Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_06068 LG1 90070579 90071358 PREDICTED: transcription factor HEC2
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, carpel formation, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, regulation of auxin polar transport, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, stigma development, carpel formation, carpel formation, response to temperature stimulus, regulation of transcription, DNA-templated, stigma development, stigma development, gynoecium development, transmitting tissue development, regulation of gene expression, transmitting tissue development, positive regulation of transcription, DNA-templated, transmitting tissue development, regulation of transcription, DNA-templated, carpel formation, regulation of transcription, DNA-templated, gynoecium development, stigma development, positive regulation of transcription, DNA-templated, gynoecium development, carpel formation, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus, nucleus, nucleus
Molecular Function   enables   sequence-specific DNA binding, protein binding, DNA-binding transcription factor activity, protein dimerization activity, protein binding, DNA-binding transcription factor activity, protein binding, DNA-binding transcription factor activity
SNP Position Effect Amino acid change
G/A 90070753 synonymous_variant p.Val202Val
C/A 90070887 missense_variant p.Ala158Ser
C/G 90071064 missense_variant p.Ala99Pro
G/A 90071107 synonymous_variant p.Asp84Asp
C/A 90071109 missense_variant p.Asp84Tyr
T/A 90071247 missense_variant p.Thr38Ser
A/G 90071248 synonymous_variant p.Thr37Thr

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_06068.1
MDVDIVKASACDTTNMDVMAMMMQMEKFSEFCDPFYTTTPPYTEPDMLSSGSSSTSVSTIFNNGTPPTLVDPPPPNVLNFSNNDNGLIQQPMTPSLHPAQPSTTSFPHPSEKKNSMAAMREMIFRIAVMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGASRQHNHNTVAAVGFPIGMSNSNNVNYSSLLMKGCQPCQVFGSTSKQLLS*


CDS Sequence:
>Vu_06068.1
ATGGATGTGGACATAGTGAAGGCTTCCGCGTGTGACACCACCAACATGGACGTGATGGCAATGATGATGCAAATGGAAAAGTTCTCCGAATTCTGCGACCCTTTTTATACTACCACCCCACCTTACACAGAACCCGACATGTTATCCAGTGGAAGCTCCTCTACAAGTGTTTCCACCATTTTCAATAACGGAACTCCACCGACTCTCGTTGATCCACCACCGCCAAATGTTCTCAATTTTTCCAACAATGACAACGGCCTTATCCAGCAACCTATGACACCCTCTCTCCACCCCGCACAGCCTAGCACCACTTCCTTTCCCCACCCTTCTGAGAAGAAAAACTCTATGGCGGCGATGAGGGAAATGATATTCAGAATAGCGGTGATGCAACCTATTCACATAGACCCTGAATCCATAAAGCCACCGAAGCGAAGGAACGTGAAGATTTCAAAGGATCCGCAGAGCGTGGCGGCGAGGCACAGAAGGGAAAGGATAAGCGAGAAGATAAGGATTCTGCAGAGATTAGTCCCAGGTGGCACCAAGATGGACACGGCTTCGATGCTGGACGAGGCCATTCACTACGTCAAGTTCTTAAAGAAACAGGTCCAGACACTGGAACAGGCTGGGGCAAGTAGACAACACAATCACAATACTGTTGCTGCTGTCGGTTTTCCAATAGGGATGTCTAACTCCAACAACGTTAACTATTCTTCTTTGTTAATGAAGGGTTGCCAACCTTGTCAAGTTTTCGGTTCTACTTCCAAACAATTGCTCAGCTAA


