Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_06110 LG1 90790172 90792595 PREDICTED: LOW QUALITY PROTEIN: probable receptor-like protein kinase At5g24010
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   developmental growth, protein phosphorylation, protein autophosphorylation, vegetative to reproductive phase transition of meristem, protein phosphorylation, defense response to other organism, defense response to other organism, protein autophosphorylation, vegetative to reproductive phase transition of meristem, protein autophosphorylation, defense response to other organism, vegetative to reproductive phase transition of meristem, flower development, protein phosphorylation, vegetative to reproductive phase transition of meristem
Cellular Component   is active in   plasma membrane
Cellular Component   located in   plasma membrane, plasma membrane, extracellular region, plasmodesma
Molecular Function   enables   protein kinase activity, transmembrane receptor protein tyrosine kinase activity, transmembrane receptor protein tyrosine kinase activity, transmembrane receptor protein tyrosine kinase activity, transmembrane receptor protein tyrosine kinase activity, protein kinase activity, protein kinase activity
SNP Position Effect Amino acid change
A/C 90790175 synonymous_variant p.Ala807Ala
A/T 90790190 synonymous_variant p.Ser802Ser
A/G 90790195 missense_variant p.Phe801Leu
G/T 90790263 missense_variant p.Pro778Gln
A/C 90790365 missense_variant p.Ile744Ser
C/T 90790393 missense_variant p.Val735Ile
A/C 90790400 missense_variant p.Ile732Met
A/T 90790401 missense_variant p.Ile732Asn
G/A 90790415 synonymous_variant p.Ile727Ile
T/C 90790422 missense_variant p.Asp725Gly
C/T 90790425 missense_variant p.Arg724Gln
A/T 90790453 missense_variant p.Leu715Met
A/T 90790499 synonymous_variant p.Ile699Ile
G/T 90790506 missense_variant p.Ala697Glu
C/T 90790552 missense_variant p.Val682Ile
G/C 90790576 missense_variant p.Gln674Glu
G/A 90790585 missense_variant p.Leu671Phe
T/C 90790604 synonymous_variant p.Gly664Gly
G/A 90790636 missense_variant p.His654Tyr
G/A 90790650 missense_variant p.Pro649Leu
G/C 90790651 missense_variant p.Pro649Ala
T/C 90790677 missense_variant p.Asp640Gly
T/C 90790685 synonymous_variant p.Lys637Lys
