Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_06089	LG1	90422239	90422679	hypothetical protein	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	response to cold, regulation of transcription, DNA-templated, response to cold, regulation of transcription, DNA-templated, defense response to bacterium, response to bacterium, regulation of cell death, regulation of transcription, DNA-templated, defense response to bacterium, response to bacterium, regulation of transcription, DNA-templated, defense response to bacterium, regulation of cell death
Cellular Component	located in	nucleus
Molecular Function	enables	transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity
Pathway	B 09182 Protein families: genetic information processing	C 03000 Transcription factors [BR:ko03000]

SNP	Position	Effect	Amino acid change
T/C	90422650	synonymous_variant	p.Arg10Arg

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_06089.1

MEQGEGGSTRRRGKEGEATRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPDLLAVEGPAAAASDMSAASIRKKATEVGARVDALHRQQPHVPVAGEFADRVDLNKTPEPENSDCDWDGD*

CDS Sequence:
>Vu_06089.1

ATGGAACAAGGAGAAGGAGGAAGCACCAGAAGGAGAGGGAAAGAGGGTGAAGCCACGCGCTACAAAGGAATCAGGATGAGGAAGTGGGGCAAGTGGGTCGCTGAGATTCGAGAACCCAACAAGCGTTCACGGATTTGGCTCGGCTCCTATTCCACGCCCGTCGCGGCGGCGCGTGCTTATGACACCGCTGTCTTCTATCTTCGGGGGCCCTCCGCCCGCCTCAACTTCCCCGACCTTCTCGCCGTTGAGGGCCCTGCAGCCGCTGCCTCTGACATGTCTGCTGCCTCCATCAGGAAGAAGGCCACCGAGGTCGGCGCCAGAGTTGACGCGCTTCACCGCCAGCAACCGCATGTTCCCGTCGCAGGAGAATTTGCCGACCGGGTCGACCTCAATAAGACACCCGAACCTGAAAATTCGGATTGTGACTGGGATGGCGATTAG

Promoter Sequence:
>Vu_06089::LG1:90422679-90424679(-)

AAATAATATTTTTAAAATCAGAAAAGGTATTTAGTTTCCGTTCTATTTATAATTAAAGTCAAATTCCCTTTATATTTGAGTTATATGTATAATTGAAGCCTAATGTGTTTTTTTTAAATATATCTTTTTATAAAATGGTATTTGGCTTCAGTTATAACTTAAATCGAAGTCTAATAAAGATTCAATTTTGATATAATCAAAACCTAGTGTAAACATGTTTTTTTATTTTTTGTTTTTTTTTGTTTCGTCCTATATATTATAACTGCACAAAAAACCCAACACAGAAAACACACAAAATGAAACACCACTTTATATTCATCACAATTATAAATAATTGACGAAGAAAAGGAATCAAACAATTATAAATATATGGACCAAAATATTAAATGATAACCATCCAAGCTTTTTAGTTTTAGTAATTGATTTCCCTGATAACATGTTATGCCATTCAATTAAACTATGAAAAAGAAAGTGTTATAGGATACACTTATATAACAAAGAAAGTTCATAACATTAAGGTTTTTACCAATCTATTACTTGTTTCAGATGATTAGGAGAAAACTTGTCTAAGGAACAAAACCACACAACGTTGTGGTCCTTCATAAAAACCACAAGTAGCTGTTAATGACGCCTAAGTTAAAAATAGTTTTTATTATTATATCTTAAAATGACAAATTACACATTAGTATAAGGGATAAAATATATTTGCTTACTTTATGCAAAATAGTTGGTGTCGTGTGCTTGAATGTCATTAAATTTATTGTCTTCAATAATGAACTAATATAATTTTAATAGAAATGATTAAATTATATCAATTTTTGAAAAATTAAAACCTAGTTAGAATAAAAAATTGAAAGACCAATTTAAAATATTTTAACGAAAGAATAAAAAAACATATTTAAACTTAAAAAGAATTAAAACCAATATAAAATATAAATATACTATTTATATGTAAGTTAATTTTCTAATCTATACCAGTCAACTTATCAAGAAAATTATACTTTTAATCATATTTTTTAACTTAAGGTTAAATATGTTTTTATTCCTTAAATTTTAGTGAAAACTGAAATTAGTCTTTCTTTAAAATTTTGTAGCAATTCAGTCTCTCATTTTTTAAACTATGTAAATTTTGTCATTTTAACCAAATTTTGTGAAGTTTATGAGATTTTAAACACATTTATCAACTAATATTGAAGAAAAACGTGTCAAATAATATAAACATTCAAATGTTATCATGAAATACATTTGAAACATCAAATAAGCTTAATAAAATTTAGTTAAAAGAACAAATCCACACATTTCTAATTGAAAGACTAAATTGAATTAAAGTTTGGAGATACTAATTTTAGTTTTCGAATGTCAAGGGACTAAAACCCTTTAACTTATTATCAAATTCAAGTATGATTTTATAATAAATATAATTACAAATAAAAAATATATAAATATTGTTTTTTCCATATATTTACTTTTAAATTATAACAAAGTTAATTGTTTTGTCCTGATGCATGTTTTCTTCAATTTACACATCAAAGACTTATGTTGCTTATATATTATAATTTATAACTATGGTAATGTAATTATAAAATAATAATACTTTTTACAAGTTTTTAAACTTAATATTTACATATAATTAAAAGAAAAATAAGGATGGGAACAGAGAGAGCATGTGTTGGGGTAGGTTGGTTGTTACTTTTGTCGGTGAATATTATTTTTGTTTAGAGTGTGGTGAATTTTGAAATAAAAGGAATAGTAATGAAAAGGGTGGTGGTATAAAACAGAAGGTAACAGGGTTTGGACGTGGATGGTTCAAGCAGGCGACAACCTCGGCTCAGTGTCTCTGTACTGCAAAACCCCAATACCCTTTCTCGCACAATTTCATTTATTTATTTGCTTATCCTTTTTATGAAGATTCACCCTCTGCCCTTTTCATTTCCATAAGAGAATTTCACACACACAGAAACAGAGAGAAAAACTGCTCCTTCCTTTTTGCAGAGGTAGCC

Gene Sequence:

>Vu_06089(-)