Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_06205 LG1 91992170 91993643 PREDICTED: homeobox-leucine zipper protein HAT22-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   response to water deprivation, response to cytokinin, response to water deprivation, response to abscisic acid, response to cytokinin, abscisic acid-activated signaling pathway, response to water deprivation, response to abscisic acid, abscisic acid-activated signaling pathway, abscisic acid-activated signaling pathway, abscisic acid-activated signaling pathway
Cellular Component   located in   nucleus
Molecular Function   enables   DNA-binding transcription factor activity, RNA polymerase II-specific, transcription cis-regulatory region binding, protein binding, protein binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
A/T 91992636 synonymous_variant p.Ser136Ser
T/C 91992750 synonymous_variant p.Asn174Asn
C/T 91992992 intron_variant
T/A 91992998 intron_variant
C/T 91993236 synonymous_variant p.Gly264Gly

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_06205.1
MMGLHQDPTDSGLQLILGLALTSTPEDIITPSPPSILHHHHLTTHRPNSYSSKSSFISPSNSEPEPSLTLGLSRETYPQQVVKLPRNIPHNKLSSEDPLEQTSPHSAISSFSSGRVKRERDLSCEEVDATETERVSSRASDEEEDGTTARKKLRLTKEQSALLEESFKQHSTLNPKQKQALAKQLSLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKLAQPLYMPMSAATLTMCPSCERLGGGVGGGASTKSPFSMAPKPHFFNPFANPSAAC*


CDS Sequence:
>Vu_06205.1
ATGATGGGTCTTCATCAGGATCCCACCGACTCAGGCCTTCAGCTTATTCTAGGATTAGCTTTGACATCCACCCCAGAAGATATCATCACTCCATCACCACCATCCATTCTTCATCATCACCATCTTACCACTCACAGGCCAAACTCCTATTCCTCTAAATCCTCTTTCATCTCTCCATCTAACTCAGAGCCTGAGCCTTCACTCACGTTGGGCCTCTCCCGCGAAACTTATCCGCAGCAGGTGGTGAAACTCCCCAGAAACATACCACACAACAAACTCTCCTCTGAGGACCCTCTTGAACAGACATCACCTCACAGTGCTATTTCCTCCTTCTCCAGTGGAAGGGTCAAGAGGGAGAGGGATCTCAGCTGTGAAGAGGTGGATGCAACAGAGACGGAGAGGGTTTCATCAAGAGCCAGCGACGAAGAAGAAGACGGCACCACCGCCAGGAAGAAACTTAGGCTTACTAAAGAACAGTCCGCTTTGCTTGAAGAAAGCTTCAAACAACACAGCACCCTCAATCCTAAACAGAAGCAAGCTTTGGCCAAGCAGTTAAGTCTTCGGCCTCGACAAGTCGAAGTGTGGTTCCAGAACCGGAGAGCCAGAACAAAGCTGAAGCAGACAGAGGTGGACTGCGAGTTCCTAAAAAAGTGTTGTGAAACATTAACAGACGAGAACAGAAGGTTACAGAAGGAGCTGCAAGAGCTGAAGGCACTGAAACTGGCTCAGCCCTTGTACATGCCTATGTCTGCGGCAACCCTCACCATGTGTCCCTCGTGTGAGAGGCTCGGCGGCGGGGTAGGCGGCGGCGCTTCCACTAAGTCACCCTTCTCCATGGCTCCTAAACCTCACTTCTTCAACCCCTTCGCCAATCCTTCTGCAGCATGTTGA


