Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_06033	LG1	89574334	89574861	PREDICTED: LOB domain-containing protein 25-like	Map

Annotations

category		relationship type		keyword
Biological Process		involved in		petal development, proximal/distal pattern formation, petal development, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, petal development, petal development, regulation of transcription, DNA-templated, leaf morphogenesis, leaf morphogenesis, regulation of transcription, DNA-templated
Cellular Component		located in		nucleus

SNP	Position	Effect	Amino acid change
C/T	89574601	synonymous_variant	p.Glu87Glu

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_06033.1

MTPCGACKYQRRRCGSDCVMVSYFPAESIQRFAYVHHVFGGGNVSNILRSTSPDLRKWVARALAYQAEARVRDPVHGCVGLIWEQEETLGILKEKLEKAKRELAQYVGPHVMQKMIGQCSSDPHAKTVDLKAPLSAPVDFDLSSWDPFPAWESSSSRRLPPSQADAKGKTIAPPS*

CDS Sequence:
>Vu_06033.1

ATGACCCCATGCGGCGCATGCAAGTACCAACGGCGGAGGTGCGGATCGGATTGCGTGATGGTGTCGTATTTCCCGGCTGAGAGCATTCAGCGGTTCGCGTACGTGCACCATGTGTTCGGCGGGGGAAACGTCAGTAACATTTTGAGGTCGACGTCGCCGGATTTGAGGAAGTGGGTGGCGAGGGCGCTGGCGTACCAAGCGGAGGCGCGTGTGAGAGACCCGGTGCACGGGTGCGTGGGGTTGATATGGGAGCAGGAGGAGACTCTGGGAATCCTGAAAGAGAAGCTGGAGAAAGCGAAAAGGGAACTGGCCCAATACGTGGGCCCCCATGTTATGCAAAAGATGATTGGGCAGTGTTCCTCCGATCCGCATGCGAAGACGGTGGACCTTAAGGCTCCTCTCTCTGCCCCCGTTGATTTTGATCTTTCTTCATGGGATCCTTTTCCGGCTTGGGAATCTTCTTCCTCACGCCGCCTGCCACCATCTCAAGCTGACGCTAAGGGTAAGACCATTGCTCCTCCTTCTTGA

Promoter Sequence:
>Vu_06033::LG1:89574861-89576861(-)

TTGAACCGAGGCCGTAACCCTTAAAAACAATTAATTTAAGGGTCTATGACCTCGGTTGGAGTCCAGAACCAAGGCAATATACCATTTTTTGCCTCGGTTCTTACCATAACTGTTGTCTAAAGTATGATTTTTTTTAAAAAATAATTGCTTGGTTATGCAAACATTCCATAACAACCTGTAATCTGAAGTTTAAAAAATATTTGCATTGCAAAACTTAAAAAGACTCTAACTTTCACTCTGGTTAACCTTTTTTTGATACCGTGGTAGCGAGCGTAGCCAGCTAATCCTTCCAAATCTCCCAGAAAATGCTGTTTTCTATTTTTATGAAAAAAAATTATATTTTTTCAAACTTTTCAAAACGAAAACATCAAAAACTTAAAATGAAACTAACATTAAAGGTTGAAGGCGACTTCTATGCTGAAACAAAACAAAATAAACATCCAAAGAGCACTTGTGCACAAAATTAATCGGTAAAAATGAAAGACAATGGTAGAGAAACAATTAATCAACGAAAAACGAAAGAAAAAAAAATGAAAGAAATGGAAGATGATGGTCTGGAAGGCATTGAGAGAGAGTAGTAGCACAAAGGAGATTACAAATGTGCAAGAGACGTCTTTGCGAAATTTAACCCTAAAAACATGTTATTACCTCGATTGTAATATTAACCGAGACGATAAGGCTCTACGGCCTTGGTTCTTTTAGGAATCACTGCCTAAAGCCTCTCAAAAAAACTAAAAAAAAATATATTTCAGTTATTTTATGTCTTTATGACCTCGATTCTCTAAACAACCAAGGTCATAAACCCTTTAAACATCAGTTTTCTATGAACCGAGACATATATGTTTGCGATAATTGTAAAAATGTCACCGCGTCATTTTATGTCTCGGTTGTAACAGAATCGATGTCAAATCTATGAGGTAAAATCCATATTTTTTTAATAGTGATATTTGAAAAGAATAAAAAAGTGGATGTATAACAATTACAATGAACTAATTGATAATATTTAAATTTTATAATTTTCCAATTATTTTTATTTCAATATTTAGTATTCTTTTCAAAAATATAAATGGAATAGTACATTAAGATTACATAATATCAAAATGTCTAATTTATTCAAAACTTGATATATAAGATAACAATAAATATTACATAAGCTAAATTTATTTTTAATAACCAGTTATCAAATAAAGGAAGTATTGAAAATTTATTTAAGACTAATCAATTCTTTTTTCCTTTCTTTAAATATTTAATGACAAATACTTGCATGGATATTAAATAAATAATTTATTAATAGGTTCCAAATTAAAGTCAGGTACACCATATGGAGAAATGTTGTGTGGAATTTGATTTTAATATCTAAATTATGTAAGCATTCATTCGTTGTAGCTTATTAAATTACCTTTGAGACGTTGAATTTATAATATTTATTTTCAAATGTATAAGATAAATTATAATTAATGGACTGTTTAAAAACTCAACACTTAAAATGAATGAAAATTATTAAATTCAATAATGCAATAAATATTTATTTATACCTTTTGAATATTAATTGCTTATTTAATTCCATATTCAATATTTGTATATTCTAATAATGACAAAACTGACAGTCTATATACATCACGTAAGAATCCTCTTCCTCTTGCTCTAGCCCAACCTCCATTTCACACTACAGTAAGTTCTCTCTCATACAGCGTGTCTTTATTTTACATTTTTCTTTTTTCTTCAACCCTTTACTGTTTATCCGATTATAAAAAATATATACAAAATGATGTTAAAGTACATACAATCTGTAGCTGTTATCGATTATTTTATGACATTTGCTACCTTCAGTTCTTTTTAGAAGAAGAATAACTTCAAAACTTATAATATAAAGTTTTTAAAATACATTTAATTTATAATTTACTTTTTCTAAAATAAATATATGAATGTAAATTAATAATTTTATATGAGATTTGTTTATTTCTTCTTAGAGCAGCGCTGTTGTAGAAGAAGAACAAAGC

Gene Sequence:

>Vu_06033(-)