C/T 90790700 synonymous_variant p.Glu632Glu
T/A 90790799 synonymous_variant p.Ile599Ile
A/G 90791204 synonymous_variant p.His464His
A/G 90791222 synonymous_variant p.Asn458Asn
A/T 90791248 missense_variant p.Ser450Thr
T/A 90791255 synonymous_variant p.Ala447Ala
G/A 90791256 missense_variant p.Ala447Val
C/A 90791267 missense_variant p.Lys443Asn
C/A 90791280 missense_variant p.Cys439Phe
C/A 90791285 missense_variant p.Trp437Cys
A/G 90791301 missense_variant p.Leu432Pro
A/C 90791306 synonymous_variant p.Val430Val
A/G 90791307 missense_variant p.Val430Ala
T/C 90791311 missense_variant p.Ile429Val
A/G 90791313 missense_variant p.Phe428Ser
T/C 90791339 synonymous_variant p.Ser419Ser
T/A 90791360 synonymous_variant p.Arg412Arg
A/T 90791381 missense_variant p.Asp405Glu
T/G 90791384 missense_variant p.Glu404Asp
C/G 90791390 missense_variant p.Glu402Asp
A/G 90791403 missense_variant p.Phe398Ser
T/C 90791423 synonymous_variant p.Lys391Lys
C/T 90791435 synonymous_variant p.Leu387Leu
G/T 90791450 synonymous_variant p.Thr382Thr
T/C 90791452 missense_variant p.Thr382Ala
G/A 90791469 missense_variant p.Thr376Ile
T/A 90791475 missense_variant p.Asn374Ile
C/T 90791517 missense_variant p.Ser360Asn
C/T 90791524 missense_variant p.Val358Met
G/T 90791541 missense_variant p.Pro352His
A/G 90791550 missense_variant p.Leu349Ser
T/A 90791553 missense_variant p.Glu348Val
C/G 90791555 missense_variant p.Lys347Asn
G/A 90791564 synonymous_variant p.Asn344Asn
T/C 90791568 missense_variant p.Glu343Gly
A/T 90791573 missense_variant p.Ser341Arg
T/A 90791579 synonymous_variant p.Val339Val
G/C 90791584 missense_variant p.Gln338Glu
G/A 90791595 missense_variant p.Ala334Val
C/A 90791596 missense_variant p.Ala334Ser
T/C 90791612 synonymous_variant p.Glu328Glu
G/T 90791618 stop_gained p.Tyr326*
T/A 90791619 missense_variant p.Tyr326Phe
C/A 90791632 missense_variant p.Val322Phe
A/C,G 90791638 missense_variant p.Ser320Ala
G/C 90791642 synonymous_variant p.Val318Val
C/G,A 90791644 missense_variant p.Val318Phe
C/A 90791663 synonymous_variant p.Arg311Arg
G/T 90791674 missense_variant p.His308Asn
A/T 90791688 missense_variant p.Val303Asp
A/C 90791818 missense_variant p.Ser260Ala
C/A 90791837 synonymous_variant p.Val253Val
G/A 90791840 synonymous_variant p.Ile252Ile