Promoter Sequence:
>Vu_06205::LG1:91990170-91992170(+)
AGGCCACTTTTTTTTTATTCGAATTGTGAAAGTTGTAAATATAACACTGATTTAGAGACAGTTATTCCATCATTATACATTTTAGTATAAAAACTATTATAGAAATCGATCATTCTATCTATAATTATATGTTTTATTGTCATAGTATAAGTTAATAAGCTGATCATTAAATCAATTACTGAAAATATATAAATGTTGGTCCGGTCTAAACTTTATGCTATGAAATACTAATAAAACTAATACAAAGTATTGCATAAGTTTATAAACTAATCACTAAATTAATTTATAAAGTAATGAGTATGTGTGTGTGTTTATATATGTATGTATTGACCTTAATTAATTGCTCAATAGAAAGCATTATGATGATAAGTAAAATAATTAATAAGCCGTTCTTCATAATAAGACCGCCCACTAGCAAAATATCCATTTACTTTACCAAAGAGAGCCAACCAAATTGAAATGCATTTTGAATTTTTTTATCATGTTTATAAACATTACCCATTTACTTTATCACCATATTTGAGTGACCTGTGATCATTACCCAGATACATCTTTGATGTGGCAAAAGAAAAATTGAATGAAATTTCTCTCATTTGTAATTCAACTTGAACGAGTTAAAGATATTCTCCCTTTTAACTGTAAGGTGGTGTATAAACACAGGCAGTAGTGGCTATAAGTTGCGACTACGGTGGTGAATCAAGAACGTAGGGTGGTAAGACATCGATTTGAAGAAAGGCGGTAGCTGAGCAGGCGTGCATGAATGCATACTGATGAGAAATTTAAAATTAGATGAATAAATAAATAAATTAATTAGCTGAATAGGTCGAATGAATATTAATAATTAGTAATAAGAAGAAGCAGTGGCATTAAATGGGATGTGGGGGTTAACGGCGTTATGTATTTGGTAGCTAGGGCTATGAATATTATAGGTTGATCATGAATTATGAGTGAGGCAATTGGTGCAACGCATCGCCGACAATGCATTATTGGAAGTGCTTGTAGTACTAATAGAGAGAAGTAGGTCCGGAACACTCCACATCAACTTTCTAGTTAAGCAAAGATCCGGATTCTTGTTGATGAATCATATTCTGGCGCCATTATAACTCTTTGAAACTCCATTTCTGTCTTGTACCTACTTTTCTTTTCTTTTGGAAATTAACAAATCCTGCACATCCCTTTCTACTCTCCACATTATTCATAATAAGCAAGAGAAAACCCTCCAACCATCCCTCACATTCCTCCTTCATTAGCAACTAGTATTGGTAAGCAAGGTGCATGCATATATGACATGCTACCCATCTCTTATCTCTAACTGCTTAACCCCGGCATGGAGTGGGAGACACTTCATGCGGGTCTGTTACAATTATGGAAAACACAAATCCATCTCTACCTTTTTCCAACTTACATATATGTTCATTCATGTAACGAATAATAATAAAAGAAAAAAAAACGAAATAAGGAATGGTGGGACAGGAGTAAAGTGGGAGTAAAGGGGGCCAATAATTGGGACAATGTAAAGTGAAGCTGCTACATACTACGCAGGGAAGCATATGTGGGAAAGGAATTAAAGTGTGGCAATAATTATGTATTGTAATATAGGTACGTGTGTGGGTGGCGAAGGGAAGCGAATCACCCACCCTCTTGATGTGTGTTTGCATTGGCATTGGCATGTGAAGATGTTAGGGTTGTATAGCAATATAGGATCTCAGAGAGAAAGATTATCCAACTTTGTCTGCTATCATAATGGAGGTAACAGTAGTGGGGCACATAATGGTCAACCTATGCAACAGATATAGAACTCATAATTTCCAACACCCATATTCCTTTCACTACTCATTCCGCCCTTTGATTAATAATAATCATAGCCACCCACCCACCCACCCTTTGCCCCCACAAAAAGTCACATTCATTCTCTTTCCCCTCCCTCTCTTCTCAATAAACACCCTTCTACTACCTCCCATCACACTTTATAAACCACACCATCATCTAATCATCATCTA


Gene Sequence:
>Vu_06205(+)
AAACTAAACCACTCTCTATTTCCTTCCTCCTCTCCCACACATACTCCTTCCATCACCTTATGATGGGTCTTCATCAGGATCCCACCGACTCAGGCCTTCAGCTTATTCTAGGATTAGCTTTGACATCCACCCCAGAAGATATCATCACTCCATCACCACCATCCATTCTTCATCATCACCATCTTACCACTCACAGGCCAAACTCCTATTCCTCTAAATCCTCTTTCATCTCTCCATCTAACTCAGAGCCTGAGCCTTCACTCACGTTGGGCCTCTCCCGCGAAACTTATCCGCAGCAGGTGGTGAAACTCCCCAGAAACATACCACACAACAAACTCTCCTCTGAGGACCCTCTTGAACAGACATCACCTCACAGTGCTATTTCCTCCTTCTCCAGTGGAAGGGTCAAGAGGGAGAGGGATCTCAGCTGTGAAGAGGTGGATGCAACAGAGACGGAGAGGGTTTCATCAAGAGCCAGCGACGAAGAAGAAGACGGCACCACCGCCAGGAAGAAACTTAGGCTTACTAAAGAACAGTCCGCTTTGCTTGAAGAAAGCTTCAAACAACACAGCACCCTCAATCCTGTAATCATATTCTCCCTCTTATTATTTTCCTACATGCATCAATATCATGACTTTTAATATCGTGACTCATATTGTCGTCTTCAATTGGGGTTACAGAAACAGAAGCAAGCTTTGGCCAAGCAGTTAAGTCTTCGGCCTCGACAAGTCGAAGTGTGGTTCCAGAACCGGAGAGCCAGGTAAATATGTTTGGTTGATTAAAACCTTATATGTTATGCATCTTCGTATCATTGAAAGGGGTCATACGTTATATCAATGTTTGAAATTGTTGATTAATATTTTTTGTTTCCTTGTTGCAGAACAAAGCTGAAGCAGACAGAGGTGGACTGCGAGTTCCTAAAAAAGTGTTGTGAAACATTAACAGACGAGAACAGAAGGTTACAGAAGGAGCTGCAAGAGCTGAAGGCACTGAAACTGGCTCAGCCCTTGTACATGCCTATGTCTGCGGCAACCCTCACCATGTGTCCCTCGTGTGAGAGGCTCGGCGGCGGGGTAGGCGGCGGCGCTTCCACTAAGTCACCCTTCTCCATGGCTCCTAAACCTCACTTCTTCAACCCCTTCGCCAATCCTTCTGCAGCATGTTGATTGATTCTTATTATGAATTAGGTTTTTAGTTTTGTTTTTGTCGTTAAAAAAAACAAAAAAAAAAAACAACGAAAGAAGAGTTTCCCGGCAACCTTTGTATTTTTTTGGTTGGGGGATAGGATACGTACGATGGATTACTACATCAGGTAGTGAAAAGTTAAGGGTGTAATTAACTAATACTGTAGAAATTTGTAACTGCTGATCAAAATTACTTTTTACTTTTGATCCTTTTGTTGTATGTTTATAAATCGTTATAGAAGAAGACATCCATATGTATGAAGGAATGAATCACTATTATTTTATTGTTC