Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_06221 LG1 92249374 92250516 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of root hair elongation, regulation of root hair elongation, root hair initiation, root hair initiation, root hair initiation, regulation of root hair elongation, regulation of root hair elongation, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of root hair elongation, regulation of root hair elongation, root hair initiation, regulation of root hair elongation
Cellular Component   located in   nucleus, nucleus, nucleus
Molecular Function   enables   cis-regulatory region sequence-specific DNA binding, cis-regulatory region sequence-specific DNA binding, DNA-binding transcription factor activity, cis-regulatory region sequence-specific DNA binding, cis-regulatory region sequence-specific DNA binding, sequence-specific DNA binding
SNP Position Effect Amino acid change
T/A 92249374 stop_lost&splice_region_variant p.Ter283Cysext*?
T/A 92249394 stop_gained p.Arg277*
G/T,A 92249608 synonymous_variant p.Ser205Ser
G/T 92249647 missense_variant p.His192Gln
C/T 92249801 missense_variant p.Arg141His
G/T 92250084 missense_variant p.Gln47Lys
C/T 92250191 intron_variant
A/T 92250211 intron_variant
C/T 92250212 intron_variant
T/G 92250382 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_06221.1
MLLVVVRGGEMIKQVAEERLRHFEGVEAKGRKFQYHGYRDWPCLGDQIQKLYHPNPNSITTSPPPSPSWMWNPRDQEDDSWEVRAFAEDTSNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQASPINHRHHHPISSLSRSHHSSSFLNLSHSPDPFANGGVCLLYPFPSPNTAPFSPLGHTTSFNNACADSPSSLFSVSSSLSHPPMSLPTCSNASFDFPVAEPATRRRTVLSSYSGKGEQEPATSSAHHGQHEELDLELRLGNRSTSTP*


CDS Sequence:
>Vu_06221.1
ATGTTATTGGTGGTTGTTCGGGGCGGGGAGATGATTAAACAAGTGGCAGAGGAGCGTCTCAGACATTTTGAAGGCGTAGAAGCCAAAGGAAGGAAGTTTCAGTACCATGGCTACAGGGATTGGCCTTGTCTCGGTGACCAGATCCAAAAATTGTACCATCCAAACCCTAACTCCATCACCACCTCTCCTCCTCCCTCACCCTCTTGGATGTGGAATCCAAGGGACCAAGAAGATGACTCCTGGGAGGTCAGAGCCTTTGCAGAGGACACCAGCAACATCATGGGCACCACTTGGCCTCCAAGGTCCTACACCTGCACTTTCTGTAGAAGGGAGTTCCGTTCAGCACAAGCCCTCGGTGGCCACATGAACGTTCACCGCCGCGACCGTGCTCGCCTCCACCAAGCCTCACCCATCAACCACCGCCACCACCACCCCATCTCCTCTCTCTCCCGCTCACACCACTCTTCCTCTTTTCTCAACCTCTCTCACTCTCCGGACCCTTTCGCAAATGGTGGGGTGTGCCTCTTGTACCCCTTCCCTAGCCCTAACACTGCTCCATTCTCCCCTCTTGGCCACACCACCAGTTTCAATAATGCATGTGCTGACTCTCCCTCCTCTCTTTTCTCTGTCTCCTCTTCCCTTTCACACCCTCCAATGAGCCTCCCAACTTGCTCAAATGCCTCCTTTGATTTCCCAGTGGCGGAGCCTGCCACAAGGAGGAGGACCGTTCTCTCTTCTTATTCTGGGAAAGGGGAACAAGAACCCGCAACCTCCTCCGCTCATCATGGCCAACACGAGGAGCTTGATCTAGAGCTCCGTTTGGGAAATAGATCAACATCAACGCCATGA