A/T 90791843 missense_variant p.His251Gln
T/A 90791850 missense_variant p.Gln249Leu
G/C 90791857 missense_variant p.Pro247Ala
G/A 90791858 synonymous_variant p.Thr246Thr
T/A 90791860 missense_variant p.Thr246Ser
T/C 90791918 synonymous_variant p.Leu226Leu
A/G 90791923 synonymous_variant p.Leu225Leu
C/T 90791931 missense_variant p.Arg222Lys
C/T 90791969 synonymous_variant p.Glu209Glu
A/G 90792009 missense_variant p.Leu196Pro
G/T 90792010 missense_variant p.Leu196Ile
A/C 90792123 missense_variant p.Ile158Arg
T/A 90792127 stop_gained p.Lys157*
A/G 90792129 missense_variant p.Ile156Thr
G/T 90792135 missense_variant p.Pro154His
T/G 90792139 missense_variant p.Thr153Pro
C/T 90792158 synonymous_variant p.Glu146Glu
C/T 90792212 synonymous_variant p.Leu128Leu
T/C 90792240 missense_variant p.Asn119Ser
C/G 90792245 missense_variant p.Arg117Ser
T/C 90792314 missense_variant p.Ile94Met
A/T 90792315 missense_variant p.Ile94Lys
C/G 90792329 missense_variant p.Lys89Asn
T/G 90792341 missense_variant p.Glu85Asp
G/T 90792381 missense_variant p.Pro72His
A/T 90792383 synonymous_variant p.Val71Val
A/T 90792447 missense_variant p.Val50Asp
T/A 90792505 stop_gained p.Lys31*
G/A 90792530 synonymous_variant p.Ala22Ala
C/T 90792574 missense_variant p.Val8Met

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_06110.1
MATVQLCVALIFLLQLSSLQFASLGYNVPDKYFINCGSDNSVTESGKVYVGESTPQATFSSSNTERNQSSVPSPLYQTARIFRRESWYKFNIDINGTYLVRLHFFPFSSPTNLSSARFNVSVPGFWLLQNFNGRNDTNNNSALVKELFMEISTPSIKITFRPLESSFAFVNAIELFVLPLHLISSDVSRFTSIGGLSNFTEGLYSRVLETKHRLNVGGQTTRDILLRNWIPDDIYLTYPENAKNRTPYQGHIVPRVGDDSDGPNATSYTAPSEVYGTAKESKNISDNATDLGLFNMTWALPVVNNTDHFLRLHFCDYVSSQVGLTYFELSIYDAHVMQVNSDENVSKELPAPYYYDFVVSSDNSGYIKVSLTPNGTAPVPNTFLNGLEIMKVIESSNFVPPELEDPDSEYNRLPLLLGSVLGGLVLVFIVVLLGFLWRCKMKKEKSAENSDWLPILDNAGGSSHGRLTDITNHCSPIPKINLELKIPLIDLQLATKNFHATKLIGKGGFGNVYKGVLNNGMTVAVKRSQPGSGQGLPEFQTEIMVLSKIRHKHLVSLIGYCDERFEMILVYEYMEKGTLRDHLYNTNKPSLSWKVRLQICIDSARGLHYLHKGAAGGIIHRDVKSTNILLDENHVAKVADFGLSRSGPPDTQPHVTTGVKGTFGYLDPEYLRSQQLTEKSDVYSFGVVLLEVLCARAAIDPSLPTDQINLAEWGLLCKNKGILRDIIDPSIIDQVDQNSLRKFIETIEKCLKENGSDRPSMGDVLWDLEYALQLQTGPYEDSSSSVSASLQLPNVRRLPSFSILSEA*


CDS Sequence:
>Vu_06110.1
