAAATTAAAGCTCGTTCCTTTATTTATTTAGTTTTATAATACTTTATTGTTTTGAACTTTAATGTTAGAAACGAAGTGTAATGTTAAAGTTTATGCTTCAGTTCAGAAGTCCATAAACCTTTTTTTTTTTCTTAATATGTTTTGATTTGAAAACTAAAATATAATGTCGAAAATAACACGTGTCTAAACTTTTGGTTGCGCTAATGTTAATGTTGTTGTAGCAATTAATGAGTCTTGAAAAATGATTTAGTTTTTAAGTTTTAAGAGACATTTGATATTGACGTCAATACTGTGAGTGAATGAACTATGATAGAGACCTAACTCATAAACACATCATAGACTTGTTGCAACACGCCTTAATTAGTATCTAAAAATAACATATTGCAAAGATGAGACATTTTAGCTCAGTTATCAAGCCAAGGGACAGCCCCACAATGGCCATATAGGTAGGTCAGACCCATTATTACATAAACAAGTTCCTCCTAACGCAAAATAATTAATCTAATATGAGGATTTAATATTAAACTAGTAAAGATCTAAGATTCGATCATATTTACGCATGTCATTTTCAAATAATATATTTTAATATAGATCACATATGATAAATTTAATATATGTAAATTTAATATATGTAAGTAAATGTAAATTTTATTTTATAATTCAGAATTTGTAATATGTTTCAAATCATTTTAATATCATCTTAAAAAAATTTAAGTCGAACTTAATCTTATAACATAAAATTTAACTTGTAAAAGGAGGTTTAAATTTACTTATTTGGTAACATAAACTTTCCCCTACATCTATAAACATATTTATATCTATTCCCAAAAACTCATTTCTAATAGGTGCAGGAATTTTGACAAACCTGTAAACACATATTTATATCTCTTACAAAAACTCTCAACAGAGCATTGAAAATTGTAACATCCCAAAAATATAGTATAAACCATATAAGAGGATAGTCACATATTAATAATATGACAGATCCGTCTTACAAAATATCGGAAGCACAACTATGACCGAACGGTCTTACAAAATACTACAGAATTTAAAACTGTACAGAGGCTACAATTAAACCGAACGGTTTACAAAATAAACTTATAACGAACGGTCACTAGTACAATCAAGAAAAACAACAGCGGTTATTTTCGCTGATAGACACCGATTTTTCAACCAAGGTATATTCAGACGAGGTAAAAAGTGATAGATTTTATGCCTCGGTTCAGAACCGAAGCATAAAATGGTAGGATTATGCTTCAGTTCAAAATTAACTGAAGCAATAACATTTTTTATTTTTTTAAATTTTATGCCTCTATTCCTGATGAACCGAGGTCGTTTCTCCCCCTCTCCTGTACCTCATTTCATCTCCTACCTCTCCCATGCCAACAATCAGTTCTCCGGCCCAATCCTCGCCTCCTTCTCCGCACTCTCCGGCCCAATCGGTCCCCTTCCCCTCGCCATCGTCGCGATGCCCATCCTCCGTCATCTCCACCTAGCGGCAACTTTTTCTCCGGCCAGATCCCTCCCGAGTATGGCACCTGGCAGCACCTAACGAGCTC


Gene Sequence:
>Vu_05948(-)
ATGGGAAACATCCCCGGAGCTTGGAAACCTCACCGCGCTTGGAAACATCCTCCGTCATCTCCACCTCGGCGGCATCCGTCGGAGATTGGAAACTTGTCCCAGCTTGTCTGTTTCGACGCTGGGTATTGCGGACTCTTCGACGATATTTCGGCTAACCTCGGAAGGCTTCAGAATATGGACACGCTCTTTCTTTAGGTGAATGCGCTCTCCGGCTCGCTCACTCCTGAGCTGGGGAACCTGAAGAGTCTCATGTCGATGGATCTTTCCAACAATGTTCTCTCCGGCGAGGTTCCGACGAGTTATGTGGAGCTCAAGAATCTAACTCTGCTGAACCTTAACCGTGTAGGAGTCAGCCGTCAGCTCCAACTCCTCCTTCTTCGTTTCTGAAACTGAAGTATATTAGTGAGATTATTATTAATGAGTGAAGCACGTGCTTGGTGAAGTAGCATTGTTATTTTTTAGGGTTAGGAGTGGAAGAAGGAAAAGTTGGAGGAAAGGAAGAAGGACAAGGAAAAATGGGATGGGATTGGATGTGA