Promoter Sequence:
>Vu_06221::LG1:92250516-92252516(-)
CGTTACTTTGATTTTTTAAATGCTACAAAAATGACTTTTTTATTTATTTACAATGTTAATTATAGACTTAAATTAACTTTTCTTTGAACAAAAGTTAATTAAAAGATTACATATTCTCTATTGAGAACTTAAGTAAAATCCTTTTTTTTTTTGTATTTACAAGTTCATATTAATTGATATCTTCATTAAAGGAATCGAATTTAATACTATTTGACCAAGGAGTTTCTGATACATATGATATGCACTATTGTTCAGAAATTTTGACATGATTGAATCGTTGTATACTAAGACCAGTTTCAGAACGTTAACAATTCCTATTATTAGGACATGACACAAGTTTCAGAACTTTAACAATTCCCATTATTAGGACATGTTTTCCTTCTGGTAGTAGATCATAGACTCAACAAATACAGCGTGTCAAAAGTTAAGAAATAGTACAACACAGACGCAGACGACACACATGGTTCAAAGGAACTCCTGAAAACAGGAAAAAAAACACCGTATGTTCAAACAACAATTAATACCGTTAGAAAATCTGGCTTTAACTGATATTTCTTATTCAAGATATTTTTCAATGGAATGGAGTTAAAAACTATTTATTTATTTTTTAATTTAATGATTACTGAAGTAAATGTTACCTCTTTCAAGGAAGCCTTTTTTTTTTACACACTTGATAGAGGATCAAATTCATGACATGTTAAAAAATCTAACTGTATCAGCTTTATATTGAAAAGAAAAGGTTTGACCATTTAGGAGAAATATATAGATTGGTCCTTGGTAGATAAGATATGATGTATAACATTTCAGAGAGATGCTGTTGCTCACAGTTATTACTCTCTGACTTAACAAAACCAAAGGAATTGATGTTTCTATATAGTTGTTTTTTGACAATAGAATATGAAACTAATTATTATTTAATAATAGTTTAACCTAGAATTAAGAAGTTGAGATGTGCAATGCAAGTAAAGGATTGGTGAGATGTAATTAAGGGGGTCATGTTTAGGTTGAAGCTAAGAGTAGGTGCTTGAAGAGGACGACACAAACAATGACAAGAATGTAAGATGGGCGTTTTCTTGGTGTGTTCACAGGCGAAGAAAGTTATGTCTGAAGTGTTTCTTTATAGGGGTGTCTTTAATTGCTTGTCCTATATATCTGCACTCAATTTAGATGAAAGGGTCAGAAAAGGGAAATATACAAAAGCACCAATCACTCGTTATGAAACAACACTTCCAAACTTTAAACAATATATATTTTAGAAACACAAAAATACATTTTTTATATATTCTCTTACAATTTTCAATAATTATTTTCCACCTCTAAATCTTTAACCAGTGTCCTTTGAAAATCAATCAACAAGCAGATCCTCCATACCTTGTATGGGGATAGTGAACCATTTTTTAATATTTTATTTTTAGAGTTGCATTATAGACAATAGTATAAAATTGGCAAACATTATTAAATTAAAAAAAATAATTCATATATTAAAAATATATACTGCTTTAATTTTAATATTATAAAAATGCGAAATATAAAACTTTAAACAATTCTTAATCATTATTAATTAAGCTCCTTGAAACAGTCCTTTTGTGAAACTTGTTTGCCGAGAATTACCATCTAACCATCATAAAATATGATGACTTTTTTCATCTCATTTATACTTACAAAACATAAATTTTTTGCTATTTAATATTATTTATTAGTCATTAGCATTTTTTGTTTACTGAAAATTAGACTGATAGTATAACTATTTAAATACTGTGATGACTTTATAGACAAACAAAATGACTTATTAAACATATTATTTGTTTTACCGGTTAATGTTGTGTTGTAAAAATATTTTAATTAAAAATACATAGAAAGTAAAGTCGTAAAAGACATGAAGTTTCTATTTATTTCTACGGTTAAACTCGTATAGTCTAAATTACCAACTTATTATAAAAAGTGTTAATATTACTTATAAGCAATGAAATAACATTTTTTATCTGCATAAAACAGATTAC


Gene Sequence:
>Vu_06221(-)
ATGTTATTGGTGGTTGTTCGGGGCGGGGAGATGATTAAACAAGTGGCAGAGGAGCGTCTCAGACATTTTGAAGGCGTAGAAGCCAAAGGAAGGAAGGTAATTAATTAATAAATTAAGATGTTTGAAGCAACATAAGAAAGTTATTACTAATTAAGATAATTATATGATGTAATGTTTGTATAGAGGATCCAAATGCTGGGTGTCAAAAATGGGTGATACATTCGATTGGGGTTTTGAGGGATTGATTTTGGTCCCTAGTCATGTCCCCTACTACATATATATTTAAAGAATTTATATATTTTTGGTAGCTAGCTATCTCCAATTTGTTCATTCCCACATCGACTAACTCTCCCATCACTTATCTATCTATCTATCTATCTTAAATGTCAGTTTCAGTACCATGGCTACAGGGATTGGCCTTGTCTCGGTGACCAGATCCAAAAATTGTACCATCCAAACCCTAACTCCATCACCACCTCTCCTCCTCCCTCACCCTCTTGGATGTGGAATCCAAGGGACCAAGAAGATGACTCCTGGGAGGTCAGAGCCTTTGCAGAGGACACCAGCAACATCATGGGCACCACTTGGCCTCCAAGGTCCTACACCTGCACTTTCTGTAGAAGGGAGTTCCGTTCAGCACAAGCCCTCGGTGGCCACATGAACGTTCACCGCCGCGACCGTGCTCGCCTCCACCAAGCCTCACCCATCAACCACCGCCACCACCACCCCATCTCCTCTCTCTCCCGCTCACACCACTCTTCCTCTTTTCTCAACCTCTCTCACTCTCCGGACCCTTTCGCAAATGGTGGGGTGTGCCTCTTGTACCCCTTCCCTAGCCCTAACACTGCTCCATTCTCCCCTCTTGGCCACACCACCAGTTTCAATAATGCATGTGCTGACTCTCCCTCCTCTCTTTTCTCTGTCTCCTCTTCCCTTTCACACCCTCCAATGAGCCTCCCAACTTGCTCAAATGCCTCCTTTGATTTCCCAGTGGCGGAGCCTGCCACAAGGAGGAGGACCGTTCTCTCTTCTTATTCTGGGAAAGGGGAACAAGAACCCGCAACCTCCTCCGCTCATCATGGCCAACACGAGGAGCTTGATCTAGAGCTCCGTTTGGGAAATAGATCAACATCAACGCCATGA