ATGGCGACTGTTCAGCTCTGTGTGGCACTCATTTTCCTTCTTCAGCTCTCATCGCTGCAGTTCGCCTCACTGGGCTACAACGTCCCAGATAAGTATTTCATAAATTGTGGGTCAGACAACAGTGTTACCGAAAGTGGAAAGGTCTACGTTGGTGAATCAACACCTCAAGCCACTTTTAGCAGCAGTAACACAGAAAGGAACCAGTCATCGGTTCCTTCTCCTCTTTACCAAACAGCAAGGATTTTTCGAAGGGAATCTTGGTATAAGTTCAACATCGATATAAATGGCACCTACCTGGTACGCCTCCATTTCTTCCCTTTCTCTTCTCCCACTAATCTTTCCTCTGCCAGGTTCAACGTTTCAGTTCCTGGCTTTTGGTTGTTGCAAAATTTTAATGGTAGAAATGATACCAATAACAACTCTGCTTTAGTAAAAGAGCTTTTCATGGAAATCAGTACCCCCAGCATAAAAATAACTTTCAGACCTCTGGAATCATCGTTTGCGTTTGTTAATGCCATAGAACTGTTCGTACTTCCCCTCCATCTGATATCCAGCGATGTGTCGCGTTTCACTTCGATTGGGGGTCTATCTAACTTCACCGAGGGTTTGTACTCTCGGGTGTTGGAGACCAAACACAGACTTAATGTTGGTGGCCAAACTACCAGAGATATCTTATTAAGAAACTGGATTCCAGATGATATATATCTCACTTATCCGGAAAACGCCAAGAATCGTACCCCTTACCAGGGTCATATCGTGCCCCGTGTAGGTGATGACTCCGATGGTCCAAACGCAACTAGTTATACTGCGCCATCTGAGGTGTACGGAACTGCTAAGGAGTCTAAGAACATCTCTGACAATGCCACAGACTTGGGACTTTTCAACATGACATGGGCTCTTCCGGTGGTCAACAACACAGATCATTTCCTTCGGCTTCACTTCTGTGACTATGTCAGTTCACAAGTTGGCCTTACATACTTCGAACTTTCCATTTATGACGCCCATGTCATGCAGGTAAATAGTGACGAAAACGTGTCTAAGGAGTTGCCTGCCCCTTATTATTATGATTTCGTGGTGAGCTCTGACAACTCTGGATATATTAAGGTCAGCCTAACACCTAATGGAACCGCTCCCGTACCAAATACCTTTTTAAACGGGCTGGAAATAATGAAAGTGATTGAATCATCAAATTTTGTCCCCCCTGAGTTGGAAGATCCCGACTCCGAGTATAATCGACTTCCTCTGTTACTGGGTTCAGTTCTCGGTGGTTTAGTCTTGGTTTTTATTGTTGTGCTACTTGGCTTTCTTTGGCGTTGTAAAATGAAGAAGGAAAAGTCCGCAGAGAATTCGGACTGGCTGCCAATTCTGGATAATGCTGGAGGGAGTTCTCATGGTAGATTGACTGATATAACCAATCACTGCTCTCCCATTCCCAAAATAAACCTAGAGCTCAAAATTCCATTGATTGATCTTCAACTGGCAACAAAGAACTTCCACGCAACTAAGCTAATTGGCAAGGGTGGTTTTGGAAACGTCTACAAGGGAGTCCTCAACAATGGCATGACGGTGGCGGTGAAAAGAAGCCAGCCAGGGTCAGGTCAAGGCCTTCCGGAATTTCAGACAGAGATCATGGTTTTGTCTAAGATTCGCCACAAGCACCTTGTTTCCTTAATTGGGTATTGTGATGAGAGGTTCGAGATGATTCTGGTCTATGAATACATGGAAAAAGGGACACTCAGGGACCATTTGTATAATACAAATAAGCCAAGCTTGTCCTGGAAGGTGAGGCTTCAAATATGCATTGATTCTGCCAGGGGTCTTCATTACCTTCACAAAGGAGCAGCTGGGGGAATCATTCACCGTGATGTTAAGTCCACAAACATATTGCTTGATGAGAACCATGTTGCTAAAGTTGCTGATTTTGGTCTTTCAAGGTCAGGTCCTCCTGATACTCAACCTCATGTCACCACTGGTGTTAAAGGCACTTTTGGATATCTTGATCCTGAGTATCTCAGGTCGCAACAGCTGACAGAAAAATCTGATGTCTACTCATTTGGGGTAGTTCTTTTGGAAGTTTTGTGTGCAAGAGCAGCGATTGACCCATCTCTTCCAACAGATCAGATAAACTTGGCGGAATGGGGATTGCTTTGCAAAAACAAGGGGATACTCCGAGATATCATCGATCCTTCCATCATTGACCAAGTTGATCAAAACTCACTCAGAAAATTTATTGAGACGATAGAAAAATGCTTGAAAGAAAATGGTTCTGATAGGCCAAGCATGGGTGATGTGTTGTGGGACCTGGAGTATGCGCTGCAGCTTCAGACAGGGCCGTATGAGGATAGTTCTAGTAGTGTTTCTGCATCACTTCAACTTCCCAATGTTCGTCGTCTTCCTTCATTCTCTATACTGAGTGAAGCTTGA


