Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_06032 LG1 89566533 89568385 PREDICTED: myb family transcription factor EFM-like isoform X1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   floral organ formation, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, floral organ formation, regulation of transcription, DNA-templated, specification of plant organ identity, negative regulation of gene expression, floral organ formation, floral organ formation, regulation of transcription, DNA-templated, floral organ formation, specification of plant organ identity
Cellular Component   located in   cytosol, nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   protein binding, protein binding, protein binding, protein binding, DNA binding, transcription cis-regulatory region binding, protein binding, DNA-binding transcription factor activity, protein binding, transcription cis-regulatory region binding, protein binding
SNP Position Effect Amino acid change
A/G 89566538 synonymous_variant p.Glu2Glu
C/A 89566544 missense_variant p.Ser4Arg
C/A 89566579 missense_variant p.Thr16Asn
G/A 89566627 missense_variant p.Arg32Gln
G/T 89566839 intron_variant
G/C 89566840 intron_variant
A/G 89566872 splice_region_variant&intron_variant
A/G 89566960 missense_variant p.Lys95Arg
A/G 89567072 intron_variant
A/T 89567095 intron_variant
T/G 89567166 intron_variant
C/T 89567656 synonymous_variant p.Phe233Phe
C/T 89567966 synonymous_variant p.His260His
T/A 89567970 stop_lost p.Ter262Argext*?
A/T 89568232 synonymous_variant p.Ser304Ser
C/G 89568323 missense_variant p.Gln335Glu

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_06032.1
MELSLDLSLAFVPGRTVRQILGEVAQNEGGSRRMATLEDFLLKLEDEKRKIESFKRELPLCMVLVNDEEINGGVRMQEAPVVEEYMPLLKTKSEGSETLNMGKERSNMKNWMNSVRLWNVESKPRTEEDDRCVPHNPNQPQNETNKSRGAAAALNGNNCVLKTVMSEDKRVSQAPSHGLMRPVFESNDRKAESSNEHGSSLMTTSSLEIKGQAQPQQNPRKQRRCWSPELHRRFVDALQQLGGPQVATPKQIRELMQVVGLTNDEVKSHLQKYRLHFRRPQVCSVEVANGGLCLMVKDKHGDNNKSKGNLSQSGSPQGPLFLGGSGRNSMDTEEDEQSDCHNWKGALHHQPEAELL*


CDS Sequence:
>Vu_06032.1