Promoter Sequence:
>Vu_06068::LG1:90071358-90073358(-)
CTATGCTAAAAGAACACAAAATTTATTGACTTGCACACGTTGATGCAAGCCAAAAAGCACCAAAATTGCTAAAGCTCTTTTGCATATTTAGAAATTCTGAAAAAGGTCTGCCAAAACAGTTAGCAGTACAGCCAAGGTTAAGCAGCATGACTTTCTTTCTTTACACTTTCTTTAAAGATATTAAATGAAACACTTGTTCGTGCTTTATTTGAATGGAAATTAAATTTAGATTTAGAAGATTATTATAAACCGAAAATATGTTAAATTTGTTATTTTGATATGACGACGAAATGAGAAAGGATTGATGAAAGAGCAAATGGTAGTGATTTAAAAGATGGATGCAGAGGTGCAGTAAGTGGTGGGTGGAGTGCAGAGTAGAAAGAAGGAGGGTCCGCAATTACGCATCACCGCTAGCTCCCAATCTACCTCGAAAAGCGTTCTTACACACCAGTGACTATTTGAGTACTTATTTCGTCAGGATCTAACTTATTTATTACCTTTCACATTGCAAACTTTTAATTCATTTCTCCAATTTCCCATCACCTTATAACTCCTTATTACCCTACCCTTTCATGCCTGTGACTCAACACACATTTTTAAAACATCACTCAAACAATATTATCAAACAGAAAAAATAATCAATAAAGTAATATTAGACTAAAGCTGATGATGATCTATAGAATCCAACCAGACAGATTTGTTATTGTTTTACAGACTATTTTCCATATTGTCGGCGAGAGAAGGTTTTCCCCGGATTGTTGTCTATAAAATTATTTTTATAAGTTATTTAAAATTGGTGTTTAAACTAAAACAATGAGTTGAGTCAGAGGTTTAACATGAAAGAAAGCGGAAGGTTGATGATGTGTGTTTATTGGTTAAGTGGTAGAGGGTTTTGTCCTTTGTTTTATTTTTTGGCATTTTGGCAAGTATATACGCAGCGGAGGCCCACCGTACCTTATCTTGATCTATCTTTGTGTTTGCGGCCCGTCCCGACGGTGGCGGAGGTAAGGTTGAAGGTTGCAGTGAATTTACTAATCTCCAGTTTTGTTCTGACATATGTCATGTGACTGTGGGGGCTACATTGGCTCCTTTATCAAACCAAACTAGTAAAATTTCAAACCAACTTACCAAAGCAAACCCCTTTCAGTCAAAAGCATCGATACATTACAATTCTGATTGATTCATGCACCACCATTTCAACTCATCCTTCTGCCCCACTTCCACCGCTATGTGGTCCCTCTTCATTCTCAGCCCTTCATCTTTAATGCCCCCACCCTTTGACCTCTCCTCTTTCTACCCCCATCAACGGTGCAAGACCAAACTTCTCTAGACCCAACCCCACACACCTCGTGCCCCCTTTCCATGGCTCATCATAACTATTAATAATACTGTAAATCCAATCACCATAAATGAAAGACAGGTACACATACATATACTCTCACAACTCTTTTTTATCTTTAATATTTTTCAATTTCTGAGTAACAACTGTGTACTTACAGACACCATCTTCTCTTATGATTTCTATGCTAGTATCAAGGTTTTTTTTTAAGTCTCCTTAGCTATAATTATCACTACATCTTAACCAAATTTCCATATTTACAACTACCTCAAATGTTTAGAGTCTTAACTCATTCCCCCCCCACAGTACAATAATTTTACTTTTGTAAAAACAAGTATCATAAATGAGAGAGGTTCATAGATTTTCCTCAAGTTTCCAAAGATAAAATATCAGTCACAAGTTGCTATAAAAAGGGCTTCCACTTACAGTGACCCTGCTGGATATTGTTGTTGTTGGTCGGTTCAGAGATAAATAACAATCTTTCTTTCTATCCTCTGCACTTTCTGCACTCTCCTTCTACTATTTTATTCTCTCTCACCCCCTTAACCCTTCTGTCTTCTCTCTCTTTTTCTCTCTGATACAAACCCTACATCCAGTGCCCCTTTGGCGAGCCCCCATACTCTGCATCTCTCTTTTCTCACCTTCCCCATTCTCATCTTTC


Gene Sequence:
>Vu_06068(-)
ATGGATGTGGACATAGTGAAGGCTTCCGCGTGTGACACCACCAACATGGACGTGATGGCAATGATGATGCAAATGGAAAAGTTCTCCGAATTCTGCGACCCTTTTTATACTACCACCCCACCTTACACAGAACCCGACATGTTATCCAGTGGAAGCTCCTCTACAAGTGTTTCCACCATTTTCAATAACGGAACTCCACCGACTCTCGTTGATCCACCACCGCCAAATGTTCTCAATTTTTCCAACAATGACAACGGCCTTATCCAGCAACCTATGACACCCTCTCTCCACCCCGCACAGCCTAGCACCACTTCCTTTCCCCACCCTTCTGAGAAGAAAAACTCTATGGCGGCGATGAGGGAAATGATATTCAGAATAGCGGTGATGCAACCTATTCACATAGACCCTGAATCCATAAAGCCACCGAAGCGAAGGAACGTGAAGATTTCAAAGGATCCGCAGAGCGTGGCGGCGAGGCACAGAAGGGAAAGGATAAGCGAGAAGATAAGGATTCTGCAGAGATTAGTCCCAGGTGGCACCAAGATGGACACGGCTTCGATGCTGGACGAGGCCATTCACTACGTCAAGTTCTTAAAGAAACAGGTCCAGACACTGGAACAGGCTGGGGCAAGTAGACAACACAATCACAATACTGTTGCTGCTGTCGGTTTTCCAATAGGGATGTCTAACTCCAACAACGTTAACTATTCTTCTTTGTTAATGAAGGGTTGCCAACCTTGTCAAGTTTTCGGTTCTACTTCCAAACAATTGCTCAGCTAA