Promoter Sequence:
>Vu_06110::LG1:90792595-90794595(-)
CTTCAAATTTTATCAATTAATTTTTTTTACCCTTCAAATTACTTAAAAACTTTTTCTTTATTTCTCTTCCACTTTCACCATTCATTTAATTCAAACAACCAACTTTTCATTTTTTTTCTCTCCTTATTTTCATCAATTTTCATTTTTTCAAATCCATATAATCTAAACATCTTCACTTTCTATTTTTTCTTCTTCTTTTCGACTTTTTCAAATTCATCCCTCACTCCAAACATAGCCTTATAATTATGTACTTTTATATTTTTATTTTCATTTTTTAAATAGTTTCTTTCTAATCATAATAAATTAGGCTCAATCTACATATTTGTTTAAAGATTGTACTCATAATATCTTTGCTCTTGGTTTATAACTTTTTTCATAGATATTATTTTGAATGCTTCTAGTTGTATTAAATTTTACAATTTCAGTGAAAATATATCTTTTATAATTTTTAAAAGTTTAGACAAATTTATAAAGAATCTATTCTGATTAATTTTTATTTTTTAATTGGGCTTATTAACCGAATTATAACTTACATTAAATTTTAGAACATTTAAATAGTGCAGCAGTCTAATAGACACAAATCATTTGTTAAATTTAAGATATTTAAAGAGTTGTCTGTTCTTTTTCTTCTATTTTTATTTTTTAATCTTTGTTCTTCATTTTTTGTATTCTGCTTTCTTATGTGTTTTTTGTTCTCATTAATAAAGAACTAATCTTTGAAGATAGATTCACATAATTAAAATCAAACATATTGAATTAAGTTTTGCATCGATTATTTATTACTTTTGGTTTTTGCTCTAATTATGATTTTGCTTTTTATGATTGCAAATTGGCAAATTGCATTTATGATTTCTAAAATCAAATTAGGGATAACAAATATTTTTTTTTAATTTGTATAATCGATATAATTGATTAATTAAATTAGATATTTTTTTAAACTTGTACATGATTCTTTAAAGAAATGTAACATGAGAACTGTTTGATTGTTGCGGTTGTGGATTGATTTATTTACATTACTTAATTTTAGGTTGTGATTTCTATTTCGATTATATTTTCAGGTTGCATCTTATGTTTTCGAATCCTTAAATATTCAATTTTACTTTTTACAAAATAGTAATATACTAAATATTAAATACAATAAATATTTTAACTAATAATCAACCTAAGTTGGATTCTACTTTAAGATAAATGGACTTAAATTATATTTTATTTTAAAAAATAATATTTTTATTTCAACTACTATAATGCAAATCAATCAAGATAATAAGTAGAAGATAAGAAAAACCTTGAAAAGGATTACAAAAGATAATTTTAACAAAAAAAAAAATATAATGACACACATAATTTTTTTTCATTAATTTGATATTATTCTTTCATACCTTTTATTCTTTATTTTAAAAAAAATAAAAATAAATTTTTTATAAATATTTTATTCTTATATTATATATCAAAATGAATATAAAAGTATATTAGTGTATCTTTAGTATAGTTAGAAATCGCACTCATTAATCATTTATAAGTAATCTCCCCGTGAATTCATGGTCCATCCATAGATCACTTGTTCAAGTAAAACTCACCCTCGCATTAACATTGTTTAGTGAGATGAATTTATAAATATTATTGATAAGACTTCAAGCATGTCTTAAATGGCAAACATTCATTAAAAGATAATTGTTCTATTGTTTATTGAAGATAAAAATAACATATTATAAATCACATTATTAAATGTCTTTTCATTGTTGGAATATATGTTGAAAGGACTCATAATTCTCAAATTTCTCAGGAAAGAATTTTCTATTTTGATTTTCATGAATGATATTATTTGGGACACCGATGTGAATAAATAAACTTTCAGAATTAAAATAAAAGAAAGAAAAATCAAAGCTGCCATACATAACAGAGCTTGACTTGTGTCAAAGTCTTCCCTCCGCTGGAATTCCATGCTATTCTCATCGGATGCAACATCGTAAGCAAAACTAAACATTGATTACCATTTTTGC


Gene Sequence:
>Vu_06110(-)