ATGGAACTGAGCTTGGATTTGAGCTTGGCCTTTGTCCCCGGAAGAACCGTTCGTCAGATTCTTGGCGAGGTTGCTCAGAACGAAGGTGGGTCTCGGAGAATGGCCACGCTTGAGGATTTTCTCCTAAAGTTGGAAGATGAGAAGAGAAAGATCGAGTCTTTCAAACGTGAACTTCCTCTTTGCATGGTCCTCGTGAACGATGAGGAGATAAACGGAGGTGTGAGAATGCAAGAAGCACCCGTGGTTGAAGAATATATGCCACTTTTGAAAACCAAATCTGAAGGAAGTGAGACTTTAAACATGGGTAAGGAACGCAGTAACATGAAGAATTGGATGAACTCTGTTCGGCTATGGAACGTTGAATCCAAACCGAGGACTGAAGAGGACGATCGATGTGTCCCCCACAATCCAAATCAACCACAGAATGAGACCAACAAGAGTAGAGGAGCAGCAGCAGCATTAAATGGAAACAATTGTGTCTTAAAAACAGTGATGAGTGAAGACAAGAGGGTGTCACAGGCTCCTAGCCATGGTTTGATGAGACCAGTGTTTGAATCGAATGATAGAAAAGCGGAAAGTAGTAATGAACATGGGTCGTCCTTGATGACAACAAGCTCATTAGAGATAAAGGGTCAAGCACAACCTCAGCAGAATCCGAGGAAACAAAGGCGATGCTGGTCACCAGAACTTCATAGGCGATTCGTCGATGCCCTTCAACAATTAGGGGGACCACAAGTGGCCACTCCAAAGCAGATCAGAGAACTGATGCAGGTGGTAGGCCTCACAAATGATGAAGTGAAAAGCCATTTGCAGAAGTACAGACTTCATTTTAGAAGACCTCAAGTTTGTTCGGTTGAGGTAGCTAATGGTGGGTTATGCCTTATGGTAAAGGATAAACATGGAGATAATAATAAATCAAAAGGGAACTTATCACAATCTGGCTCTCCACAAGGTCCTCTTTTCTTAGGAGGGTCTGGACGCAACAGCATGGACACAGAAGAAGATGAACAATCAGATTGCCATAATTGGAAAGGTGCTCTTCACCACCAACCAGAAGCTGAACTTCTATGA


Promoter Sequence:
>Vu_06032::LG1:89564533-89566533(+)
GGAATACTATCATATCTTACCCTTGAATGAGGGAAAGAAAATTCAAACCTTTGGGTTTAAGCAGATATCACTTAGTGAGGTGGGATAACATGATTTTTGCCATCATCCAATCATCTCAATGTTGTTATATAAGATTAATGAACTTTCAACATTTGTATAGATTTTCATAAGTTTAAGTGTCGATCATTAGCAGCAGGACTCCATCGCTATCAAATGCTAAAGGTTACATTTCTTTCATTGCTTAGCAAACTTAGAATCATCGGATGTTACATTCCAAGTTTGAATTTATTTTACCTCTCTTGTATTTACCCAATGTTACTAACTATTACATGATTTCTTAAATTATTTATGTATTGATGTATCTCATTTTGTTGAAAATCTAAATGAATTTAAGTCTCATATTAAATAAAAATAAAAAATAAAGTATCATATGACATATAAATTTATTATTTGAAAGTTTAAGTTAGGATAATATCCATTCTTTATGTGTAGATTACATTCATATCTTATTGACATGGCGTATTTCTAATCATTTTTCTTTGAAAAATCATCATTAGTGGTATGAAAATAAAATGTTATGAATGATTTAAATAAGTGTAAAAGAAAGTGAAAATTCTAATTATTTAAATTAATCAAAATCCTTGACTTGGTCTAACAAAATACATTTGCTTAGAAAAGGTCGTAATGTCAAATTAGACAGAGTAGACTACAAAATGTTTTATAGAAAACTTTTTCAAAATTGTCCTTCTTTTAATATGTGGATTTAATCGAAATTCAATTTGAGATTATAATATGATACTCAAAAGTGTGCACTTAACCTATAATACAATGTTGCAATGCAATCTTATTGAAAATATGAAATAAATTTGATAAACGAAAATTATGAGAATACCCGTAGTTGAAATCATAGGCAGATCTATCTACTTCAGTACTTCTTTCCGCACTCATCATTATTTTTTACCTACGACGATGGTTATGGTTCACCTTGCATTTTCTACAAGGATGGTTTCACCAAATATGTCGTTGAGGGCCTATCTTCCTTCTACAATTTTGCACAAGTAATAAATTCAATTAAAATTCACTATTTACATAAATATTGTTACACAGTCATTCTCATTAAATTTCATAATAATATTTTATAGGTATTATTATAAGATGAAGACAAAGTCATAATTAAAAATCCCTTGCTAACATTTCTCATCAAATACAAGACCGGGTGAAAGAAAAAAACCGTGGTCGGTTCTCGAAGTATTCCAAAAACATATAGTTAAAAGAACAGCGGGAAGGAAAATAACATGCCAAACACGAGAGAGAAAGTTGCGTGATGCGTTTTTCAAACACTTTCTCACGAAATTCAACTTGACGGTGATAATACAAAGTGTTATTATACTACTATATAAACAATACATGAAATTAGAGCTTTGAATTAAAGACACATAAATTATAAAAAATGTAAAAAGAAATATTTAAAAACTTTGGCTCGACTATTATTCAACGGCATTCTACATGTGGGTCAAACGTTTGCTCAACTTATACATATAGGTTACAAGCCTATAGTAAGTAAAGAATCTCCCAGAAACCACACCCATTCAAAACTATTTAATTTCATCCAACCAATTGATGTAACACAACCATATTGCATAAGCCGTGATATTGTGGAATCAAAAGATTCTCATCTCAACCACACCATTTGTTTTTCTTGTTATTCTTTTCCAAAAAGAAAAGAAAAAAATTATTGTTCGCAAATTATTAACAACCGTTGGGCTTTGTTTTGAGTCACATTACACATTTACACTAATGGGGTTACGCGACGACACGAATGCGATCACTGAATCTTTCTGTCCGGAATCACGATAATATAAATAAATGAATCTCTATCCCCTTCTCCCTCTCCCTTTGTAATAACAATGGTCTGGCACCTGAAGCTTCAGCACGCCACGCCACGCTGAAACTGTGAAATTAGTTAACATTTTTCTTTGTTTTCTACCTACTCCCCAAGA


Gene Sequence:
>Vu_06032(+)
ATGGAACTGAGCTTGGATTTGAGCTTGGCCTTTGTCCCCGGAAGAACCGTTCGTCAGATTCTTGGCGAGGTTGCTCAGAACGAAGGTGGGTCTCGGAGAATGGCCACGCTTGAGGATTTTCTCCTAAAGTTGGAAGATGAGAAGAGAAAGATCGAGTCTTTCAAACGTGAACTTCCTCTTTGCATGGTCCTCGTGAACGATGGTGGGTTAAGAACTTGTCCTTTTATATAGAATTTTCCAAGTTAACATTTTTTATGTGATTATTGCGCATGTTTTGGTGTGTTGATGATTAATATATTCTTTGGGGGTCTGCAATCTGCGTGAAGCTGTTACTAAATTAAAAGAGGAGATAAACGGAGGTGTGAGAATGCAAGAAGCACCCGTGGTTGAAGAATATATGCCACTTTTGAAAACCAAATCTGAAGGAAGTGAGACTTTAAACATGGGTAAGGAACGCAGTAACATGAAGAATTGGATGAACTCTGTTCGGCTATGGAACGTTGAATCCAAACCGGTAAATTTTTATTTCAGAAATCATTATATATTTCACATGTTCATGGTCACAATCAATTACCGCATGATATACGATTAAGATTTTTTGTTTATAAAGGCATTCATAATATTCAATTACGTTTTGAAGATTGAGATGCTGTGTTATCCTATCCTATGCTATGATAGCTTTTAGACCGTAGTTATCCTATACTATAGTTTTTCAGGTAAAAGGATTGTATTTTATAGCAGTTTCTACAGAATTAAGAACAAAAGTTTAATTATTTTTATTTGGTAACGTACAGAGGACTGAAGAGGACGATCGATGTGTCCCCCACAATCCAAATCAACCACAGAATGAGACCAACAAGAGTAGAGGAGCAGCAGCAGCATTAAATGGAAACAATTGTGTCTTAAAAACAGTGATGAGTGAAGACAAGAGGGTGTCACAGGCTCCTAGCCATGGTTTGATGAGACCAGTGTTTGAATCGAATGATAGAAAAGCGGAAAGTAGTAATGAACATGGGTCGTCCTTGATGACAACAAGCTCATTAGAGATAAAGGGTCAAGCACAACCTCAGCAGAATCCGAGGAAACAAAGGCGATGCTGGTCACCAGAACTTCATAGGCGATTCGTCGATGCCCTTCAACAATTAGGGGGACCACAAGGTAGATTAAAGTTAGCATTTAAGCATAATTAAGAGGGAGAAGGTTTGTTAGAGTGAATGATTCCTTCTTTTGCAAATTAGGGTGGGCTCACAAATTCTTGACCTTATCTGCATAATCAATGGTGGATGATTTTTTTTTTCTTTTTTATTTCTCTATTGAATTCAGAATCTTCCATCAGGAATTGAGAAAAGTTAGTCTTATCTCTATGATTGGTTTGCTTACTGTAGTGGCCACTCCAAAGCAGATCAGAGAACTGATGCAGGTGGTAGGCCTCACAAATGATGAAGTGAAAAGCCATTTGCAGGTGAGTGTTTTATTTAGATTATGTCTGATAAACTTTTGTCAGTGTCAGTGTATGTTAATGAATCAAATTGTTTTCTCTAATTACTAACATGTTTTTGAGCCTAAGTTAATTTTGTGAATTGTGGTTGAATCAGAAGTACAGACTTCATTTTAGAAGACCTCAAGTTTGTTCGGTTGAGGTAGCTAATGGTGGGTTATGCCTTATGGTAAAGGATAAACATGGAGATAATAATAAATCAAAAGGGAACTTATCACAATCTGGCTCTCCACAAGGTCCTCTTTTCTTAGGAGGGTCTGGACGCAACAGCATGGACACAGAAGAAGATGAACAATCAGATTGCCATAATTGGAAAGGTGCTCTTCACCACCAACCAGAAGCTGAACTTCTATGA