ATGGCGACTGTTCAGCTCTGTGTGGCACTCATTTTCCTTCTTCAGCTCTCATCGCTGCAGTTCGCCTCACTGGGCTACAACGTCCCAGATAAGTATTTCATAAATTGTGGGTCAGACAACAGTGTTACCGAAAGTGGAAAGGTCTACGTTGGTGAATCAACACCTCAAGCCACTTTTAGCAGCAGTAACACAGAAAGGAACCAGTCATCGGTTCCTTCTCCTCTTTACCAAACAGCAAGGATTTTTCGAAGGGAATCTTGGTATAAGTTCAACATCGATATAAATGGCACCTACCTGGTACGCCTCCATTTCTTCCCTTTCTCTTCTCCCACTAATCTTTCCTCTGCCAGGTTCAACGTTTCAGTTCCTGGCTTTTGGTTGTTGCAAAATTTTAATGGTAGAAATGATACCAATAACAACTCTGCTTTAGTAAAAGAGCTTTTCATGGAAATCAGTACCCCCAGCATAAAAATAACTTTCAGACCTCTGGAATCATCGTTTGCGTTTGTTAATGCCATAGAACTGTTCGTACTTCCCCTCCATCTGATATCCAGCGATGTGTCGCGTTTCACTTCGATTGGGGGTCTATCTAACTTCACCGAGGGTTTGTACTCTCGGGTGTTGGAGACCAAACACAGACTTAATGTTGGTGGCCAAACTACCAGAGATATCTTATTAAGAAACTGGATTCCAGATGATATATATCTCACTTATCCGGAAAACGCCAAGAATCGTACCCCTTACCAGGGTCATATCGTGCCCCGTGTAGGTGATGACTCCGATGGTCCAAACGCAACTAGTTATACTGCGCCATCTGAGGTGTACGGAACTGCTAAGGAGTCTAAGAACATCTCTGACAATGCCACAGACTTGGGACTTTTCAACATGACATGGGCTCTTCCGGTGGTCAACAACACAGATCATTTCCTTCGGCTTCACTTCTGTGACTATGTCAGTTCACAAGTTGGCCTTACATACTTCGAACTTTCCATTTATGACGCCCATGTCATGCAGGTAAATAGTGACGAAAACGTGTCTAAGGAGTTGCCTGCCCCTTATTATTATGATTTCGTGGTGAGCTCTGACAACTCTGGATATATTAAGGTCAGCCTAACACCTAATGGAACCGCTCCCGTACCAAATACCTTTTTAAACGGGCTGGAAATAATGAAAGTGATTGAATCATCAAATTTTGTCCCCCCTGAGTTGGAAGATCCCGACTCCGAGTATAATCGACTTCCTCTGTTACTGGGTTCAGTTCTCGGTGGTTTAGTCTTGGTTTTTATTGTTGTGCTACTTGGCTTTCTTTGGCGTTGTAAAATGAAGAAGGAAAAGTCCGCAGAGAATTCGGACTGGCTGCCAATTCTGGATAATGCTGGAGGGAGTTCTCATGGTAGATTGACTGATATAACCAATCACTGCTCTCCCATTCCCAAAATAAACCTAGAGCTCAAAATTCCATTGATTGATCTTCAACTGGCAACAAAGAACTTCCACGCAACTAAGCTAATTGGCAAGGGTGGTTTTGGAAACGTCTACAAGGGAGTCCTCAACAATGGCATGACGGTGGCGGTGAAAAGAAGCCAGCCAGGGTCAGGTCAAGGCCTTCCGGAATTTCAGACAGAGATCATGGTTTTGTCTAAGATTCGCCACAAGCACCTTGTTTCCTTAATTGGGTATTGTGATGAGAGGTTCGAGATGATTCTGGTCTATGAATACATGGAAAAAGGGACACTCAGGGACCATTTGTATAATACAAATAAGCCAAGCTTGTCCTGGAAGGTGAGGCTTCAAATATGCATTGATTCTGCCAGGGGTCTTCATTACCTTCACAAAGGAGCAGCTGGGGGAATCATTCACCGTGATGTTAAGTCCACAAACATATTGCTTGATGAGAACCATGTTGCTAAAGTTGCTGATTTTGGTCTTTCAAGGTCAGGTCCTCCTGATACTCAACCTCATGTCACCACTGGTGTTAAAGGCACTTTTGGATATCTTGATCCTGAGTATCTCAGGTCGCAACAGCTGACAGAAAAATCTGATGTCTACTCATTTGGGGTAGTTCTTTTGGAAGTTTTGTGTGCAAGAGCAGCGATTGACCCATCTCTTCCAACAGATCAGATAAACTTGGCGGAATGGGGATTGCTTTGCAAAAACAAGGGGATACTCCGAGATATCATCGATCCTTCCATCATTGACCAAGTTGATCAAAACTCACTCAGAAAATTTATTGAGACGATAGAAAAATGCTTGAAAGAAAATGGTTCTGATAGGCCAAGCATGGGTGATGTGTTGTGGGACCTGGAGTATGCGCTGCAGCTTCAGACAGGGCCGTATGAGGATAGTTCTAGTAGTGTTTCTGCATCACTTCAACTTCCCAATGTTCGTCGTCTTCCTTCATTCTCTATACTGAGTGAAGCTTGA